BAC Information

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BAC

Clone NameB6Ng01-280C15
Chromosome3 (Build37)
Map Location 45,890,717 - 45,891,272
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989, LOC545517, LOC383849
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280C15.bB6Ng01-280C15.g
ACCGA079960GA079961
length1,246550
definitionB6Ng01-280C15.b B6Ng01-280C15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccatttttattggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatactagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgccttttgccttgcagaaactttggagtttcat
tgggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctatatgtttaattgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttggctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ccacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctcggttttttgttattccagatga
atttgcaaattgctccttctaattcgttgaagaattgagttggaatttta
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttggtcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttcttaatttctttcttcagggacttgaagttttatcatacag
atctttcacttccttcgttagagtcacgccgagatattttatatatttgt
ggctattgagaaggggtgttgtttccctaatttctttctcagcctgttta
tctttgtgtaagagaaaggccattgacttgttttgagttatttttatatc
agctacttcacacgaggctgttttatcagggtttagagttctcctgttga
aattttaggtcctttaattactagtcaattcatctgccaaaagtggattt
ttgacctcccctttccaatttgaatcccttgaatcctttgtgtgccgaat
gctctcggctaactctcaggatacaatgagtagaagaaagtaagga

tttatatattttggaaattatctctctaacatatgtaccacttttaatcc
cagctccaggaggaagaaaaggaggatccactgagtgacatacgtatctt
aatagacacaattggggagcttcatattcagcatgataccctgtctcaaa
tggagcgtgatagaggaaagtaaataaatgtatacaggtgaatgcctatc
cctatacacatattcacaaatttgcataaccacaaataacatgcataacc
ttacagacatctgtattcattgtattcatttctcaggcaaattgctggaa
ttagaaaatatcatcctatgtgaggtaacatagtcacaaaagaccacaga
gtgtatatactcactgataaatgaatgttagggaaaaagcttagaatgcc
catgatatgacttacagaccatatgaagctcaagaagaaggaagaccaaa
gtgtggatgcttcaatcctacttagatgggacaacaaaataatcacagga
agtagaaggtgggagagatttgggaggaagagaagagggggagaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45890717_45891272
seq2: B6Ng01-280C15.g_67_622

seq1  GAATTCTTTATATATTTTGGAAATTATCTCTCTAACATATGTACCACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATATTTTGGAAATTATCTCTCTAACATATGTACCACTTT  50

seq1  TAATCCCAGCTCCAGGAGGAAGAAAAGGAGGATCCACTGAGTGACATACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCTCCAGGAGGAAGAAAAGGAGGATCCACTGAGTGACATACG  100

seq1  TATCTTAATAGACACAATTGGGGAGCTTCATATTCAGCATGATACCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAATAGACACAATTGGGGAGCTTCATATTCAGCATGATACCCTGT  150

seq1  CTCAAATGGAGCGTGATAGAGGAAAGTAAATAAATGTATACAGGTGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATGGAGCGTGATAGAGGAAAGTAAATAAATGTATACAGGTGAATG  200

seq1  CCTATCCCTATACACATATTCACAAATTTGCATAACCACAAATAACATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCCTATACACATATTCACAAATTTGCATAACCACAAATAACATGC  250

seq1  ATAACCTTACAGACATCTGTATTCATTGTATTCATTTCTCAGGCAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTACAGACATCTGTATTCATTGTATTCATTTCTCAGGCAAATTG  300

seq1  CTGGAATTAGAAAATATCATCCTATGTGAGGTAACATAGTCACAAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTAGAAAATATCATCCTATGTGAGGTAACATAGTCACAAAAGAC  350

seq1  CACAGAGTGTATATACTCACTGATAAATGAATGTTAGGGAAAAAGCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTGTATATACTCACTGATAAATGAATGTTAGGGAAAAAGCTTAG  400

seq1  AATGCCCATGATATGACTTACAGACCATATGAAGCTCAAGAAGAAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCATGATATGACTTACAGACCATATGAAGCTCAAGAAGAAGGAAG  450

seq1  ACCAAAGTGTGGATGCTTCAATCCTACTTAGATGGGACAACAAAATAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTGTGGATGCTTCAATCCTACTTAGATGGGACAACAAAATAATC  500

seq1  ACAGGAAGTAGAAGGTGGGAGAGATTTGGGAGGAAGAGAAGAGGGGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGTAGAAGGTGGGAGAGATTTGGGAGGAAGAGAAGAGGGGGAGA  550

seq1  GGAAGA  556
      ||||||
seq2  GGAAGA  556


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