BAC Information

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BAC

Clone NameB6Ng01-278F23
Chromosome3 (Build37)
Map Location 97,145,954 - 97,147,089
singlet/doubletsinglet
Overlap genenone
Upstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
Downstream geneOlfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278F23.bB6Ng01-278F23.g
ACCGA078635GA078636
length1,1621,195
definitionB6Ng01-278F23.b B6Ng01-278F23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttaaggaatgataaggaaaaactctgtgtatgccctgagtagg
tggaattgaggatgtggaacctgcaatatggaggccaaataaaccgagtc
agatctgtgatggacaggtgcttcctggtccagctgagtacactctccag
actctcctcactccactcacagtgctcagcccagcctcagtttccctctt
agactcatgatgttcttgctgaaacgaccgaccttcctctaatttcaaca
tagttctgtatctcgcaatgtcacctttgggaatggctactcttggttgt
caacctgaccgcaccaggaatcaaccacaactcaagctgctggacgatct
cacgagggattttcctgatcaggttattgaaacaagaagatccagcctca
ttctgggatgccaccttctgataacagacagaaggaaactttgctttttg
cctgcttgtcctcactctcgatggcgagttcatctatcctgtcgttgagg
aatgccttcatgggaattaaaacaaacttctctgggattccaacatagaa
tgatgaccaacatctcaccaggatccaagcctccatccaactggaattgc
tgagacatccaggttcacagcctgaacaacgaaggggctctcagtttcct
tattattattgttggatgacctgggctgattgttgtaagccaatctaata
gcctctgaaacacacacacacacacacacacacacacacacacacacaca
cacacacacacagagtccatgattagttggccttgtcagttcatggtggg
agcatgtggcagagaaaacccactcaactcagggccaggaaagggaaagg
gcaagagaaagggggttgagtccctctgtctcctttcaagggcatgtccc
agtggccaacagcacttctactagtcttcacctcttaaagattccatcac
ttccaatagtgccagcaaaggagccaaaccctttaccacacggaatctgt
ggaggatacttcgttccaccagcagcagcccagtcctttattcaccaagt
gtcatggccagcagcgaagtggttcttataaaaggaaaacacaacgacac
acttcctgctgtgggcctgccaagaaggttggaagcatgtggttaagttc
tctttctcgttc
gaattccactggaactgaagttacaggaaggggtgagctgcccagtctga
gtactgggaactgaggttgagtgttacctgctgagccatagctttagctc
caacaatatgctgacatcctcttagagcgccacttgttgaagatgtttta
ccccttgtataattctggtttatttatcaaaaaccaagtgtccaaagggg
tgtgaatttatatttggatcttcagttagatttcattgatcaacctgtct
ggttttatgccaaagccatctagttttattactatagctctgtagtaaag
tctgagatcagagatggtgattcttccagaagctcttttattgtacagga
ttgttttagcttttttgggtttcttttcccatatgaagctaagtattgtt
ctttcaaagtctgtaaagaattgtgttggaattttgatggagattgcatt
aactctgtagattgcctttggtcatttttactgtgataattctactgact
gatgagcatggggagtcttttccattttctcatatattcttcaatttctt
tcttcaaatttcttcaaaattgaagttcttgtcatataggtctttcactt
tcttggttagacttatcagaagatatttgtggctactatgttgggtgcat
tttatttttattttttgagacaaagtctttctgccattcagttttggctg
tattggaacttactatgtagactagaataatctcaaattcaagggttcca
cctgcctttgccacctgagtactggaattaaaggcatgcgctatcacacc
aagctaccataaagaattctacaggctttcaaagaaaaattaatgccaat
atttcccaattattctgcaaaatagaactgaatgaacactgcctaatcct
tctttaaagccactatgcccaaataccaaaaccacacaaggacacacaca
cacacaacaacacacaaagaacttatacacatatccctgtgaacataatg
caaattcttcaataaatactgcaacccaattccaaaaatatataaaaaat
atttactaagaatcatgtagctcatcaatgtaggaatgctgaacatatat
aattgattatgttaatcactggatatacgactagccatacaagtgatact
ctgtttagaaattcgaaaaaaggcctctctgtgaaataatatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_97145954_97147089
seq2: B6Ng01-278F23.b_44_1205

seq1  GAATTCTTTAAGGAATGATAAGGAAAAACTCTGTGTATGCCCTGAGTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGGAATGATAAGGAAAAACTCTGTGTATGCCCTGAGTAGG  50

seq1  TGGAATTGAGGATGTGGAACCTGCAATATGGAGGCCAAATAAACCGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGAGGATGTGGAACCTGCAATATGGAGGCCAAATAAACCGAGTC  100

seq1  AGATCTGTGATGGACAGGTGCTTCCTGGTCCAGCTGAGTACACTCTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTGATGGACAGGTGCTTCCTGGTCCAGCTGAGTACACTCTCCAG  150

seq1  ACTCTCCTCACTCCACTCACAGTGCTCAGCCCAGCCTCAGTTTCCCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTCACTCCACTCACAGTGCTCAGCCCAGCCTCAGTTTCCCTCTT  200

seq1  AGACTCATGATGTTCTTGCTGAAACGACCGACCTTCCTCTAATTTCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCATGATGTTCTTGCTGAAACGACCGACCTTCCTCTAATTTCAACA  250

seq1  TAGTTCTGTATCTCGCAATGTCACCTTTGGGAATGGCTACTCTTGGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGTATCTCGCAATGTCACCTTTGGGAATGGCTACTCTTGGTTGT  300

seq1  CAACCTGACCGCACCAGGAATCAACCACAACTCAAGCTGCTGGACGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGACCGCACCAGGAATCAACCACAACTCAAGCTGCTGGACGATCT  350

seq1  CACGAGGGATTTTCCTGATCAGGTTATTGAAACAAGAAGATCCAGCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGGATTTTCCTGATCAGGTTATTGAAACAAGAAGATCCAGCCTCA  400

seq1  TTCTGGGATGCCACCTTCTGATAACAGACAGAAGGAAACTTTGCTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGATGCCACCTTCTGATAACAGACAGAAGGAAACTTTGCTTTTTG  450

seq1  CCTGCTTGTCCTCACTCTCGATGGCGAGTTCATCTATCCTGTCGTTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGTCCTCACTCTCGATGGCGAGTTCATCTATCCTGTCGTTGAGG  500

seq1  AATGCCTTCATGGGAATTAAAACAAACTTCTCTGGGATTCCAACATAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTCATGGGAATTAAAACAAACTTCTCTGGGATTCCAACATAGAA  550

seq1  TGATGACCAACATCTCACCAGGATCCAAGCCTCCATCCAACTGGAATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACCAACATCTCACCAGGATCCAAGCCTCCATCCAACTGGAATTGC  600

seq1  TGAGACATCCAGGTTCACAGCCTGAACAACGAAGGGGCTCTCAGTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATCCAGGTTCACAGCCTGAACAACGAAGGGGCTCTCAGTTTCCT  650

seq1  TATTATTATTGTTGGATGACCTGGGCTGATTGTTGTAAGCCAATCTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTGTTGGATGACCTGGGCTGATTGTTGTAAGCCAATCTAATA  700

seq1  GCCTCTGAAACACACACACACACACACACACACACACACACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGAAACACACACACACACACACACACACACACACACACACACACA  750

seq1  CACACACACACAGAGTCCATGATTAGTTGGCCTTGTCAGTTCATGGTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGAGTCCATGATTAGTTGGCCTTGTCAGTTCATGGTGGG  800

seq1  AGCATGTGGCAGAGAAAACCCACTCAACTCAGGGCCAGG-AAGGGAAAGG  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCATGTGGCAGAGAAAACCCACTCAACTCAGGGCCAGGAAAGGGAAAGG  850

seq1  GCAAGAGAAAGGGGGTTGAGTCCCTCTGTCTCC-TTCAAGGGCATGTCCC  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAAGAGAAAGGGGGTTGAGTCCCTCTGTCTCCTTTCAAGGGCATGTCCC  900

seq1  AGTGGCCAACAGCACTTCTACTAGTCTTCACCTCTTAAAGATTCCATCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCAACAGCACTTCTACTAGTCTTCACCTCTTAAAGATTCCATCAC  950

seq1  TTCCAATAGTGCCAGCAAAGGAGCCAAACCC-TTACCACACGG-ATCTGT  996
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  TTCCAATAGTGCCAGCAAAGGAGCCAAACCCTTTACCACACGGAATCTGT  1000

seq1  GGAGGATAC-TCG-TCCA-CAGCAGCAGCCCAGTCCTTTA-TCA-CAAGT  1041
      ||||||||| ||| |||| ||||||||||||||||||||| ||| |||||
seq2  GGAGGATACTTCGTTCCACCAGCAGCAGCCCAGTCCTTTATTCACCAAGT  1050

seq1  GTCATGG-CAGCAGCG-AGTGGT--CTATAAA--GGAAACACAACGACAC  1085
      ||||||| |||||||| ||||||   ||||||  | ||||||||||||||
seq2  GTCATGGCCAGCAGCGAAGTGGTTCTTATAAAAGGAAAACACAACGACAC  1100

seq1  ---TTCTGCTGTGGGCTGGC--AGA--GGTGGAAGCATGTG--TTAGTTC  1126
         | |||||||||||  ||  |||  | ||||||||||||  | |||||
seq2  ACTTCCTGCTGTGGGCCTGCCAAGAAGGTTGGAAGCATGTGGTTAAGTTC  1150

seq1  T-TTTCT-GTTC  1136
      | ||||| ||||
seq2  TCTTTCTCGTTC  1162