BAC Information

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BAC

Clone NameB6Ng01-280M21
Chromosome3 (Build37)
Map Location 80,586,243 - 80,587,414
singlet/doubletsinglet
Overlap geneGria2
Upstream geneTmem144, 1110032E23Rik, EG626797
Downstream geneGlrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280M21.bB6Ng01-280M21.g
ACCGA080441GA080442
length1,1261,169
definitionB6Ng01-280M21.b B6Ng01-280M21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttcattagggtgcgaaccaggtcatcaggctcctccctcagga
cctaattcctattcattatgctttctcctaagaccttctcatttcaaatt
aaatagagtttcaatataggtggttttgagaacataaacattctaaacag
cagagatatgcttctttatgagataaaattggcttggtaagtatcataga
agtcttaaaaagaacatataaaagataacattttcctttattttttccca
cagtaaacatcctaagagctaatgttgtgttttaaaagacactgagtatt
acattttatctaaatattttattctgcctcatttttcctgattgaactag
ttacattcatgtagtgaccaaatgtgtatcaggtagacacttgagggggg
aagggcttactttggcttacagtttcaggttccatcatagcagggaaggc
atctggacatgcagagtttgggctaaaatacattcttttgatataattta
tattggggttatggtctactgaatatcagcatgtagaaaaaatgcaagta
gatccatatttatcaccctgcacaaaactcaagtcccagtggaatcaaag
attttgacacaaagcagatacactaaaattgatagaaaagaaagtgaaga
atagtctcgaggcattggcacaggaaacaactatatgaacagaacaccaa
tcatacaggcactaatatcaacattatccaatagggacctcatgggaact
gaaaagcttctgtaaggcaaaggacatcatcaaaaggacaaaacagcagt
cttgagaatgggataagattttttttttttaccagttccacatctggcag
agattgatatccaaatatataaagaactcaggaaactagacaatacaaac
caaatattcaattaaaacaggtatagatctatacagagaatctcaacaga
ggaatctcaatggccagatcattacagaatgtcacatcttagcatcagaa
aacaaatcaactactctgaacttcatgatactgtgaatgctaatccaatc
ccagtgacctatttgaagactatggacagtgacctctcatggttcagagt
aaacctgccaatactggactcatgta
gaattcaaccatacagctatagttgcaaagacgatcaactttcaattgtt
ttcagaagttatataaaaagataaatttagaaatcccaaatgaaagtaga
tttaatattacaatcttaaatatttcatatgtaatcatatttcctaaggc
agttaaaattgagataaaaataactatgagaaagaaataattccctaagc
ttggctgtaaacaacagattgcatcctctttgtttccctatatgtcattc
cagagagcctaagagggtgaatggcctcttgtttttgttcatgtatatga
aatcatgccacgctgcgaaagcaaagagcatatgtacattcccaaggagt
caactgaaggaaaaggagtttaaataatggcagaaacaaaggcagtaaga
tataagacaaaatttcttgagaagaaaccaatcatgatttaaaaaaaaat
gtaatggaaattattagggaaaataccacttcttatcttaatattctgga
ggtctgtcctgccattttgtgactccatttcatttctctcatatttccaa
tcacacttaaaatctttaaaatttgcatctatagggaattaatgatatct
tcagaaaaagaaaagaaaaagaaaactgatgcatttccacaatgcattag
cgttctaaggaaaccagctgaacactctagggctggccattagcttggac
gtcctttgagtgacatggagtttcaagttcactactgctcagataaggag
ggggcacaagcagagcagattcttcacaaaggaagtccaagttcattttg
ctgactttaaactcagcaatacaaaccaacccagaagtagatatgagatg
tcacctaaattattgcctgaaattttaaaataaaatagcagagttttttg
aggacataaaggacatcaagccttccctttgtgcctttggcacactcaac
acaacaactttcactttacaaacctgcttccattatgtatacgaaccgac
tttctccctgttgataaatgctggccattcccccatgtttttagaataca
tgaaactgggaaaaataatactgttagaacatagaatattctttggccag
tactgagttagctaatattttctatccatgcagtacttttcaccagaact
gaagaagaattaaagtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80586243_80587414
seq2: B6Ng01-280M21.g_65_1233

seq1  GAATTCAACCATACAGCTATAGTTGCAAAGACGATCAACTTTCAATTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCATACAGCTATAGTTGCAAAGACGATCAACTTTCAATTGTT  50

seq1  TTCAGAAGTTATATAAAAAGATAAATTTAGAAATCCCAAATGAAAGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGTTATATAAAAAGATAAATTTAGAAATCCCAAATGAAAGTAGA  100

seq1  TTTAATATTACAATCTTAAATATTTCATATGTAATCATATTTCCTAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTACAATCTTAAATATTTCATATGTAATCATATTTCCTAAGGC  150

seq1  AGTTAAAATTGAGATAAAAATAACTATGAGAAAGAAATAATTCCCTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAATTGAGATAAAAATAACTATGAGAAAGAAATAATTCCCTAAGC  200

seq1  TTGGCTGTAAACAACAGATTGCATCCTCTTTGTTTCCCTATATGTCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTAAACAACAGATTGCATCCTCTTTGTTTCCCTATATGTCATTC  250

seq1  CAGAGAGCCTAAGAGGGTGAATGGCCTCTTGTTTTTGTTCATGTATATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCCTAAGAGGGTGAATGGCCTCTTGTTTTTGTTCATGTATATGA  300

seq1  AATCATGCCACGCTGCGAAAGCAAAGAGCATATGTACATTCCCAAGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGCCACGCTGCGAAAGCAAAGAGCATATGTACATTCCCAAGGAGT  350

seq1  CAACTGAAGGAAAAGGAGTTTAAATAATGGCAGAAACAAAGGCAGTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAAGGAAAAGGAGTTTAAATAATGGCAGAAACAAAGGCAGTAAGA  400

seq1  TATAAGACAAAATTTCTTGAGAAGAAACCAATCATGATTTAAAAAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACAAAATTTCTTGAGAAGAAACCAATCATGATTTAAAAAAAAAT  450

seq1  GTAATGGAAATTATTAGGGAAAATACCACTTCTTATCTTAATATTCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGAAATTATTAGGGAAAATACCACTTCTTATCTTAATATTCTGGA  500

seq1  GGTCTGTCCTGCCATTTTGTGACTCCATTTCATTTCTCTCATATTTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTCCTGCCATTTTGTGACTCCATTTCATTTCTCTCATATTTCCAA  550

seq1  TCACACTTAAAATCTTTAAAATTTGCATCTATAGGGAATTAATGATATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTAAAATCTTTAAAATTTGCATCTATAGGGAATTAATGATATCT  600

seq1  TCAGAAAAAGAAAAGAAAAAGAAAACTGATGCATTTCCACAATGCATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAAGAAAAGAAAAAGAAAACTGATGCATTTCCACAATGCATTAG  650

seq1  CGTTCTAAGGAAACCAGCTGAACACTCTAGGGCTGGCCATTAGCTTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTAAGGAAACCAGCTGAACACTCTAGGGCTGGCCATTAGCTTGGAC  700

seq1  GTCCTTTGAGTGACATGGAGTTTCAAGTTCACTACTGCTCAGATAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGAGTGACATGGAGTTTCAAGTTCACTACTGCTCAGATAAGGAG  750

seq1  GGGGCACAAGCAGAGCAGATTCTTCACAAAGGAAGTCCAAGTTCATTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACAAGCAGAGCAGATTCTTCACAAAGGAAGTCCAAGTTCATTTTG  800

seq1  CTGACTTTAAACTCAGCAATACAAACCAACCCAGAAGTAGATATGAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTAAACTCAGCAATACAAACCAACCCAGAAGTAGATATGAGATG  850

seq1  TCACCTAAATTATTGCCTGAAATTTTAAAATAAAATAGCAGAGTTTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAAATTATTGCCTGAAATTTTAAAATAAAATAGCAGAGTTTTTTG  900

seq1  AGGACATAAAGGACATCAAG-CTTCCCTTTGTGCCTTTGGCACACTCAAC  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGACATAAAGGACATCAAGCCTTCCCTTTGTGCCTTTGGCACACTCAAC  950

seq1  ACAACAAC-TTCACTTTACAAACCTGCTTCCATTATGTATACGAACCGAC  998
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACTTTCACTTTACAAACCTGCTTCCATTATGTATACGAACCGAC  1000

seq1  TTTCTTCCCTGTTGATAAATGCTGGCCATTTCCCCCCATGTTTTTAG-AT  1047
      |||| |||||||||||||||||||||||||  ||||||||||||||| ||
seq2  TTTC-TCCCTGTTGATAAATGCTGGCCATT--CCCCCATGTTTTTAGAAT  1047

seq1  ACATG-AACTGGGAAAAATAAATACTGTTAGAACATAAGATA-TCTTTGG  1095
      ||||| ||||||||||||| |||||||||||||||||  ||| |||||||
seq2  ACATGAAACTGGGAAAAAT-AATACTGTTAGAACATAGAATATTCTTTGG  1096

seq1  CAGGTTACTGAG-TAGCT-ATATTTTCTA-CCATGGCAAGGTACTTTTTC  1142
      |  | ||||||| ||||| |||||||||| |||| |||  |||| |||||
seq2  CCAG-TACTGAGTTAGCTAATATTTTCTATCCAT-GCA--GTAC-TTTTC  1141

seq1  ACCAAGAAACTGAGGAAGATTAAAAGTGAG  1172
      ||||   |||||| ||||| | ||||||||
seq2  ACCA--GAACTGAAGAAGAATTAAAGTGAG  1169