BAC Information

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BAC

Clone NameB6Ng01-280A15
Chromosome3 (Build37)
Map Location 72,165,765 - 72,166,833
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280A15.bB6Ng01-280A15.g
ACCGA079869GA079870
length1,0691,187
definitionB6Ng01-280A15.b B6Ng01-280A15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattaaaaatgaaaaaatgttaacatttatatacaattgtacagt
atcagacagagacatagcagtcttgaacaaaaaattggaattattgcaat
tccagactttaaattttacttgggttatgacatttgtgataatgatcttt
caggtgtgcatattttccaggcttgtaaattcatagggacttccactgag
atttcaaagcaaaggctaagagtacaaatgatgtgttatggggtcagaga
tctccaaaacatttctcagcagggcaataaactataaaattataatgaag
accaatggaagatgggaacagtatgcactgcctatcagggaaagattgag
aaagcaacaaaaattgccaaagggagcaactatgtggtctacaagccata
gacattgcactgatacactactaggaagttcatatcaaactaaactgtgt
cctagattctggacatgaaaattaggcagtaatttttgttagatattgtc
tatcccttaactctatctcattctcctaatcatctatctctttctttcag
agctagagtattcatcatatgccttacatagaggcattgattatattgtt
gatttttctgttttttatctcttaaatacgtttattaaatttgtccttga
aattttgaataatgtttggaaaattaaagcattaggttgcatttgtaaaa
ttggtgcattttccctaatgagttgacaagagcattctggggaacatatc
agggcagaacattactgatgtgatgagttttctccaaagtggttgctcat
aatcatataacctcaccttatggcttataatattgccactcacaagggaa
tacttttgtataggaaaggctcttgagggaggtgtgtgggacttttaggg
tggtgagaattcttgatggtccttggattaatgggcacatttttcaatgg
aattataaggaactagctaatctacttccttaaaattagtggtgagagca
actgcatacttctatattttgctctcctcttcaccagatatttaagccat
tgggcctactaagtttgaa
gaattccttaaagaaaaacaagaaagcacatccaagcaggtgatggaaat
gaacaaaaccatactagacctaaaaaggaagtagacacaaaaaagaaaag
ccaaagtgaggcaaccctggagatagaaaccctaggaaagaaatctggaa
ccatagatgcgagcatcagcaacagaatacaagagatggaagagagaaac
tcaggtgcagaagattccatagagaacatcagcacaacaaacaaagaaaa
tgcagaatgcaaaaagatcctaactcaaaacatccaggaaatccaggaca
caatgagaagaccaaacctacggataataggagtagatgagaatgaagat
tttcaacttaaagggccagcaaatattttcaacaaaataatagaagaaaa
cttcccaaacctaaagaaagagaagcccatgaacatacaagaagcctaca
gaactccaaatatactggaccagaaaagaaatttctcctgacacataata
atcagaacaacaactgcactaaataaagatagaatattaaaagcagtaag
gaaaaaaggtcaagtaacatataaaggcagacctatcagaattacaccag
agttttcaccagagattatgaaagccagaagatcctggacagatgttata
cagacaccatgagaacacaaatgccagcccaggctactatacccagccaa
actctcaattaccataatggagaaaccaaagtattccatgacaaaaccaa
attcacacattatctttccacgaatccagaccttcaaaggataataacag
aaaaaaaccaatgcaaggacagaaaccacaccctaggaaagtaagaaagt
aattcttcaacaaaccaaaaagaagagagccacaagaacagaatgccaac
tctaacaacaaaaataataggaagcaacaatttcttttctttaatatctc
cttaataacaatggactcaattatccaataaaaagaacatagactaacag
actggctacacaaataggacccacattttgctgcttacaggaaaccgatc
tcagaaaaaagaacagaacactgccttagaatgaatgctgaaacagttca
gcaattgttctgaagaaacagctggagtagccatcctaatgaataatcac
tccaaccaagctatccaaaaagacagggagggaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72165765_72166833
seq2: B6Ng01-280A15.b_43_1111 (reverse)

seq1  TTCAAACTTAGTA-GCCCAATTGCTTTAAATATCTGGTGAAGA-GAGAGC  48
      ||||||||||||| ||||||| || |||||||||||||||||| ||||||
seq2  TTCAAACTTAGTAGGCCCAATGGC-TTAAATATCTGGTGAAGAGGAGAGC  49

seq1  AAATAATAGAAGTATGCAGTTGCTCTCACCACTAAATTTTTAAGGAAGTA  98
      |||  ||||||||||||||||||||||||||||||  |||||||||||||
seq2  AAAATATAGAAGTATGCAGTTGCTCTCACCACTAA--TTTTAAGGAAGTA  97

seq1  GATTAGCTAGTTCCTTATAATTTCATTTGAAAAATGTGCCCATTAATCCA  148
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  GATTAGCTAGTTCCTTATAATTCCA-TTGAAAAATGTGCCCATTAATCCA  146

seq1  AGGACCATCAAGAATTCTCACCA-CCTAAAAGT-CCACACACCTCCCTCA  196
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  AGGACCATCAAGAATTCTCACCACCCTAAAAGTCCCACACACCTCCCTCA  196

seq1  AGAGCCTTTCCTATACAAAAGTATTCCCTTGTGAGTGGCAATATTATAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTTCCTATACAAAAGTATTCCCTTGTGAGTGGCAATATTATAAG  246

seq1  CCATAAGGTGAGGTTATATGATTATGAGCAACCACTTTGGAGAAAACTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGGTGAGGTTATATGATTATGAGCAACCACTTTGGAGAAAACTCA  296

seq1  TCACATCAGTAATGTTCTGCCCTGATATGTTCCCCAGAATGCTCTTGTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCAGTAATGTTCTGCCCTGATATGTTCCCCAGAATGCTCTTGTCA  346

seq1  ACTCATTAGGGAAAATGCACCAATTTTACAAATGCAACCTAATGCTTTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTAGGGAAAATGCACCAATTTTACAAATGCAACCTAATGCTTTAA  396

seq1  TTTTCCAAACATTATTCAAAATTTCAAGGACAAATTTAATAAACGTATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAACATTATTCAAAATTTCAAGGACAAATTTAATAAACGTATTT  446

seq1  AAGAGATAAAAAACAGAAAAATCAACAATATAATCAATGCCTCTATGTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAAAAAACAGAAAAATCAACAATATAATCAATGCCTCTATGTAA  496

seq1  GGCATATGATGAATACTCTAGCTCTGAAAGAAAGAGATAGATGATTAGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATGATGAATACTCTAGCTCTGAAAGAAAGAGATAGATGATTAGGA  546

seq1  GAATGAGATAGAGTTAAGGGATAGACAATATCTAACAAAAATTACTGCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGATAGAGTTAAGGGATAGACAATATCTAACAAAAATTACTGCCT  596

seq1  AATTTTCATGTCCAGAATCTAGGACACAGTTTAGTTTGATATGAACTTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCATGTCCAGAATCTAGGACACAGTTTAGTTTGATATGAACTTCC  646

seq1  TAGTAGTGTATCAGTGCAATGTCTATGGCTTGTAGACCACATAGTTGCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTGTATCAGTGCAATGTCTATGGCTTGTAGACCACATAGTTGCTC  696

seq1  CCTTTGGCAATTTTTGTTGCTTTCTCAATCTTTCCCTGATAGGCAGTGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGCAATTTTTGTTGCTTTCTCAATCTTTCCCTGATAGGCAGTGCA  746

seq1  TACTGTTCCCATCTTCCATTGGTCTTCATTATAATTTTATAGTTTATTGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTCCCATCTTCCATTGGTCTTCATTATAATTTTATAGTTTATTGC  796

seq1  CCTGCTGAGAAATGTTTTGGAGATCTCTGACCCCATAACACATCATTTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGAGAAATGTTTTGGAGATCTCTGACCCCATAACACATCATTTGT  846

seq1  ACTCTTAGCCTTTGCTTTGAAATCTCAGTGGAAGTCCCTATGAATTTACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGCCTTTGCTTTGAAATCTCAGTGGAAGTCCCTATGAATTTACA  896

seq1  AGCCTGGAAAATATGCACACCTGAAAGATCATTATCACAAATGTCATAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGAAAATATGCACACCTGAAAGATCATTATCACAAATGTCATAAC  946

seq1  CCAAGTAAAATTTAAAGTCTGGAATTGCAATAATTCCAATTTTTTGTTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAAAATTTAAAGTCTGGAATTGCAATAATTCCAATTTTTTGTTCA  996

seq1  AGACTGCTATGTCTCTGTCTGATACTGTACAATTGTATATAAATGTTAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTATGTCTCTGTCTGATACTGTACAATTGTATATAAATGTTAAC  1046

seq1  ATTTTTTCATTTTTAATGAATTC  1069
      |||||||||||||||||||||||
seq2  ATTTTTTCATTTTTAATGAATTC  1069