BAC Information

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BAC

Clone NameB6Ng01-280F09
Chromosome3 (Build37)
Map Location 95,648,388 - 95,780,998
singlet/doubletdoublet
Overlap genePrpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897
Upstream genePogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327
Downstream geneLOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280F09.bB6Ng01-280F09.g
ACCGA080089GA080090
length1,0901,025
definitionB6Ng01-280F09.b B6Ng01-280F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,648,388 - 95,649,477)(95,779,980 - 95,780,998)
sequence
gaattcacaacttctaaaggatttgaaagataaactgccttattttttac
gcagtttacttagtcctctgactcttgtctctcctttcactcatactgta
gatatacattagtgggattctacgaaaacctcattctgagaagacaaaag
ggactatttaattaactacattcaatccaactctcccaagcacgtagatt
ttctgtagtaaattctaacatcaggttatcattcatcaaaagaagtcagg
aaactggctttgaactgttttcctcaactgttggtcaatggggagtgctc
tatacaagcagaaagcagtcaggaagagaaaccgagtaaacaataaatag
tctaagaatatagcacttaaaccaattacactgttttaaattatgtttct
atttcccaaaaatatggacctaaaagtgtctttgtgtcagcttctgagct
tctaaattacctttgtccgtaatcgttgagcaattttctcaaatttgccc
ttgtcatggaatttaaaagtgcgtctttggcgctgggaaggggcaattga
gactcgggggtcaaaaaaggtattagactccatgtcttctgatggctttt
cttttagctgctgcttgaactgttccctcttcacagcccgaatgtttgcc
ttcagggtgggcatgcgatgtgtgagctccacctccttgcctgtcgcatc
cacagtgcggccttgctcgtccaggatcaatggggtaggcttagtttggt
cttttaactctactttcctgaaaaaacaaaacatccctcagagaaataaa
tcctacatagaaccttgaagcaaggaaaacccaacagaaaacaaaaggag
tcaaaattatcaaagacaactgtaaattaaccttagggaaggcaatcttg
tcagtgcttaataaaatctccattaaaaaaaaaaatcagagtaaggggga
acagttaggagtgctggatactctagcagaggacctgggtttgagtttca
gctcccacttggggcttgcagctgtctgtaacttgagttctagggaatct
atgcctctttccgacctctgatgaacactattaccatgac
gaattccaagccagagcagagcaggctgagggcagggagggtgtgtctcg
cctcggcaatcctgagccacgacagccaggtatatcagacacaaccgcca
ggtttatatttttttttttcaactgtataatggtgcaaaagcaatctgca
ttcaccaaacttgactttgagtttgggtcttttctggggctgtgcattgg
atatgcaatctcaaagctgggcagtggctacagctcccagtcagccccat
gacacgggctctactgggaacaaagacataagatgtggaaggttatgtga
cctcaatgtgttctcagcctagtacagatattggggccatctaggttcta
gacatgacagatctgtggcctctgctacttaatgtttgtctcccctgaga
cttgatcccttgtactggtctctgttgtcttacatgagaataaaatgtgg
ctaaggtttgtttgccaaccatgaagagctgtataatatacagaaatctg
gggaaaaggagataggtcagttgttaaatgattggcatactgatgaagca
gaagccaatgacgtgggtggatgcccgggagctcactggccagcctggcc
tagcttattctgcagctctaagccaatgaaagtccctgtttcatttgata
aggtggacagtgactgaaaaacagcatcattttgaggtgaccaaggttga
cctctggcttccaaatacacacacacacacacacacacacacacacacac
acatatcattttttcaaaaacagaaacacatgaactccctaaaaggatat
cccttttcagggatgttcagcgagaggctgatgcatgagccacactctgg
gaaagaataaggatgcgtttgcatctaccatctttggcttaataagcatt
gtgccttttctaaattccattctggcaaggcctttccaagaaagtaaaat
gaaacaggttctttcccaatcaattgactcattagtctttcttaacacct
tgacccacctgggaattactgtcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95648388_95649477
seq2: B6Ng01-280F09.b_48_1137

seq1  GAATTCACAACTTCTAAAGGATTTGAAAGATAAACTGCCTTATTTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACTTCTAAAGGATTTGAAAGATAAACTGCCTTATTTTTTAC  50

seq1  GCAGTTTACTTAGTCCTCTGACTCTTGTCTCTCCTTTCACTCATACTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTACTTAGTCCTCTGACTCTTGTCTCTCCTTTCACTCATACTGTA  100

seq1  GATATACATTAGTGGGATTCTACGAAAACCTCATTCTGAGAAGACAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACATTAGTGGGATTCTACGAAAACCTCATTCTGAGAAGACAAAAG  150

seq1  GGACTATTTAATTAACTACATTCAATCCAACTCTCCCAAGCACGTAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATTTAATTAACTACATTCAATCCAACTCTCCCAAGCACGTAGATT  200

seq1  TTCTGTAGTAAATTCTAACATCAGGTTATCATTCATCAAAAGAAGTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGTAAATTCTAACATCAGGTTATCATTCATCAAAAGAAGTCAGG  250

seq1  AAACTGGCTTTGAACTGTTTTCCTCAACTGTTGGTCAATGGGGAGTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGCTTTGAACTGTTTTCCTCAACTGTTGGTCAATGGGGAGTGCTC  300

seq1  TATACAAGCAGAAAGCAGTCAGGAAGAGAAACCGAGTAAACAATAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAGCAGAAAGCAGTCAGGAAGAGAAACCGAGTAAACAATAAATAG  350

seq1  TCTAAGAATATAGCACTTAAACCAATTACACTGTTTTAAATTATGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAATATAGCACTTAAACCAATTACACTGTTTTAAATTATGTTTCT  400

seq1  ATTTCCCAAAAATATGGACCTAAAAGTGTCTTTGTGTCAGCTTCTGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCAAAAATATGGACCTAAAAGTGTCTTTGTGTCAGCTTCTGAGCT  450

seq1  TCTAAATTACCTTTGTCCGTAATCGTTGAGCAATTTTCTCAAATTTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTACCTTTGTCCGTAATCGTTGAGCAATTTTCTCAAATTTGCCC  500

seq1  TTGTCATGGAATTTAAAAGTGCGTCTTTGGCGCTGGGAAGGGGCAATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGGAATTTAAAAGTGCGTCTTTGGCGCTGGGAAGGGGCAATTGA  550

seq1  GACTCGGGGGTCAAAAAAGGTATTAGACTCCATGTCTTCTGATGGCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGGGGGTCAAAAAAGGTATTAGACTCCATGTCTTCTGATGGCTTTT  600

seq1  CTTTTAGCTGCTGCTTGAACTGTTCCCTCTTCACAGCCCGAATGTTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGCTGCTGCTTGAACTGTTCCCTCTTCACAGCCCGAATGTTTGCC  650

seq1  TTCAGGGTGGGCATGCGATGTGTGAGCTCCACCTCCTTGCCTGTCGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTGGGCATGCGATGTGTGAGCTCCACCTCCTTGCCTGTCGCATC  700

seq1  CACAGTGCGGCCTTGCTCGTCCAGGATCAATGGGGTAGGCTTAGTTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCGGCCTTGCTCGTCCAGGATCAATGGGGTAGGCTTAGTTTGGT  750

seq1  CTTTTAACTCTACTTTCCTGAAAAAACAAAACATCCCTCAGAGAAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAACTCTACTTTCCTGAAAAAACAAAACATCCCTCAGAGAAATAAA  800

seq1  TCCTACATAGAACCTTGAAGCAAGGAAAACCCAACAGAAAACAAAAGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACATAGAACCTTGAAGCAAGGAAAACCCAACAGAAAACAAAAGGAG  850

seq1  TCAAAATTATCAAAGACAACTGTAAATTAACCTTAGGGAAGGCAATCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTATCAAAGACAACTGTAAATTAACCTTAGGGAAGGCAATCTTG  900

seq1  TCAGTGCTTTATAAAATCTCCATTAAAAAAAAAAATCAGAGTAAGGGG--  948
      ||||||||| ||||||||||||||||||||||||||||||||||||||  
seq2  TCAGTGCTTAATAAAATCTCCATTAAAAAAAAAAATCAGAGTAAGGGGGA  950

seq1  ACAGTTAGGAGTGCTGGATACTCTAGCAGAGGACCTGGGTTTGAGTTTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGGAGTGCTGGATACTCTAGCAGAGGACCTGGGTTTGAGTTTCA  1000

seq1  GCTCCCACTTGGGGCTTGCAGCTGTCTGTAACTTGAGTTCTAGGGAATCC  1048
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTCCCACTTGGGGCTTGCAGCTGTCTGTAACTTGAGTTCTAGGGAAT-C  1049

seq1  TATGCCTCTTTCCGACCTCTGATG-ACACTATTTACCCATGAC  1090
      |||||||||||||||||||||||| ||||||||   |||||||
seq2  TATGCCTCTTTCCGACCTCTGATGAACACTATT--ACCATGAC  1090

seq1: chr3_95779980_95780998
seq2: B6Ng01-280F09.g_68_1092 (reverse)

seq1  TCGACAAGTAATTCCCAGTTGGCTCAA-GTGTT-AGAGAGACTTAATGAG  48
      ||||| |||||||||||| ||| |||| ||||| ||| |||| |||||||
seq2  TCGAC-AGTAATTCCCAGGTGGGTCAAGGTGTTAAGAAAGAC-TAATGAG  48

seq1  TCAATGGA-TGGGAAAGGACCTGTTTCATTTTACTTTCTTGGAAA-GCCT  96
      ||||| || |||||||| ||||||||||||||||||||||||||| ||||
seq2  TCAATTGATTGGGAAAGAACCTGTTTCATTTTACTTTCTTGGAAAGGCCT  98

seq1  TGCCAGAATGGAATTTAG-AAAGGCAC-ATGC-TATTAAGCCAAAGATGG  143
      |||||||||||||||||| |||||||| |||| |||||||||||||||||
seq2  TGCCAGAATGGAATTTAGAAAAGGCACAATGCTTATTAAGCCAAAGATGG  148

seq1  TAGATGCAAACGCATCC-TATTCTTTCCCAGAGTGTGGCTCCTGCATCAG  192
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  TAGATGCAAACGCATCCTTATTCTTTCCCAGAGTGTGGCTCATGCATCAG  198

seq1  CCTCTCGCTGAACATCCCTGAAAAGGGATATCC-TTTAGGGAGTTCATGT  241
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CCTCTCGCTGAACATCCCTGAAAAGGGATATCCTTTTAGGGAGTTCATG-  247

seq1  TGTTTCTGTTTTTGAAAAAATGATGTGTGTGTGTGTGTGTGTGTGTGTGT  291
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTTTCTGTTTTTGAAAAAATGATATGTGTGTGTGTGTGTGTGTGTGTGT  297

seq1  GTGTGTGTGTGTATTTGGAAGCCAGAGGTCAACCTTGGTCACCTCAAAAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTATTTGGAAGCCAGAGGTCAACCTTGGTCACCTCAAAAT  347

seq1  GATGCTGTTTTTCAGTCACTGTCCACCTTATCAAATGAAACAGGGACTTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTTTTTCAGTCACTGTCCACCTTATCAAATGAAACAGGGACTTT  397

seq1  CATTGGCTTAGAGCTGCAGAATAAGCTAGGCCAGGCTGGCCAGTGAGCTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCTTAGAGCTGCAGAATAAGCTAGGCCAGGCTGGCCAGTGAGCTC  447

seq1  CCGGGCATCCACCCACGTCATTGGCTTCTGCTTCATCAGTATGCCAATCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCATCCACCCACGTCATTGGCTTCTGCTTCATCAGTATGCCAATCA  497

seq1  TTTAACAACTGACCTATCTCCTTTTCCCCAGATTTCTGTATATTATACAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAACTGACCTATCTCCTTTTCCCCAGATTTCTGTATATTATACAG  547

seq1  CTCTTCATGGTTGGCAAACAAACCTTAGCCACATTTTATTCTCATGTAAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATGGTTGGCAAACAAACCTTAGCCACATTTTATTCTCATGTAAG  597

seq1  ACAACAGAGACCAGTACAAGGGATCAAGTCTCAGGGGAGACAAACATTAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAGACCAGTACAAGGGATCAAGTCTCAGGGGAGACAAACATTAA  647

seq1  GTAGCAGAGGCCACAGATCTGTCATGTCTAGAACCTAGATGGCCCCAATA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGAGGCCACAGATCTGTCATGTCTAGAACCTAGATGGCCCCAATA  697

seq1  TCTGTACTAGGCTGAGAACACATTGAGGTCACATAACCTTCCACATCTTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTAGGCTGAGAACACATTGAGGTCACATAACCTTCCACATCTTA  747

seq1  TGTCTTTGTTCCCAGTAGAGCCCGTGTCATGGGGCTGACTGGGAGCTGTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGTTCCCAGTAGAGCCCGTGTCATGGGGCTGACTGGGAGCTGTA  797

seq1  GCCACTGCCCAGCTTTGAGATTGCATATCCAATGCACAGCCCCAGAAAAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGCCCAGCTTTGAGATTGCATATCCAATGCACAGCCCCAGAAAAG  847

seq1  ACCCAAACTCAAAGTCAAGTTTGGTGAATGCAGATTGCTTTTGCACCATT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACTCAAAGTCAAGTTTGGTGAATGCAGATTGCTTTTGCACCATT  897

seq1  ATACAGTTGAAAAAAAAAAATATAAACCTGGCGGTTGTGTCTGATATACC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTGAAAAAAAAAAATATAAACCTGGCGGTTGTGTCTGATATACC  947

seq1  TGGCTGTCGTGGCTCAGGATTGCCGAGGCGAGACACACCCTCCCTGCCCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCGTGGCTCAGGATTGCCGAGGCGAGACACACCCTCCCTGCCCT  997

seq1  CAGCCTGCTCTGCTCTGGCTTGGAATTC  1019
      ||||||||||||||||||||||||||||
seq2  CAGCCTGCTCTGCTCTGGCTTGGAATTC  1025