BAC Information

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BAC

Clone NameB6Ng01-278E02
Chromosome3 (Build37)
Map Location 134,905,126 - 135,061,057
singlet/doubletdoublet
Overlap geneCenpe, Bdh2, C80638, 4933425K02Rik
Upstream geneCxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290, EG620439
Downstream geneZcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278E02.bB6Ng01-278E02.g
ACCGA078549GA078550
length9371,113
definitionB6Ng01-278E02.b B6Ng01-278E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,060,096 - 135,061,057)(134,905,126 - 134,906,242)
sequence
gaattcacaatcgtcacaaagaccaccttgcatttttctagggtatttac
tgactgacttgattcttgaactatgcaggtattagactgaaggaccactg
cagttgactgcagtttttattaaaatttactctgaaccaagaaccagagg
aaagcccagtagagaaattgtgtttagcgaatcctggtttttacaaacaa
tctttaaacttctgtactgtaacttttttttttttggtcaggtgagataa
atcatgagacatagcaggtgatgatggcaagctttttaatgatggaagtt
cgagagctcaactttcaaagggaatgtcacctcactctgttcaaggattt
tgggtcccagtatgccgatgaggagggctccatttggagctgtaatcagg
atggctaggaaggccactgtcatcacagccttcgcgtatccttccaagtg
gggtgccatgacccttgctgtttctagagccagaggtcctaagacagcct
gcagttggggatgatacaggggaaaaatgttgctcagagtcaacacttga
taaaagtagatggctgttatagatgcacacaatgaaactgagtgataaag
tactggaaggaaaaaaaccagggtaatttgtatcatttagtcattaattg
tgtattcttcctagcaaatctatctggaagaaatcagaataggggagaag
caggcagaagtgttaaattgaaaaacatttgttctaactcatatgtggga
cacatgcttctacttgtgtaaaatgttggctggtgggatagttagtggca
gagcacttgctacatgtgcagatctgagtttgaaaaaatgatacatggtt
ttcagttcttaatttgccagagtacatgtaggcgatgcaggagagggaca
aggagagcagttaacagctgcactgggggtgtgggtg
gaattcaggaaccaaggattggcattggagcgtgtggagacagagaaact
ggagttagctcagagacttcatgaaagttatgaggaggtgaaatctataa
ccaaagaaagaaatgatctaaaggaattgcaggagtcatttgaaatagag
aagaagcaacttaaagaatatgcaagggaaatagaagccgcggtaagtaa
tatcagccatttctttatctggtaaatgtttctttaataacctattctac
tgaaaagagggaggcagtattgggtgaatactacaaaattccttaaattt
cacttactgaacaagggcctacaaacaaaagaagaactaaacattgccca
cgcgaatctaaaagagtaccaggaaatcatcacagagctaagaggaagca
tttctgaaaacgaagcacaaggagcaagcacccaggacacggcaaaaagc
gcccctgagctacaaggagaggtatccatgtcttcatggccttctccact
tctgtcttctttctccttggaaggaaaatagatgcatagttgcaatttat
tcactgggtaagagttcagcagctgtctactgtggcagacacagtctggg
ctggtgcagcgtacactctcagaacttgagggtaaagcaggagaatcagg
agttcaagatgagcctggactccacagaaagtttgaggctcgcctgagct
atggaagaccctgtccctaaaaagaaaaacagtgataacagagggacaaa
gaaagacccatattggttgtagtcgaaggaaatagcaataagtaagcagt
cagacgagtaagccaccgtgacaccgggataactgagccagtccagtttt
aaaaactactttctgccaagcattgaaacttgtataataaaatggttctt
tttctcaatgtgtatacacatctaaacaattcttcgattctaatgtcgtg
cctatagaaatatgcaagttacatggctcattagcaccaggatgaatggg
gagtcagtgtgcacacacagaaaacttggattcagcaaaggatggggagt
ggtatgttatacaacatataccacaatacattataagtatactaatgtaa
ctacataatattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_135060096_135061057
seq2: B6Ng01-278E02.b_45_981 (reverse)

seq1  CACCCCCACCCCCAGTTTGCAGCTTGTTTACTCTGCTTCTCCTTGTCCCC  50
      ||||| |||||||||  |||||| |||| |  |||| ||||||||| |||
seq2  CACCCACACCCCCAG--TGCAGC-TGTTAA--CTGC-TCTCCTTGT-CCC  43

seq1  TCTTCCTGGCATCTGGCCTACATTGTACTCTGTGCAAATTTTAAGAACTG  100
      || |||| |||||  ||||||| ||||||||| |||||  ||||||||||
seq2  TC-TCCT-GCATC--GCCTACA-TGTACTCTG-GCAAA--TTAAGAACTG  85

seq1  GAAAAACCAATGTATCAATTTTTTTTCAAACTCAAGATCTTGCACATGGT  150
        |||||| ||||||||   ||||||||||||| ||||| ||||||| ||
seq2  --AAAACC-ATGTATCA---TTTTTTCAAACTC-AGATC-TGCACAT-GT  126

seq1  AGGCAAGTGCTCTGCCACTAACTATCCCACCAGCCAACATTTTTACACAA  200
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  A-GCAAGTGCTCTGCCACTAACTATCCCACCAGCCAACA-TTTTACACAA  174

seq1  GTAGAGGCATGTGTCCCACATATGAGTTAGAACAAATG-TTTTCAATTTA  249
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  GTAGAAGCATGTGTCCCACATATGAGTTAGAACAAATGTTTTTCAATTTA  224

seq1  ACACTTCTGCCTGCTTCTCCCCTATTCTGATTTCTTCCAGATAGATTTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTGCCTGCTTCTCCCCTATTCTGATTTCTTCCAGATAGATTTGC  274

seq1  TAGGAAGAATACACAATTAATGACTAAATGATACAAATTACCCTGGTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAATACACAATTAATGACTAAATGATACAAATTACCCTGGTTTT  324

seq1  TTTCCTTCCAGTACTTTATCACTCAGTTTCATTGTGTGCATCTATAACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCAGTACTTTATCACTCAGTTTCATTGTGTGCATCTATAACAG  374

seq1  CCATCTACTTTTATCAAGTGTTGACTCTGAGCAACATTTTTCCCCTGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTACTTTTATCAAGTGTTGACTCTGAGCAACATTTTTCCCCTGTAT  424

seq1  CATCCCCAACTGCAGGCTGTCTTAGGACCTCTGGCTCTAGAAACAGCAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCAACTGCAGGCTGTCTTAGGACCTCTGGCTCTAGAAACAGCAAG  474

seq1  GGTCATGGCACCCCACTTGGAAGGATACGCGAAGGCTGTGATGACAGTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGGCACCCCACTTGGAAGGATACGCGAAGGCTGTGATGACAGTGG  524

seq1  CCTTCCTAGCCATCCTGATTACAGCTCCAAATGGAGCCCTCCTCATCGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTAGCCATCCTGATTACAGCTCCAAATGGAGCCCTCCTCATCGGC  574

seq1  ATACTGGGACCCAAAATCCTTGAACAGAGTGAGGTGACATTCCCTTTGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGGACCCAAAATCCTTGAACAGAGTGAGGTGACATTCCCTTTGAA  624

seq1  AGTTGAGCTCTCGAACTTCCATCATTAAAAAGCTTGCCATCATCACCTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGCTCTCGAACTTCCATCATTAAAAAGCTTGCCATCATCACCTGC  674

seq1  TATGTCTCATGATTTATCTCACCTGACCAAAAAAAAAAAAGTTACAGTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCATGATTTATCTCACCTGACCAAAAAAAAAAAAGTTACAGTAC  724

seq1  AGAAGTTTAAAGATTGTTTGTAAAAACCAGGATTCGCTAAACACAATTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTAAAGATTGTTTGTAAAAACCAGGATTCGCTAAACACAATTTC  774

seq1  TCTACTGGGCTTTCCTCTGGTTCTTGGTTCAGAGTAAATTTTAATAAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGGGCTTTCCTCTGGTTCTTGGTTCAGAGTAAATTTTAATAAAAA  824

seq1  CTGCAGTCAACTGCAGTGGTCCTTCAGTCTAATACCTGCATAGTTCAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTCAACTGCAGTGGTCCTTCAGTCTAATACCTGCATAGTTCAAGA  874

seq1  ATCAAGTCAGTCAGTAAATACCCTAGAAAAATGCAAGGTGGTCTTTGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCAGTCAGTAAATACCCTAGAAAAATGCAAGGTGGTCTTTGTGA  924

seq1  CGATTGTGAATTC  962
      |||||||||||||
seq2  CGATTGTGAATTC  937

seq1: chr3_134905126_134906242
seq2: B6Ng01-278E02.g_64_1176

seq1  GAATTCAGGAACCAAGGATTGGCATTGGAGCGTGTGGAGACAGAGAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAACCAAGGATTGGCATTGGAGCGTGTGGAGACAGAGAAACT  50

seq1  GGAGTTAGCTCAGAGACTTCATGAAAGTTATGAGGAGGTGAAATCTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAGCTCAGAGACTTCATGAAAGTTATGAGGAGGTGAAATCTATAA  100

seq1  CCAAAGAAAGAAATGATCTAAAGGAATTGCAGGAGTCATTTGAAATAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAAGAAATGATCTAAAGGAATTGCAGGAGTCATTTGAAATAGAG  150

seq1  AAGAAGCAACTTAAAGAATATGCAAGGGAAATAGAAGCCGCGGTAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAACTTAAAGAATATGCAAGGGAAATAGAAGCCGCGGTAAGTAA  200

seq1  TATCAGCCATTTCTTTATCTGGTAAATGTTTCTTTAATAACCTATTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCCATTTCTTTATCTGGTAAATGTTTCTTTAATAACCTATTCTAC  250

seq1  TGAAAAGAGGGAGGCAGTATTGGGTGAATACTACAAAATTCCTTAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGGGAGGCAGTATTGGGTGAATACTACAAAATTCCTTAAATTT  300

seq1  CACTTACTGAACAAGGGCCTACAAACAAAAGAAGAACTAAACATTGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTGAACAAGGGCCTACAAACAAAAGAAGAACTAAACATTGCCCA  350

seq1  CGCGAATCTAAAAGAGTACCAGGAAATCATCACAGAGCTAAGAGGAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAATCTAAAAGAGTACCAGGAAATCATCACAGAGCTAAGAGGAAGCA  400

seq1  TTTCTGAAAACGAAGCACAAGGAGCAAGCACCCAGGACACGGCAAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAAACGAAGCACAAGGAGCAAGCACCCAGGACACGGCAAAAAGC  450

seq1  GCCCCTGAGCTACAAGGAGAGGTATCCATGTCTTCATGGCCTTCTCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGAGCTACAAGGAGAGGTATCCATGTCTTCATGGCCTTCTCCACT  500

seq1  TCTGTCTTCTTTCTCCTTGGAAGGAAAATAGATGCATAGTTGCAATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCTTTCTCCTTGGAAGGAAAATAGATGCATAGTTGCAATTTAT  550

seq1  TCACTGGGTAAGAGTTCAGCAGCTGTCTACTGTGGCAGACACAGTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGTAAGAGTTCAGCAGCTGTCTACTGTGGCAGACACAGTCTGGG  600

seq1  CTGGTGCAGCGTACACTCTCAGAACTTGAGGGTAAAGCAGGAGAATCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCAGCGTACACTCTCAGAACTTGAGGGTAAAGCAGGAGAATCAGG  650

seq1  AGTTCAAGATGAGCCTGGACTCCACAGAAAGTTTGAGGCTCGCCTGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGATGAGCCTGGACTCCACAGAAAGTTTGAGGCTCGCCTGAGCT  700

seq1  ATGGAAGACCCTGTCCCTAAAAAGAAAAACAGTGATAACAGAGGGACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGACCCTGTCCCTAAAAAGAAAAACAGTGATAACAGAGGGACAAA  750

seq1  GAAAGACCCATATTGGTTGTAGTCGAAGGAAATAGCAATAAGTAAGCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACCCATATTGGTTGTAGTCGAAGGAAATAGCAATAAGTAAGCAGT  800

seq1  CAGACGAGTAAGCCACCGTGACACCGGGATAACTGAGCCAGTCCAGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGAGTAAGCCACCGTGACACCGGGATAACTGAGCCAGTCCAGTTTT  850

seq1  AAAAACTACTTTCTGCCAAGCATTGAAACTTGTATAATAAAATGGTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTACTTTCTGCCAAGCATTGAAACTTGTATAATAAAATGGTTCTT  900

seq1  TTTCTCAATGTGTATACACATCTAAACAATTCTTCGATTCTAATGTCGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAATGTGTATACACATCTAAACAATTCTTCGATTCTAATGTCGTG  950

seq1  CCTATAGAAATATGCAAAGTTACATGGCTCCATTAGCAACCAGGATGAAT  1000
      ||||||||||||||| ||||||||||||| ||||||| ||||||||||||
seq2  CCTATAGAAATATGC-AAGTTACATGGCT-CATTAGC-ACCAGGATGAAT  997

seq1  GGGGAGTCAGTGTGCACACACAGAAAACTTGGATTCAGCAAAGGATGGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTCAGTGTGCACACACAGAAAACTTGGATTCAGCAAAGGATGGGG  1047

seq1  AGT-GTATG-TATACACACATATACACACAATACATATATAAAGTATACT  1098
      ||| ||||| |||||| |||||||| |||||||||| ||| |||||||||
seq2  AGTGGTATGTTATACA-ACATATAC-CACAATACAT-TAT-AAGTATACT  1093

seq1  ATATGT-ACTACAT-ATATTC  1117
      | |||| ||||||| ||||||
seq2  A-ATGTAACTACATAATATTC  1113