BAC Information

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BAC

Clone NameB6Ng01-279M15
Chromosome3 (Build37)
Map Location 125,549,621 - 125,681,478
singlet/doubletdoublet
Overlap geneUgt8a
Upstream geneLOC668820, Ndst4
Downstream geneArsj, Camk2d, Ank2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279M15.bB6Ng01-279M15.g
ACCGA079681GA079682
length1,1191,095
definitionB6Ng01-279M15.b B6Ng01-279M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,680,360 - 125,681,478)(125,549,621 - 125,550,717)
sequence
gaattctcgctcagggtcatattaaaatgtgaaattgaaaagtcaggaaa
aggggactcatatatgtacttataattcaagcaagtacctggatccattt
agggaccagaatgggcagagaagaatgagttatttgtgaaaaactgtttt
cttttaacattacagggaagctattcaccaattaaaatcagaaataacag
taaaaaaaaaaagattttaaaaagtgataaccatcactcagatctcttgc
aattgcatatattatatcactaaaaggggtgtatatcaaccagatatatt
atttattaagatagctcattttttttcaatggccactgactttttggagt
cctgagatgcagaaaagcccatacatgcaataagttgtgtaggcagctct
gctagaggaaacagggacaaataccccaagcatctgtcgaatctgttctc
cagaggtctgagaagctgcctggagcatgtgaatgggcatctgtagcctg
gagaccctgggatagagacccatagcctgcctttttttcttttctttttt
ctttttttttaaataccagcgtcacagtgcatactgattgaaaatgttta
agaaccaccctgcttttggtggggatgggaaagtaagtaggtctatccat
ttctcagattgttgcatttttagcacagttattcttgagacttacaaatg
gtaaaaaagaggaaagtgggccagtcaaaggacactcagggagctatcct
gaaactattattgttcatattaaattttagttagttcagaactactggta
actccagctcctgaggatctgatgtcctattctgacttctgtgggtacag
acacacatgagtacatacacagacatttacatataagtagaagtaaattg
aattttaaaagattatatttgggtgagttaggaagatgtgtacaaagcta
gtcatcagtctagactagagcactctgaatggcttctgaagtagtattca
ctaacatcagaggataacaggattcttctgtagaaataacggaacaaagg
aaagtgactgatggaagaaaagctgcattttttaaagtgcccatataaga
acatctgggcaatgggatg

gaattcaaatgagattgtttagcaaagaggaatttccatgcccaccaagg
caaacaaataaatcactacctatattctgtgaatgttttcaaacagaccg
tgtttaatgacatggactgtatttataactgagtttatattcacgccttt
tctgttttacttttcaaatgtgtacctcatattaagactgggaatgccaa
atatacattcaacataaaatactgagtacctaggtagcttgtccttgaat
tgttctgctagttcagggccatagcagttgttcctcctaatggctggaat
gtgtgtgtccttaagcagcacagagttatcctgtggaagagcatctctga
aacagtctcggctccattacagtgaaaagggtgggttgactaggtagaag
aaggaaaaaaatctctccagatttgcaaactgatttgatgatgagttact
ttgggttttgctcctgagccagagtctttctgctaaattaatggaatgct
gaagcctcaataatacaaaacaaacaaacaaacaacaataacaacaaaaa
tgcagaaacttaactcttcgtagaataatcagtgtcttgaaagggtgagg
ccagatttcgagaagttcctgcaagatcaacatacttagaaggtaattgt
aataaaagctttgaaagagaaaaatgtaaaagacagacacttagacttga
tgttagaagatctaagtgtcgtttagtgtattggagaacaaaaatgtaga
caaagttatacagccacttaccccattaataaatgtcatcaatattcaaa
gtctgtgacaatctcagtaggaagaaaatcctgaacaagagacatacatg
ctggtcttaaacagaaaaattctgtaagacgaagaaagtaaccacataag
agtgaaagttgccattgcataaatccaggacttttaaaggattacttaaa
atacaaatgaaaattgggcatgcatagagcttagtaaagactttggaata
aatggaatttaccctaattttgatcttgcatttcaaaatattgtctgctc
acaaagtggagaggattgagttgggtggagcagctgactccctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125680360_125681478
seq2: B6Ng01-279M15.b_49_1167 (reverse)

seq1  CATCCAATTG-CCAGATGT--CTATAT-GGCACTTTTAAAAAATGCAGCT  46
      ||||| |||| ||||||||   ||||| ||||| ||||||||||||||||
seq2  CATCCCATTGCCCAGATGTTCTTATATGGGCAC-TTTAAAAAATGCAGCT  49

seq1  TTTTCTCCATCAGTCACCTTTCCTTTGTTCCGTTATTTCCTACAGAAAGA  96
      |||  ||||||||||| ||||||||||||||||||||| ||||||||  |
seq2  TTTCTTCCATCAGTCA-CTTTCCTTTGTTCCGTTATTT-CTACAGAAGAA  97

seq1  TCCCTGTATCCTCTGATGTTAGTGAATACTACTTCAGAAGCCATTCAGAG  146
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTATCCTCTGATGTTAGTGAATACTACTTCAGAAGCCATTCAGAG  147

seq1  TGCTCTAGTCTAGACCTGATGACTAGCTTTGTACACATCTTCCTAACTCA  196
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGTCTAGA-CTGATGACTAGCTTTGTACACATCTTCCTAACTCA  196

seq1  CCCAAATATAATCTTTTAAAATTCAATTTACTTCTACTTATATGTAAATG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATATAATCTTTTAAAATTCAATTTACTTCTACTTATATGTAAATG  246

seq1  TCTGTGTATGTACTCATGTGTGTCTGTACCCACAGAAGTCAGAATAGGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTATGTACTCATGTGTGTCTGTACCCACAGAAGTCAGAATAGGAC  296

seq1  ATCAGATCCTCAGGAGCTGGAGTTACCAGTAGTTCTGAACTAACTAAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCCTCAGGAGCTGGAGTTACCAGTAGTTCTGAACTAACTAAAAT  346

seq1  TTAATATGAACAATAATAGTTTCAGGATAGCTCCCTGAGTGTCCTTTGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGAACAATAATAGTTTCAGGATAGCTCCCTGAGTGTCCTTTGAC  396

seq1  TGGCCCACTTTCCTCTTTTTTACCATTTGTAAGTCTCAAGAATAACTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCACTTTCCTCTTTTTTACCATTTGTAAGTCTCAAGAATAACTGTG  446

seq1  CTAAAAATGCAACAATCTGAGAAATGGATAGACCTACTTACTTTCCCATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATGCAACAATCTGAGAAATGGATAGACCTACTTACTTTCCCATC  496

seq1  CCCACCAAAAGCAGGGTGGTTCTTAAACATTTTCAATCAGTATGCACTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAAAAGCAGGGTGGTTCTTAAACATTTTCAATCAGTATGCACTGT  546

seq1  GACGCTGGTATTTAAAAAAAAAGAAAAAAGAAAAGAAAAAAAGGCAGGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTGGTATTTAAAAAAAAAGAAAAAAGAAAAGAAAAAAAGGCAGGCT  596

seq1  ATGGGTCTCTATCCCAGGGTCTCCAGGCTACAGATGCCCATTCACATGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCTCTATCCCAGGGTCTCCAGGCTACAGATGCCCATTCACATGCT  646

seq1  CCAGGCAGCTTCTCAGACCTCTGGAGAACAGATTCGACAGATGCTTGGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGCTTCTCAGACCTCTGGAGAACAGATTCGACAGATGCTTGGGG  696

seq1  TATTTGTCCCTGTTTCCTCTAGCAGAGCTGCCTACACAACTTATTGCATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCCCTGTTTCCTCTAGCAGAGCTGCCTACACAACTTATTGCATG  746

seq1  TATGGGCTTTTCTGCATCTCAGGACTCCAAAAAGTCAGTGGCCATTGAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCTTTTCTGCATCTCAGGACTCCAAAAAGTCAGTGGCCATTGAAA  796

seq1  AAAAATGAGCTATCTTAATAAATAATATATCTGGTTGATATACACCCCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAGCTATCTTAATAAATAATATATCTGGTTGATATACACCCCTT  846

seq1  TTAGTGATATAATATATGCAATTGCAAGAGATCTGAGTGATGGTTATCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATATAATATATGCAATTGCAAGAGATCTGAGTGATGGTTATCAC  896

seq1  TTTTTAAAATCTTTTTTTTTTTACTGTTATTTCTGATTTTAATTGGTGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATCTTTTTTTTTTTACTGTTATTTCTGATTTTAATTGGTGAA  946

seq1  TAGCTTCCCTGTAATGTTAAAAGAAAACAGTTTTTCACAAATAACTCATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCCTGTAATGTTAAAAGAAAACAGTTTTTCACAAATAACTCATT  996

seq1  CTTCTCTGCCCATTCTGGTCCCTAAATGGATCCAGGTACTTGCTTGAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGCCCATTCTGGTCCCTAAATGGATCCAGGTACTTGCTTGAATT  1046

seq1  ATAAGTACATATATGAGTCCCCTTTTCCTGACTTTTCAATTTCACATTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACATATATGAGTCCCCTTTTCCTGACTTTTCAATTTCACATTTT  1096

seq1  AATATGACCCTGAGCGAGAATTC  1119
      |||||||||||||||||||||||
seq2  AATATGACCCTGAGCGAGAATTC  1119


seq1: chr3_125549621_125550717
seq2: B6Ng01-279M15.g_66_1160

seq1  GAATTCAAATGAGATTGTTTAGCAAAGAGGAATTTCCATGCCCACCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGAGATTGTTTAGCAAAGAGGAATTTCCATGCCCACCAAGG  50

seq1  CAAACAAATAAATCACTACCTATATTCTGTGAATGTTTTCAAACAGACCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATAAATCACTACCTATATTCTGTGAATGTTTTCAAACAGACCG  100

seq1  TGTTTAATGACATGGACTGTATTTATAACTGAGTTTATATTCACGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATGACATGGACTGTATTTATAACTGAGTTTATATTCACGCCTTT  150

seq1  TCTGTTTTACTTTTCAAATGTGTACCTCATATTAAGACTGGGAATGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTACTTTTCAAATGTGTACCTCATATTAAGACTGGGAATGCCAA  200

seq1  ATATACATTCAACATAAAATACTGAGTACCTAGGTAGCTTGTCCTTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATTCAACATAAAATACTGAGTACCTAGGTAGCTTGTCCTTGAAT  250

seq1  TGTTCTGCTAGTTCAGGGCCATAGCAGTTGTTCCTCCTAATGGCTGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGCTAGTTCAGGGCCATAGCAGTTGTTCCTCCTAATGGCTGGAAT  300

seq1  GTGTGTGTCCTTAAGCAGCACAGAGTTATCCTGTGGAAGAGCATCTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCCTTAAGCAGCACAGAGTTATCCTGTGGAAGAGCATCTCTGA  350

seq1  AACAGTCTCGGCTCCATTACAGTGAAAAGGGTGGGTTGACTAGGTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTCGGCTCCATTACAGTGAAAAGGGTGGGTTGACTAGGTAGAAG  400

seq1  AAGGAAAAAAATCTCTCCAGATTTGCAAACTGATTTGATGATGAGTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAATCTCTCCAGATTTGCAAACTGATTTGATGATGAGTTACT  450

seq1  TTGGGTTTTGCTCCTGAGCCAGAGTCTTTCTGCTAAATTAATGGAATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTGCTCCTGAGCCAGAGTCTTTCTGCTAAATTAATGGAATGCT  500

seq1  GAAGCCTCAATAATACAAAACAAACAAACAAACAACAATAACAACAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCAATAATACAAAACAAACAAACAAACAACAATAACAACAAAAA  550

seq1  TGCAGAAACTTAACTCTTCGTAGAATAATCAGTGTCTTGAAAGGGTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAACTTAACTCTTCGTAGAATAATCAGTGTCTTGAAAGGGTGAGG  600

seq1  CCAGATTTCGAGAAGTTCCTGCAAGATCAACATACTTAGAAGGTAATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTCGAGAAGTTCCTGCAAGATCAACATACTTAGAAGGTAATTGT  650

seq1  AATAAAAGCTTTGAAAGAGAAAAATGTAAAAGACAGACACTTAGACTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCTTTGAAAGAGAAAAATGTAAAAGACAGACACTTAGACTTGA  700

seq1  TGTTAGAAGATCTAAGTGTCGTTTAGTGTATTGGAGAACAAAAATGTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAAGATCTAAGTGTCGTTTAGTGTATTGGAGAACAAAAATGTAGA  750

seq1  CAAAGTTATACAGCCACTTACCCCATTAATAAATGTCATCAATATTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTATACAGCCACTTACCCCATTAATAAATGTCATCAATATTCAAA  800

seq1  GTCTGTGACAATCTCAGTAGGAAGAAAATCCTGAACAAGAGACATACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGACAATCTCAGTAGGAAGAAAATCCTGAACAAGAGACATACATG  850

seq1  CTGGTCTTAAACAGAAAAATTCTGTAAGACGAAGAAAGTAACCACATAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTAAACAGAAAAATTCTGTAAGACGAAGAAAGTAACCACATAAG  900

seq1  AGTGAAAGTTGCCATTGCATAAATCCA-GACTTTTAAAGGATTACTTAAA  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTGAAAGTTGCCATTGCATAAATCCAGGACTTTTAAAGGATTACTTAAA  950

seq1  ATACAAATGAAAATT-GGCATGCATAGGAGCTTAGTAAAGACTTTGGAAT  998
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  ATACAAATGAAAATTGGGCATGCATA-GAGCTTAGTAAAGACTTTGGAAT  999

seq1  AAATGGAATTTACCCTAAATTTTTGATCTTGCATTTCAAAATATTGTCTG  1048
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  AAATGGAATTTACCCTAA--TTTTGATCTTGCATTTCAAAATATTGTCTG  1047

seq1  CTCACAAAGT-GAGAGGATTGAGTTGGGTGGAGCCAGGCTGACTCCCTGA  1097
      |||||||||| |||||||||||||||||||||||   |||||||||||||
seq2  CTCACAAAGTGGAGAGGATTGAGTTGGGTGGAGC--AGCTGACTCCCTGA  1095


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