BAC Information

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BAC

Clone NameB6Ng01-280P04
Chromosome3 (Build37)
Map Location 140,111,487 - 140,257,502
singlet/doubletdoublet
Overlap genenone
Upstream geneB930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2, Unc5c, LOC100039923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280P04.bB6Ng01-280P04.g
ACCGA080551GA080552
length1,128894
definitionB6Ng01-280P04.b B6Ng01-280P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,256,365 - 140,257,502)(140,111,487 - 140,112,380)
sequence
gaattcaacacaatacaaggacagagattaaaaggaaaatattggaaaaa
aattcttggcttactttgaatagttttacactattttctcatatttacag
tttttaattagaaaaatagattttattagaaagcaaacaatctcaagaaa
ggaatttattgaaactgtgttaaggtaaagatagagagatactagaaatt
gatccaaaagcctggtactgtttttattatttaaggaactagaataaatg
gacttaaaatgtaaaatgatagttttatataaggtagtagaattatagag
ttaatttcttcatagtctccaaagtgcactgtataagtcagggttctcta
gtgttggagaatttacagaatttctctatgtattaggggaaattatttga
atgacttagaggctgcagtctaatttatccaacaatttgcaactgtgaat
gggaagtccaagaatctagaaattgctcagtcccatgagggtagttgttt
cagctgatttcagtataaactggaattctgaggaagtaggtaccaaaaaa
cgtgctggccaacaactgcaaatgaagaagattaagacttccttcttcca
ttgtccttgtaataagcctccagcagaaggtatggcccaaattaaaggca
tatactaccatccctggacctaagatcttctttacttggaacttgcactg
tccaagcctggccttgaactcagaaatcggcttgagtctgtgttttggaa
taaaagatatgcattaacttgcctgggccaaagattttcatgactactat
ggttccatatctggatcaaaaacctgtgacttccagactcaagatctgga
tgacagttgtcccctccatttcaggattgtaattcattccagatatagtc
aagctgaaaattgagaataaccgacagatacatacctaaagtttcaccaa
gactctgatttttcagaaaaaaaaaaaattcagtgagctccaggcatgta
aaggatttggaagatagatatgaatatatttttggattttcaaatctgag
tatagatattaattgaagtaaagatgtatgatattgtatgtgattattag
atacaactaccataatctcgttaactac

gaattcaccaaaatatttgctttacaagaacacatacaaatgcaggtcat
tagaggagatagacagtattaacaagaaccattatcaaattaagcatcaa
ataacttagaataggtgaagcctattaatcatcatgtccaggaagtacca
aagcaaagggaaaattggaggaattagctctacctataccaacaaagaaa
aaagccaaacagctaataaaacacaggctgaaccacaaaaatatagagaa
aaaaagcatactatgactttctacaaggaaccaccttccagttaatgcct
ttctttgggatctagactacatggatactggaattgtcaattttcatctt
ctgggggctgtgatgttaaggttgacagtatttttgaaaagccaactgta
aaactgtacccaggaatggtgatacctttatattcaggggtgtcataaac
gacaatgcccattgcacatttagcatgccaggaaactgtgtctttgtgca
cagttgatattatgtagattttttttgctcactaattccaacagtcttga
aaccctggcttgcttggtcactgtgaaagcttttctaaattatgattgtt
tttcccacagtactgaacttcaggtcaaagaaggattcaaagctatcatg
atatgaagtaatactgtaattataacataggataatattataatatggag
taaagtccttcacatattggattttaatagaccctttgttttcattgact
gggacacagctgttgtatagggtagtgtcatataggtggccttttctttc
tgtttgtttgcttattagtaacacatgatttcaccctgttccccattgag
ccacttaccaaaacaataagtatttgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140256365_140257502
seq2: B6Ng01-280P04.b_44_1171 (reverse)

seq1  GTAGTTATAACGAGATTTATGTGTAGTTGTATCTTTATTAAATCACATAC  50
      |||||  |||||||| ||||| |||||||||||  || | ||||||||||
seq2  GTAGT--TAACGAGA-TTATG-GTAGTTGTATC--TAAT-AATCACATAC  43

seq1  -ATATCTATACATCTTTTACTTTTCATTTTAATATCTATTACTCAGATTT  99
       ||||| ||||||| |||||  ||||  |||||||||| |||||||| ||
seq2  AATATC-ATACATC-TTTAC--TTCA-ATTAATATCTA-TACTCAGA-TT  86

seq1  TAAAAATCCAAAAATATATTCATATCTATCTT-CAAATCCTTTACATGCC  148
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGAAAATCCAAAAATATATTCATATCTATCTTCCAAATCCTTTACATGCC  136

seq1  TGGAGCTCACTGAA--TTTTTTTTTTCTGAAAAATCAGAGTCTTGGTGAA  196
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCACTGAATTTTTTTTTTTTCTGAAAAATCAGAGTCTTGGTGAA  186

seq1  ACTTTAGGTATGTATCTGTCGGTTATTCTCAATTTTCAGCTTGACTATAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGTATGTATCTGTCGGTTATTCTCAATTTTCAGCTTGACTATAT  236

seq1  CTGGAATGAATTACAATCCTGAAATGGAGGGGACAACTGTCATCCAGATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGAATTACAATCCTGAAATGGAGGGGACAACTGTCATCCAGATC  286

seq1  TTGAGTCTGGAAGTCACAGGTTTTTGATCCAGATATGGAACCATAGTAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTGGAAGTCACAGGTTTTTGATCCAGATATGGAACCATAGTAGT  336

seq1  CATGAAAATCTTTGGCCCAGGCAAGTTAATGCATATCTTTTATTCCAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATCTTTGGCCCAGGCAAGTTAATGCATATCTTTTATTCCAAAA  386

seq1  CACAGACTCAAGCCGATTTCTGAGTTCAAGGCCAGGCTTGGACAGTGCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTCAAGCCGATTTCTGAGTTCAAGGCCAGGCTTGGACAGTGCAA  436

seq1  GTTCCAAGTAAAGAAGATCTTAGGTCCAGGGATGGTAGTATATGCCTTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAGTAAAGAAGATCTTAGGTCCAGGGATGGTAGTATATGCCTTTA  486

seq1  ATTTGGGCCATACCTTCTGCTGGAGGCTTATTACAAGGACAATGGAAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGCCATACCTTCTGCTGGAGGCTTATTACAAGGACAATGGAAGAA  536

seq1  GGAAGTCTTAATCTTCTTCATTTGCAGTTGTTGGCCAGCACGTTTTTTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTTAATCTTCTTCATTTGCAGTTGTTGGCCAGCACGTTTTTTGG  586

seq1  TACCTACTTCCTCAGAATTCCAGTTTATACTGAAATCAGCTGAAACAACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACTTCCTCAGAATTCCAGTTTATACTGAAATCAGCTGAAACAACT  636

seq1  ACCCTCATGGGACTGAGCAATTTCTAGATTCTTGGACTTCCCATTCACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCATGGGACTGAGCAATTTCTAGATTCTTGGACTTCCCATTCACAG  686

seq1  TTGCAAATTGTTGGATAAATTAGACTGCAGCCTCTAAGTCATTCAAATAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAATTGTTGGATAAATTAGACTGCAGCCTCTAAGTCATTCAAATAA  736

seq1  TTTCCCCTAATACATAGAGAAATTCTGTAAATTCTCCAACACTAGAGAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTAATACATAGAGAAATTCTGTAAATTCTCCAACACTAGAGAAC  786

seq1  CCTGACTTATACAGTGCACTTTGGAGACTATGAAGAAATTAACTCTATAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTATACAGTGCACTTTGGAGACTATGAAGAAATTAACTCTATAA  836

seq1  TTCTACTACCTTATATAAAACTATCATTTTACATTTTAAGTCCATTTATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTACCTTATATAAAACTATCATTTTACATTTTAAGTCCATTTATT  886

seq1  CTAGTTCCTTAAATAATAAAAACAGTACCAGGCTTTTGGATCAATTTCTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCCTTAAATAATAAAAACAGTACCAGGCTTTTGGATCAATTTCTA  936

seq1  GTATCTCTCTATCTTTACCTTAACACAGTTTCAATAAATTCCTTTCTTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTCTATCTTTACCTTAACACAGTTTCAATAAATTCCTTTCTTGA  986

seq1  GATTGTTTGCTTTCTAATAAAATCTATTTTTCTAATTAAAAACTGTAAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTGCTTTCTAATAAAATCTATTTTTCTAATTAAAAACTGTAAAT  1036

seq1  ATGAGAAAATAGTGTAAAACTATTCAAAGTAAGCCAAGAATTTTTTTCCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAATAGTGTAAAACTATTCAAAGTAAGCCAAGAATTTTTTTCCA  1086

seq1  ATATTTTCCTTTTAATCTCTGTCCTTGTATTGTGTTGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCCTTTTAATCTCTGTCCTTGTATTGTGTTGAATTC  1128


seq1: chr3_140111487_140112380
seq2: B6Ng01-280P04.g_65_958

seq1  GAATTCACCAAAATATTTGCTTTACAAGAACACATACAAATGCAGGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAAATATTTGCTTTACAAGAACACATACAAATGCAGGTCAT  50

seq1  TAGAGGAGATAGACAGTATTAACAAGAACCATTATCAAATTAAGCATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGATAGACAGTATTAACAAGAACCATTATCAAATTAAGCATCAA  100

seq1  ATAACTTAGAATAGGTGAAGCCTATTAATCATCATGTCCAGGAAGTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTAGAATAGGTGAAGCCTATTAATCATCATGTCCAGGAAGTACCA  150

seq1  AAGCAAAGGGAAAATTGGAGGAATTAGCTCTACCTATACCAACAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGGGAAAATTGGAGGAATTAGCTCTACCTATACCAACAAAGAAA  200

seq1  AAAGCCAAACAGCTAATAAAACACAGGCTGAACCACAAAAATATAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAAACAGCTAATAAAACACAGGCTGAACCACAAAAATATAGAGAA  250

seq1  AAAAAGCATACTATGACTTTCTACAAGGAACCACCTTCCAGTTAATGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCATACTATGACTTTCTACAAGGAACCACCTTCCAGTTAATGCCT  300

seq1  TTCTTTGGGATCTAGACTACATGGATACTGGAATTGTCAATTTTCATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGGATCTAGACTACATGGATACTGGAATTGTCAATTTTCATCTT  350

seq1  CTGGGGGCTGTGATGTTAAGGTTGACAGTATTTTTGAAAAGCCAACTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCTGTGATGTTAAGGTTGACAGTATTTTTGAAAAGCCAACTGTA  400

seq1  AAACTGTACCCAGGAATGGTGATACCTTTATATTCAGGGGTGTCATAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTACCCAGGAATGGTGATACCTTTATATTCAGGGGTGTCATAAAC  450

seq1  GACAATGCCCATTGCACATTTAGCATGCCAGGAAACTGTGTCTTTGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGCCCATTGCACATTTAGCATGCCAGGAAACTGTGTCTTTGTGCA  500

seq1  CAGTTGATATTATGTAGATTTTTTTTGCTCACTAATTCCAACAGTCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGATATTATGTAGATTTTTTTTGCTCACTAATTCCAACAGTCTTGA  550

seq1  AACCCTGGCTTGCTTGGTCACTGTGAAAGCTTTTCTAAATTATGATTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGCTTGCTTGGTCACTGTGAAAGCTTTTCTAAATTATGATTGTT  600

seq1  TTTCCCACAGTACTGAACTTCAGGTCAAAGAAGGATTCAAAGCTATCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACAGTACTGAACTTCAGGTCAAAGAAGGATTCAAAGCTATCATG  650

seq1  ATATGAAGTAATACTGTAATTATAACATAGGATAATATTATAATATGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGTAATACTGTAATTATAACATAGGATAATATTATAATATGGAG  700

seq1  TAAAGTCCTTCACATATTGGATTTTAATAGACCCTTTGTTTTCATTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCCTTCACATATTGGATTTTAATAGACCCTTTGTTTTCATTGACT  750

seq1  GGGACACAGCTGTTGTATAGGGTAGTGTCATATAGGTGGCCTTTTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACAGCTGTTGTATAGGGTAGTGTCATATAGGTGGCCTTTTCTTTC  800

seq1  TGTTTGTTTGCTTATTAGTAACACATGATTTCACCCTGTTCCCCATTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGCTTATTAGTAACACATGATTTCACCCTGTTCCCCATTGAG  850

seq1  CCACTTACCAAAACAATAAGTATTTGTGTGTGTGTGTGTGTGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTACCAAAACAATAAGTATTTGTGTGTGTGTGTGTGTGTG  894


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