BAC Information

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BAC

Clone NameB6Ng01-280K18
Chromosome3 (Build37)
Map Location 159,495,302 - 159,496,364
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668905, LOC668907, Depdc1a, Rpe65
Downstream geneGpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280K18.bB6Ng01-280K18.g
ACCGA080340GA080341
length1,0681,197
definitionB6Ng01-280K18.b B6Ng01-280K18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacagaagctcctatgtaactcatgttaaaaagattctgtgaca
tattctcagctctgttcttcttcatgttagctatatcttgaacttacaaa
aagagacaacttaaaataccatgcaaggctgtgaaagtaagtagaactca
agccctaccatccctggatattcattcttgctctctctgagttctaggaa
aacctttcttgctgtttctaagataatcatttcagagatggtagacctct
tctctactcatatgcctcactcttgtctctttcttgtgatttgactctca
ttcagagtaaatttcctccaataaaacctaaagtatttacatttcttcct
ttgtggtagtaattttctgctaagggttgttccaaggtaaagactaagtt
tgcaagttaagtgacccatacaagtaactattaagcacaatcccagtgta
ttggatgcacctttgaaaaataaacattagcagagatatgcacataaaat
taattttgactcaagtaatgtacaaattgattcatatatttgtatatatt
ttggtcatggtatgaattcttctttgcttaagagttctagatactttaca
gatatttagtttatttactgattgttagtgtgtcatgagtatttatgtgt
gggattgtgccaaagcatgtgtgtagagatcagaggacaatatatggaaa
tcagttctgactttctacctattggttttagggatcaaagtgaggtcatt
ggctttaacagaaagtgcatttttttttttttttttgctaagccatttct
atagatactataaatatccattgtaagtaactatttatgaaggaaaaaaa
atcactatttctgatatataacaatacttctgaaattatatataagttga
aacactttgggtttcaattatacttttccttttgcccatatatgttgtat
gttgtaagattgtcacatgtttggcatagaaaaaagagatttgctatcat
gatactacctcccgtatgtctttagaatatattttcattgaattctcttt
taacaccttcccttagcc
gaattcaattcccataaaacttccaacacaattcttttcagaccttgaaa
gagcaattctcaaatccatatggaaaatcaaaaaaatccaaggtaggtaa
aacaatcctgtataatgaaaaaaattctggatgtattatcatcatgcctg
atttcaaactttactacataacaatagtactaaaaactacaaagtattag
cataaaaacagacaattggtaaatggaatagaatccaagacccagaaata
aacccacacacctgtggacacttgatatatgacaaagaagcaaaacacat
acaaaggaaaaagaagagcatcttcaacaaattatgctggtctaactgga
tgtctggatatacaaaaatgcaagtagaccaatatctatcaccctgcaca
aaaatcaagtcgaagtagataaagaccttaatgttaaactgtacacacta
aatctaataaagaaaaagtggagaactgccatgaactcactggcacatga
ggtaaattcatgaacaaaacaccaatagttcatgcaaaattaataaatgg
gacctcatgaaactgaaaagttttttcaaggctaagcacaccaccaatag
gacaaaagggcagcctacagaatgggaaaaggtcttcacaaaccctaaca
tctgacagaggaataatatccaaaatttataaagagctcaagaaactaga
catcaacaaaccaaataatctaatttttaaaatagacagagctaaacaga
attctcaacagaagaatctctaatggttgaaacgcacctagaaaatgttc
aacatccttagttatcaggaaatacaaatcaaaacaaccctgagatttta
ctttacaccaattagaatggctaagatcatattgttgttccacctatagg
gttgcagattcctttagctccttgggtactttctctagctcctccattgg
gggccctgtgatccatcccattagctgactgtgagcatccacttccgtgg
ttttgctaagcccagcaatacctcacaagaagaacagctatatcaagggt
cttcagcaaatcttactaggtgtatgcaatgtgtcagcgtttgggaggct
gaatatggatgattcccagtatgcagtctctactaatctctggaatcggt
gatcctagctgcaataggtatacagaacgagtggccttaatttcggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_159495302_159496364
seq2: B6Ng01-280K18.b_45_1112 (reverse)

seq1  GGCTAAGGGAAGGTG-TAAAAGAGAA-TCAATGAAAAATAAAATTCTAAA  48
      ||||||||||||||| |||||||||| ||||||||||   | ||||| ||
seq2  GGCTAAGGGAAGGTGTTAAAAGAGAATTCAATGAAAA--TATATTCT-AA  47

seq1  AGACAATAGGGAGGTAGTATTCATGATAGCAAATCTCTTTTTTCTATGCC  98
      |||||   ||||||||||| ||||||||||||||||||||||||||||||
seq2  AGACATACGGGAGGTAGTA-TCATGATAGCAAATCTCTTTTTTCTATGCC  96

seq1  AAACATGTGAC-ATCTTACAAACATACAACATATATGGGCAAAAGGAAAA  147
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  AAACATGTGACAATCTTAC-AACATACAACATATATGGGCAAAAGGAAAA  145

seq1  GTATAATTGAAACCC-AAGTGTTTCAA-TTATATATAA-TTCAGAAGTA-  193
      ||||||||||||||| ||||||||||| |||||||||| |||||||||| 
seq2  GTATAATTGAAACCCAAAGTGTTTCAACTTATATATAATTTCAGAAGTAT  195

seq1  TGTTATATATCAGAAATAGTGATTTTTTTTCC-TCATAAATAGTTACTTA  242
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTATATATCAGAAATAGTGATTTTTTTTCCTTCATAAATAGTTACTTA  245

seq1  CAATGGATATTTATAGTATCTATAGAAATGGCTTAGC--AAAAAAAAAAA  290
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CAATGGATATTTATAGTATCTATAGAAATGGCTTAGCAAAAAAAAAAAAA  295

seq1  AAAATGCACTTTCTGTTAAAGCCAATGACCTCACTTTGATCCCTAAAACC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCACTTTCTGTTAAAGCCAATGACCTCACTTTGATCCCTAAAACC  345

seq1  AATAGGTAGAAAGTCAGAACTGATTTCCATATATTGTCCTCTGATCTCTA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTAGAAAGTCAGAACTGATTTCCATATATTGTCCTCTGATCTCTA  395

seq1  CACACATGCTTTGGCACAATCCCACACATAAATACTCATGACACACTAAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCTTTGGCACAATCCCACACATAAATACTCATGACACACTAAC  445

seq1  AATCAGTAAATAAACTAAATATCTGTAAAGTATCTAGAACTCTTAAGCAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTAAATAAACTAAATATCTGTAAAGTATCTAGAACTCTTAAGCAA  495

seq1  AGAAGAATTCATACCATGACCAAAATATATACAAATATATGAATCAATTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATTCATACCATGACCAAAATATATACAAATATATGAATCAATTT  545

seq1  GTACATTACTTGAGTCAAAATTAATTTTATGTGCATATCTCTGCTAATGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTACTTGAGTCAAAATTAATTTTATGTGCATATCTCTGCTAATGT  595

seq1  TTATTTTTCAAAGGTGCATCCAATACACTGGGATTGTGCTTAATAGTTAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCAAAGGTGCATCCAATACACTGGGATTGTGCTTAATAGTTAC  645

seq1  TTGTATGGGTCACTTAACTTGCAAACTTAGTCTTTACCTTGGAACAACCC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGGGTCACTTAACTTGCAAACTTAGTCTTTACCTTGGAACAACCC  695

seq1  TTAGCAGAAAATTACTACCACAAAGGAAGAAATGTAAATACTTTAGGTTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGAAAATTACTACCACAAAGGAAGAAATGTAAATACTTTAGGTTT  745

seq1  TATTGGAGGAAATTTACTCTGAATGAGAGTCAAATCACAAGAAAGAGACA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAGGAAATTTACTCTGAATGAGAGTCAAATCACAAGAAAGAGACA  795

seq1  AGAGTGAGGCATATGAGTAGAGAAGAGGTCTACCATCTCTGAAATGATTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGGCATATGAGTAGAGAAGAGGTCTACCATCTCTGAAATGATTA  845

seq1  TCTTAGAAACAGCAAGAAAGGTTTTCCTAGAACTCAGAGAGAGCAAGAAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAAACAGCAAGAAAGGTTTTCCTAGAACTCAGAGAGAGCAAGAAT  895

seq1  GAATATCCAGGGATGGTAGGGCTTGAGTTCTACTTACTTTCACAGCCTTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCCAGGGATGGTAGGGCTTGAGTTCTACTTACTTTCACAGCCTTG  945

seq1  CATGGTATTTTAAGTTGTCTCTTTTTGTAAGTTCAAGATATAGCTAACAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATTTTAAGTTGTCTCTTTTTGTAAGTTCAAGATATAGCTAACAT  995

seq1  GAAGAAGAACAGAGCTGAGAATATGTCACAGAATCTTTTTAACATGAGTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAACAGAGCTGAGAATATGTCACAGAATCTTTTTAACATGAGTT  1045

seq1  ACATAGGAGCTTCTGTTGAATTC  1063
      |||||||||||||||||||||||
seq2  ACATAGGAGCTTCTGTTGAATTC  1068