BAC Information

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BAC

Clone NameB6Ng01-281A05
Chromosome3 (Build37)
Map Location 124,290,490 - 124,475,160
singlet/doubletdoublet
Overlap geneLOC668817
Upstream geneNdst3, LOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik
Downstream geneLOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281A05.bB6Ng01-281A05.g
ACCGA080601GA080602
length8921,127
definitionB6Ng01-281A05.b B6Ng01-281A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,290,490 - 124,291,381)(124,474,018 - 124,475,160)
sequence
gaattctccagaattctcgtaaaataaagattcctcactggagactgagg
aaaggaatgtagataaggtggtggtgtctctttggatccaataactcaaa
ggattttgcatattcatttatatgtgtagctataaaatcagagaatactg
tttcaaggctgccatcttctggatgatgcataccattacaacgcagttca
catcttggtaatctcttcacaaaaccactgtgacaattattttctacttg
atctaagcttcaggctcctgaaaatataattaaatatttaacagacccgt
gaagaagcaatagtaaaaggaaagctaattgtgtgattaagcataataaa
aactactaagtaattagattaagtgtcattgtgtgcaaatttgcactttg
tattcatgaagaatgtttccttttttttctctttttctaataaaaaactt
gtatttacttagaagcattcagaatgtcaacgaaacagctgcaaattttt
tttttttttgcaattacagagtggtattcatttaacagaacaacaattat
cttcgtataagctgcatcagagacaactgaagatgaaaaaaataaaacca
aaagaaaaaaaaaaccaactgtccctgtatataactaatttgtgctgtac
accaacaagaacctgctttaaatttccatgccaatttacaacccctagac
tgtaccaggcaaggttagtggctattgaaaataccaccaggacagggcta
tctaaagacacatttggtagtgtgttaactatacaaaaaaaaaaaaaaaa
acacactgtacagtttaaaaacaaatcttacacagccttacttttcaatt
tttttctttaaaagaagtgagttgtgtgtgtggggggggggg

gaattccagagcatcctctccagtgtaaaaattcctgaagaatgggaaga
ttattaccagcctctcagggtgaactacttatgctccatttagtagcctt
atgtttgctttaccaagtaacaccccaaaatcagcagctcacaagttaaa
tatgaatatattcagcaccctttttgaatatagtaaatatatttaacata
taattataaaaaatgaatgtgaattattttattttaaatgctttaacaca
atctgaaaaattacttgctagatatgctttaaaagtaactcagttaaaca
taacttaaatatatgcattagaaaaatattttgagcagaatcatcaaatt
ccacataaaatatgatcatccagccatgctcacataatttaagataaaaa
cggccatataatactacatttcatgtggtgctaatttaaaaaccaactct
cattcacaaaatatgtctattatttatacagtgctatttatataagttgt
tttatttatataatatatatgatttatgtaaaaatagaagttttgtctca
aaacaagcatcaattagtaaggtatagctatttttcttctggcaatgaga
acattatttacattgtctaaatatatttacaaacaagatgctattttaca
gtcttgctggatgtttgtgttgcagacatatacacacacacacacactca
cacacacaattacaatgaaaacgtgttctaagttgttattttgtcataaa
gttatttgcgataaattttgcatgatatttgatcaagaattgaaaaaaga
ggctgcagtgtttgcttaggggctaaaagctcactatgatcttttagaag
gtatgtttagttcctgccaaccatgctggttagctctcaactgtcaataa
ccctccactccagaaacctttcaagcttcggcagacaccagtaccaggtg
cacatccccataacagaaatacatttaactaattgaaaacaaatctttaa
agcacagagtaaaatacagggaatggagtaaaaactttacatcatatgaa
attgtatgattaattaaacataatatggaagtgatgcaatggttgcatga
aagtggtcttatagacttttggaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124290490_124291381
seq2: B6Ng01-281A05.b_48_939

seq1  GAATTCTCCAGAATTCTCGTAAAATAAAGATTCCTCACTGGAGACTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGAATTCTCGTAAAATAAAGATTCCTCACTGGAGACTGAGG  50

seq1  AAAGGAATGTAGATAAGGTGGTGGTGTCTCTTTGGATCCAATAACTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATGTAGATAAGGTGGTGGTGTCTCTTTGGATCCAATAACTCAAA  100

seq1  GGATTTTGCATATTCATTTATATGTGTAGCTATAAAATCAGAGAATACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGCATATTCATTTATATGTGTAGCTATAAAATCAGAGAATACTG  150

seq1  TTTCAAGGCTGCCATCTTCTGGATGATGCATACCATTACAACGCAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGCTGCCATCTTCTGGATGATGCATACCATTACAACGCAGTTCA  200

seq1  CATCTTGGTAATCTCTTCACAAAACCACTGTGACAATTATTTTCTACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGGTAATCTCTTCACAAAACCACTGTGACAATTATTTTCTACTTG  250

seq1  ATCTAAGCTTCAGGCTCCTGAAAATATAATTAAATATTTAACAGACCCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGCTTCAGGCTCCTGAAAATATAATTAAATATTTAACAGACCCGT  300

seq1  GAAGAAGCAATAGTAAAAGGAAAGCTAATTGTGTGATTAAGCATAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCAATAGTAAAAGGAAAGCTAATTGTGTGATTAAGCATAATAAA  350

seq1  AACTACTAAGTAATTAGATTAAGTGTCATTGTGTGCAAATTTGCACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTAAGTAATTAGATTAAGTGTCATTGTGTGCAAATTTGCACTTTG  400

seq1  TATTCATGAAGAATGTTTCCTTTTTTTTCTCTTTTTCTAATAAAAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGAAGAATGTTTCCTTTTTTTTCTCTTTTTCTAATAAAAAACTT  450

seq1  GTATTTACTTAGAAGCATTCAGAATGTCAACGAAACAGCTGCAAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTACTTAGAAGCATTCAGAATGTCAACGAAACAGCTGCAAATTTTT  500

seq1  TTTTTTTTTGCAATTACAGAGTGGTATTCATTTAACAGAACAACAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGCAATTACAGAGTGGTATTCATTTAACAGAACAACAATTAT  550

seq1  CTTCGTATAAGCTGCATCAGAGACAACTGAAGATGAAAAAAATAAAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTATAAGCTGCATCAGAGACAACTGAAGATGAAAAAAATAAAACCA  600

seq1  AAAGAAAAAAAAAACCAACTGTCCCTGTATATAACTAATTTGTGCTGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAAAAACCAACTGTCCCTGTATATAACTAATTTGTGCTGTAC  650

seq1  ACCAACAAGAACCTGCTTTAAATTTCCATGCCAATTTACAACCCCTAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAAGAACCTGCTTTAAATTTCCATGCCAATTTACAACCCCTAGAC  700

seq1  TGTACCAGGCAAGGTTAGTGGCTATTGAAAATACCACCAGGACAGGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAGGCAAGGTTAGTGGCTATTGAAAATACCACCAGGACAGGGCTA  750

seq1  TCTAAAGACACATTTGGTAGTGTGTTAACTATACAAAAAAAAAAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGACACATTTGGTAGTGTGTTAACTATACAAAAAAAAAAAAAAAA  800

seq1  ACACACTGTACAGTTTAAAAACAAATCTTACACAGCCTTACATTTCAATT  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACACACTGTACAGTTTAAAAACAAATCTTACACAGCCTTACTTTTCAATT  850

seq1  TTTTTCTTTAAAAGAAGTGAGTTGTGTGTGTGGGGGGGGGGG  892
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTAAAAGAAGTGAGTTGTGTGTGTGGGGGGGGGGG  892


seq1: chr3_124474018_124475160
seq2: B6Ng01-281A05.g_67_1193 (reverse)

seq1  AACTTCTCACAAAAAGTCTTAATTAAAGACCACTTTTATATGCACACACT  50
      |||||    | ||||||||  ||  |||||||||||   |||||  || |
seq2  AACTT----CCAAAAGTCT--AT--AAGACCACTTT--CATGCAACCATT  40

seq1  GCATCACTATCAATATTTATGTTTAATT-ATCATACAATTTCATATTAAT  99
      |||||||| || ||| |||||||||||| |||||||||||||||| | ||
seq2  GCATCACT-TCCATA-TTATGTTTAATTAATCATACAATTTCATA-TGAT  87

seq1  GTAAAGTTTTTACTCCAATCCCTGTATTTTACTTCTGTGCTTTTAAAGAT  149
      ||||||||||||||||| |||||||||||||| ||||||| |||||||||
seq2  GTAAAGTTTTTACTCCATTCCCTGTATTTTAC-TCTGTGC-TTTAAAGAT  135

seq1  TTGTTTTCAATTAAGTTTAAATGTATTTCTGTTATGGGGATGTGCACCTG  199
      |||||||||||||   ||||||||||||||||||||||||||||||||| 
seq2  TTGTTTTCAATTA--GTTAAATGTATTTCTGTTATGGGGATGTGCACCT-  182

seq1  GGTACTGGTGTCTGCCGAAGCTTGAAAGGTTTCTGGAGTGGA-GGTTATT  248
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGTACTGGTGTCTGCCGAAGCTTGAAAGGTTTCTGGAGTGGAGGGTTATT  232

seq1  GACAGTTGAGAGCTAACCAGCATGGTTGGCAGGAACTAAACATACCTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTGAGAGCTAACCAGCATGGTTGGCAGGAACTAAACATACCTTCT  282

seq1  AAAAGATCATAGTGAGCTTTTAGCCCCTAAGCAAACACTGCAGCCTCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCATAGTGAGCTTTTAGCCCCTAAGCAAACACTGCAGCCTCTTT  332

seq1  TTTCAATTCTTGATCAAATATCATGCAAAATTTATCGCAAATAACTTTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTCTTGATCAAATATCATGCAAAATTTATCGCAAATAACTTTAT  382

seq1  GACAAAATAACAACTTAGAACACGTTTTCATTGTAATTGTGTGTGTGAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATAACAACTTAGAACACGTTTTCATTGTAATTGTGTGTGTGAGT  432

seq1  GTGTGTGTGTGTGTATATGTCTGCAACACAAACATCCAGCAAGACTGTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTATATGTCTGCAACACAAACATCCAGCAAGACTGTAA  482

seq1  AATAGCATCTTGTTTGTAAATATATTTAGACAATGTAAATAATGTTCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATCTTGTTTGTAAATATATTTAGACAATGTAAATAATGTTCTCA  532

seq1  TTGCCAGAAGAAAAATAGCTATACCTTACTAATTGATGCTTGTTTTGAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGAAGAAAAATAGCTATACCTTACTAATTGATGCTTGTTTTGAGA  582

seq1  CAAAACTTCTATTTTTACATAAATCATATATATTATATAAATAAAACAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTCTATTTTTACATAAATCATATATATTATATAAATAAAACAAC  632

seq1  TTATATAAATAGCACTGTATAAATAATAGACATATTTTGTGAATGAGAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAAATAGCACTGTATAAATAATAGACATATTTTGTGAATGAGAGT  682

seq1  TGGTTTTTAAATTAGCACCACATGAAATGTAGTATTATATGGCCGTTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTAAATTAGCACCACATGAAATGTAGTATTATATGGCCGTTTTT  732

seq1  ATCTTAAATTATGTGAGCATGGCTGGATGATCATATTTTATGTGGAATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAATTATGTGAGCATGGCTGGATGATCATATTTTATGTGGAATTT  782

seq1  GATGATTCTGCTCAAAATATTTTTCTAATGCATATATTTAAGTTATGTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTCTGCTCAAAATATTTTTCTAATGCATATATTTAAGTTATGTTT  832

seq1  AACTGAGTTACTTTTAAAGCATATCTAGCAAGTAATTTTTCAGATTGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTTACTTTTAAAGCATATCTAGCAAGTAATTTTTCAGATTGTGT  882

seq1  TAAAGCATTTAAAATAAAATAATTCACATTCATTTTTTATAATTATATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATTTAAAATAAAATAATTCACATTCATTTTTTATAATTATATGT  932

seq1  TAAATATATTTACTATATTCAAAAAGGGTGCTGAATATATTCATATTTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATTTACTATATTCAAAAAGGGTGCTGAATATATTCATATTTAA  982

seq1  CTTGTGAGCTGCTGATTTTGGGGTGTTACTTGGTAAAGCAAACATAAGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGCTGCTGATTTTGGGGTGTTACTTGGTAAAGCAAACATAAGGC  1032

seq1  TACTAAATGGAGCATAAGTAGTTCACCCTGAGAGGCTGGTAATAATCTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATGGAGCATAAGTAGTTCACCCTGAGAGGCTGGTAATAATCTTC  1082

seq1  CCATTCTTCAGGAATTTTTACACTGGAGAGGATGCTCTGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTCAGGAATTTTTACACTGGAGAGGATGCTCTGGAATTC  1127


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