BAC Information

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BAC

Clone NameB6Ng01-278P18
Chromosome3 (Build37)
Map Location 84,434,941 - 84,581,013
singlet/doubletdoublet
Overlap geneTmem154
Upstream geneLOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4
Downstream geneLOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l, 9930021J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278P18.bB6Ng01-278P18.g
ACCGA079083GA079084
length1,127622
definitionB6Ng01-278P18.b B6Ng01-278P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,434,941 - 84,436,064)(84,580,393 - 84,581,013)
sequence
gaattcagcacatctccttcatgatcaagacaaggtattctcttagaaca
cgctctagacaaactttggtaatagttttgtcttgtattctttgttgttg
ttgttgttgctgttgaagatggagagatggcttgctgttctacctaagaa
tctgatgtttgttcctagcagcagtggctcacagctgcctagctccaggg
gatccagttccttcttctggcctttgctatcttccggtatgcatagtata
cacacacacacacacacacacacacacacacacacacacactataatctt
aaaaatggtttacctttgttttgatagtaaatttttaaaatcttctaagt
acactgtagctgtcttcagacgccagaagagggcattagatcccattaca
gatggttgtgagctaccatgtggttgctgggaattgaacacaggacctct
ggtcacttaactcacatggctggttgcctttatctgctgccactactgta
tccccttcttccctgagtcacggggatttccccctagcatcttccctggg
cctctctcagtgtcccactccatgcccagccgttggtggctggcatcttt
attgataaaccaaactccatttgggaacaaggaccttcagcgcagttcaa
gcagattcccgattaaatgaaagcgtcaaccaccctctacacactcgctg
ctcctgcagggcacctaagtcttgtccctacgaccttgtcaggcactcac
aaccacctacaactctagttccaagggatccagtgccctcttctggtctc
cacaggcatctgcacacacggtaaagacaatatctccaggcttacacaca
cacacacacacacacacacacacactcacacacacacacacactcgcgca
catgaaatgattgcttttgcaaagaatgatgattgtaagcccagctactc
aagaagtagagatgggaagacctcagtgcatggccagtctggagaattag
caagaccatgtctcaatactcatgtcttaaaagtaagctgggggaggtaa
cttcagtacaaggagagcatgctaagcaatggcaaagtcccgaccctcct
accctatgctcaaacacgatggtgaat
gaattccttcctgaatttaaagcaaagaatagccatcagcacgaaccact
aactcctctaagtaagtgacaactgtcaataatattgattatctaaacag
ttcacatttttcacaatattgcattgtttcattttgttgttttgtttttc
tttaatcagatccagaatggtttgttttgtttttgagacatggttaaaaa
gagtttaaccatggtccaggctggccttgaactcggtgtcctcctgcctc
aacctccagaattctgaaattacagatattgccaacatacttgaatttat
atctacctttggatttcttaatccatgaattcaaaagttgggcagaagtc
tggtacgagatttcagtaactaaagggaaaagcaaaaagaatcaacgcca
accacatcccatctggcgccatccagacccgtatgggtgtatgagccaga
cccctgaaggaaaggaagtgagattccagcaacaggaaagtcagtgatag
tcaaccagcatcgaagaaatgccagagcatggcctctgagcaggcaaacc
tgccctgcatgagaactcagactcctgaaaatgcaaacacagagcaggtg
gggatgagaggtgtggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_84434941_84436064
seq2: B6Ng01-278P18.b_49_1175

seq1  GAATTCAGCACATCTCCTTCATGATCAAGACAAGGTATTCTCTTAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACATCTCCTTCATGATCAAGACAAGGTATTCTCTTAGAACA  50

seq1  CGCTCTAGACAAACTTTGGTAATAGTTTTGTCTTGTATTCTTTGTTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTAGACAAACTTTGGTAATAGTTTTGTCTTGTATTCTTTGTTGTTG  100

seq1  TTGTTGTTGCTGTTGAAGATGGAGAGATGGCTTGCTGTTCTACCTAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGCTGTTGAAGATGGAGAGATGGCTTGCTGTTCTACCTAAGAA  150

seq1  TCTGATGTTTGTTCCTAGCAGCAGTGGCTCACAGCTGCCTAGCTCCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTTTGTTCCTAGCAGCAGTGGCTCACAGCTGCCTAGCTCCAGGG  200

seq1  GATCCAGTTCCTTCTTCTGGCCTTTGCTATCTTCCGGTATGCATAGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGTTCCTTCTTCTGGCCTTTGCTATCTTCCGGTATGCATAGTATA  250

seq1  CACACACACACACACACACACACACACACACACACACACACTATAATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACTATAATCTT  300

seq1  AAAAATGGTTTACCTTTGTTTTGATAGTAAATTTTTAAAATCTTCTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGTTTACCTTTGTTTTGATAGTAAATTTTTAAAATCTTCTAAGT  350

seq1  ACACTGTAGCTGTCTTCAGACGCCAGAAGAGGGCATTAGATCCCATTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTAGCTGTCTTCAGACGCCAGAAGAGGGCATTAGATCCCATTACA  400

seq1  GATGGTTGTGAGCTACCATGTGGTTGCTGGGAATTGAACACAGGACCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGTGAGCTACCATGTGGTTGCTGGGAATTGAACACAGGACCTCT  450

seq1  GGTCACTTAACTCACATGGCTGGTTGCCTTTATCTGCTGCCACTACTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTAACTCACATGGCTGGTTGCCTTTATCTGCTGCCACTACTGTA  500

seq1  TCCCCTTCTTCCCTGAGTCACGGGGATTTCCCCCTAGCATCTTCCCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTTCCCTGAGTCACGGGGATTTCCCCCTAGCATCTTCCCTGGG  550

seq1  CCTCTCTCAGTGTCCCACTCCATGCCCAGCCGTTGGTGGCTGGCATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCAGTGTCCCACTCCATGCCCAGCCGTTGGTGGCTGGCATCTTT  600

seq1  ATTGATAAACCAAACTCCATTTGGGAACAAGGACCTTCAGCGCAGTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAAACCAAACTCCATTTGGGAACAAGGACCTTCAGCGCAGTTCAA  650

seq1  GCAGATTCCCGATTAAATGAAAGCGTCAACCACCCTCTACACACTCGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTCCCGATTAAATGAAAGCGTCAACCACCCTCTACACACTCGCTG  700

seq1  CTCCTGCAGGGCACCTAAGTCTTGTCCCTACGACCTTGTCAGGCACTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCAGGGCACCTAAGTCTTGTCCCTACGACCTTGTCAGGCACTCAC  750

seq1  AACCACCTACAACTCTAGTTCCAAGGGATCCAGTGCCCTCTTCTGGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTACAACTCTAGTTCCAAGGGATCCAGTGCCCTCTTCTGGTCTC  800

seq1  CACAGGCATCTGCACACACGGTAAAGACAATATCTCCAGGCTTACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCATCTGCACACACGGTAAAGACAATATCTCCAGGCTTACACACA  850

seq1  CACACACACACACACACACACACACACACACACACACACACACACGCGCA  900
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  CACACACACACACACACACACACACTCACACACACACACACACTCGCGCA  900

seq1  CATGAAATGATTGCTTTTGCAAAGAATGATGATTGTAAGCCCAGCTACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGATTGCTTTTGCAAAGAATGATGATTGTAAGCCCAGCTACTC  950

seq1  AAGAAGTAGAGATGGGAAGACCTCAAGTGCATGGCCAGTCTGGAGAATTT  1000
      |||||||||||||||||||||||| |||||||||||||||||||||| ||
seq2  AAGAAGTAGAGATGGGAAGACCTC-AGTGCATGGCCAGTCTGGAGAA-TT  998

seq1  AGCAAGACCATGTCTCAA-AATCATGTTCTAAAAAGGAAGCT-GGGGAGG  1048
      |||||||||||||||||| | ||||| ||| ||||| ||||| |||||||
seq2  AGCAAGACCATGTCTCAATACTCATG-TCTTAAAAGTAAGCTGGGGGAGG  1047

seq1  TAAC-TCAGTACAA-GAGAGCATGCTAAGC-ATGGCAAAGTCCCGCACTC  1095
      |||| ||||||||| ||||||||||||||| ||||||||||||||  |  
seq2  TAACTTCAGTACAAGGAGAGCATGCTAAGCAATGGCAAAGTCCCGACCCT  1097

seq1  CCTACCC-ATGCTCAAAACAGATGGTGAAT  1124
      ||||||| |||||||||   ||||||||||
seq2  CCTACCCTATGCTCAAACACGATGGTGAAT  1127

seq1: chr3_84580393_84581013
seq2: B6Ng01-278P18.g_65_686 (reverse)

seq1  CCTCCTCCACACCTCTCATCCCCACCTG-ACTGTGTTTGCATTTTCAGGA  49
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CCTCCTCCACACCTCTCATCCCCACCTGCTCTGTGTTTGCATTTTCAGGA  50

seq1  GTCTGAGTTCTCATGCAGGGCAGGTTTGCCTGCTCAGAGGCCATGCTCTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGTTCTCATGCAGGGCAGGTTTGCCTGCTCAGAGGCCATGCTCTG  100

seq1  GCATTTCTTCGATGCTGGTTGACTATCACTGACTTTCCTGTTGCTGGAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTTCGATGCTGGTTGACTATCACTGACTTTCCTGTTGCTGGAAT  150

seq1  CTCACTTCCTTTCCTTCAGGGGTCTGGCTCATACACCCATACGGGTCTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCCTTTCCTTCAGGGGTCTGGCTCATACACCCATACGGGTCTGG  200

seq1  ATGGCGCCAGATGGGATGTGGTTGGCGTTGATTCTTTTTGCTTTTCCCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGCCAGATGGGATGTGGTTGGCGTTGATTCTTTTTGCTTTTCCCTT  250

seq1  TAGTTACTGAAATCTCGTACCAGACTTCTGCCCAACTTTTGAATTCATGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTGAAATCTCGTACCAGACTTCTGCCCAACTTTTGAATTCATGG  300

seq1  ATTAAGAAATCCAAAGGTAGATATAAATTCAAGTATGTTGGCAATATCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAATCCAAAGGTAGATATAAATTCAAGTATGTTGGCAATATCTG  350

seq1  TAATTTCAGAATTCTGGAGGTTGAGGCAGGAGGACACCGAGTTCAAGGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAGAATTCTGGAGGTTGAGGCAGGAGGACACCGAGTTCAAGGCC  400

seq1  AGCCTGGACCATGGTTAAACTCTTTTTAACCATGTCTCAAAAACAAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGACCATGGTTAAACTCTTTTTAACCATGTCTCAAAAACAAAACA  450

seq1  AACCATTCTGGATCTGATTAAAGAAAAACAAAACAACAAAATGAAACAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCTGGATCTGATTAAAGAAAAACAAAACAACAAAATGAAACAAT  500

seq1  GCAATATTGTGAAAAATGTGAACTGTTTAGATAATCAATATTATTGACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATTGTGAAAAATGTGAACTGTTTAGATAATCAATATTATTGACAG  550

seq1  TTGTCACTTACTTAGAGGAGTTAGTGGTTCGTGCTGATGGCTATTCTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTTACTTAGAGGAGTTAGTGGTTCGTGCTGATGGCTATTCTTTG  600

seq1  CTTTATATTCAGGAAGGAATTC  621
      ||||| ||||||||||||||||
seq2  CTTTAAATTCAGGAAGGAATTC  622