BAC Information

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BAC

Clone NameB6Ng01-281A19
Chromosome3 (Build37)
Map Location 115,951,510 - 116,100,256
singlet/doubletdoublet
Overlap geneGpr88, Cdc14a
Upstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
Downstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281A19.bB6Ng01-281A19.g
ACCGA080625GA080626
length1,0911,177
definitionB6Ng01-281A19.b B6Ng01-281A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,099,177 - 116,100,256)(115,951,510 - 115,952,673)
sequence
gaattctttgacaagggacttcagtgtttttcaggaggcaggttcattaa
atgcatggtctttcaggatcatagcatttcacgggggtggggaggggcgg
catcatatttgtgtgtaacatttttccagaatttaccaatagatatagtc
tagtagatttcccagactctactccactgagtcagaaactctgggcaggc
ccagtggccagccttcaagctctctaggaccctctgcaccagtctaatgc
aagcatgcaatggaacactataatataataataaaatacaatgcagttta
ggtttaaatttatttttgtttttttatttctgaaaaaatttcatactgct
gaccttttcatcccaggacttatttaataaattctgagccacaagacttg
ttaatggccttgtgtttaaggtttactccaattatcagtgtcagtgagag
agatctggattcctcctgcctcccacacttggctgtgtaagactttacag
caggcctttcctggttcctggcttatgttctggtagaacgcagtgtgctt
attatatttcagccttgcttgggacctcagctttggaaagcactctgcac
tgttaaactggacccctctggcgctggctgctcctgttgttttgggaaat
gagatatagtaattggcttacagatatttgctgctgctgctgttagggct
ggctgtttgtctacttagcttgagagggttcaggaggtttggaagacggg
aatctaaggtctatatagatggctagcgagtgttctctgtcatggtcata
tgcagtagagttggctagagggcttagtattctttcagagacatcttttt
ttgtatttaagactggtttgactttgacccatgtttccattttgcttcgc
tttgtactgtgtttttgtgatctctgagcatctcataataaaggaaatga
tctgtaagaatggggtttagcttactgaaatccagatgcatgacgacggc
tttgcaatggttctccctggaagagccaggacttacctgggatgactcca
taagatgggcccatgagtgaataagtagggccatgtcctgt
gaattcaaacaagaccaactccctattggcaagtagatcttttcaacaac
tttccttatcagtgattcaaagaaagtatctttgcccttcctcttctgca
tgacatcctctgctgggtccctctgaaaaggaaaatatcccagtgtggaa
atcttttctctgtgattctgagacaaagagaaatttacctgacctgaaat
accacctgcaaatgtccctgtaccaagcagaattcttctttgttaatgct
cttcattgtggaaggaagaaaatgtggggttagggcctattctgtcctgg
aatttagcccttgaaatgcatttagaagggaggcagatgttatacagctt
aataggcatgcacggaaagaaaaagaagcacaaaagtaaattaggacagc
ccaggatagcagttaggatatatatatatatataaattcctgagtggata
atatgtggtttcatttaaataagaacacaatctccattaatttaatttgt
caaagcagtaactccaacacttgcaggcagcgcctaggcaggcattttta
gatgcttcagtgctactttaaaactaaaaggagacagtcctgtggagtta
attactagtaaattaatcaaaagtaggcctcccatgtggcacagtgccag
cctgggagtgctagccagaaacatggcaaggtatcagagtctcattcaca
aatctctatatatgtgtggtgcattattgggacagagagggaacatgaga
aaccaggacaatggttaactagaagagcttgttgacagagctttagaaca
tcgccatctctctgttatctttatgacccattcctccatgtttacagaaa
gaaaacatagctattttcttttcccagaccaatgtaaggagcttatgtaa
ctatatgaagtaaaaagcattttagaaactgaaaaacaaacttacagcca
gcaaaaaaggagtcgctctgtatctgtagtgttttggaacagtgtcttcc
gggtaacaaggatctttaggacagaagacagagagaggaatactcaggaa
aggaagaagaaatagagcccaggagaagcatatggcaactttaaattaat
attcctgaaatccaggaaaactggaaaacgaagatctcctagagaaaaat
gaacatgcaccacagtttgggtttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116099177_116100256
seq2: B6Ng01-281A19.b_47_1137 (reverse)

seq1  ACAGGACATGGGCCT-CCTCTTCACTC--TGGCCCATC-TCTGTGGTC-T  45
      ||||||||||| ||| | | |||||||   |||||||| | ||  ||| |
seq2  ACAGGACATGGCCCTACTTATTCACTCATGGGCCCATCTTATGGAGTCAT  50

seq1  CCCAGGT-AGTCCTGGCTCTT-CAGGGAGAACATTTGCAAAGCCGTCGTC  93
      ||||||| ||||||||||||| ||||||||||  ||||||||||||||||
seq2  CCCAGGTAAGTCCTGGCTCTTCCAGGGAGAACCATTGCAAAGCCGTCGTC  100

seq1  ATGCATCTGGATTTCAGTAAGCT-AACCCCATTCTTACAGATCATTT-CT  141
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  ATGCATCTGGATTTCAGTAAGCTAAACCCCATTCTTACAGATCATTTCCT  150

seq1  TTA-TATGAGATGCTCAGAGATCACAAAAAACACAGTACAAAAGCGAAGC  190
      ||| ||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TTATTATGAGATGCTCAGAGATCAC-AAAAACACAGTAC-AAAGCGAAGC  198

seq1  -AAATGGAAACATGGGTC-AAGTCAAACCAGTCTTAAATAC-AAAAAAGA  237
       ||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  AAAATGGAAACATGGGTCAAAGTCAAACCAGTCTTAAATACAAAAAAAGA  248

seq1  TGTCTCTGAAAGAATACTAAGCCCTCTAGCCAACTCTACTGCATATGACC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGAAAGAATACTAAGCCCTCTAGCCAACTCTACTGCATATGACC  298

seq1  ATGACAGAGAACACTCGCTAGCCATCTATATAGACCTTAGATTCCCGTCT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGAGAACACTCGCTAGCCATCTATATAGACCTTAGATTCCCGTCT  348

seq1  TCCAAACCTCCTGAACCCTCTCAAGCTAAGTAGACAAACAGCCAGCCCTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCTCCTGAACCCTCTCAAGCTAAGTAGACAAACAGCCAGCCCTA  398

seq1  ACAGCAGCAGCAGCAAATATCTGTAAGCCAATTACTATATCTCATTTCCC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCAGCAGCAAATATCTGTAAGCCAATTACTATATCTCATTTCCC  448

seq1  AAAACAACAGGAGCAGCCAGCGCCAGAGGGGTCCAGTTTAACAGTGCAGA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAGGAGCAGCCAGCGCCAGAGGGGTCCAGTTTAACAGTGCAGA  498

seq1  GTGCTTTCCAAAGCTGAGGTCCCAAGCAAGGCTGAAATATAATAAGCACA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTCCAAAGCTGAGGTCCCAAGCAAGGCTGAAATATAATAAGCACA  548

seq1  CTGCGTTCTACCAGAACATAAGCCAGGAACCAGGAAAGGCCTGCTGTAAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTTCTACCAGAACATAAGCCAGGAACCAGGAAAGGCCTGCTGTAAA  598

seq1  GTCTTACACAGCCAAGTGTGGGAGGCAGGAGGAATCCAGATCTCTCTCAC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACACAGCCAAGTGTGGGAGGCAGGAGGAATCCAGATCTCTCTCAC  648

seq1  TGACACTGATAATTGGAGTAAACCTTAAACACAAGGCCATTAACAAGTCT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGATAATTGGAGTAAACCTTAAACACAAGGCCATTAACAAGTCT  698

seq1  TGTGGCTCAGAATTTATTAAATAAGTCCTGGGATGAAAAGGTCAGCAGTA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCAGAATTTATTAAATAAGTCCTGGGATGAAAAGGTCAGCAGTA  748

seq1  TGAAATTTTTTCAGAAATAAAAAAACAAAAATAAATTTAAACCTAAACTG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTTTTCAGAAATAAAAAAACAAAAATAAATTTAAACCTAAACTG  798

seq1  CATTGTATTTTATTATTATATTATAGTGTTCCATTGCATGCTTGCATTAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATTTTATTATTATATTATAGTGTTCCATTGCATGCTTGCATTAG  848

seq1  ACTGGTGCAGAGGGTCCTAGAGAGCTTGAAGGCTGGCCACTGGGCCTGCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGCAGAGGGTCCTAGAGAGCTTGAAGGCTGGCCACTGGGCCTGCC  898

seq1  CAGAGTTTCTGACTCAGTGGAGTAGAGTCTGGGAAATCTACTAGACTATA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCTGACTCAGTGGAGTAGAGTCTGGGAAATCTACTAGACTATA  948

seq1  TCTATTGGTAAATTCTGGAAAAATGTTACACACAAATATGATGCCGCCCC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGGTAAATTCTGGAAAAATGTTACACACAAATATGATGCCGCCCC  998

seq1  TCCCCACCCCCGTGAAATGCTATGATCCTGAAAGACCATGCATTTAATGA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCCCGTGAAATGCTATGATCCTGAAAGACCATGCATTTAATGA  1048

seq1  ACCTGCCTCCTGAAAAACACTGAAGTCCCTTGTCAAAGAATTC  1080
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTCCTGAAAAACACTGAAGTCCCTTGTCAAAGAATTC  1091

seq1: chr3_115951510_115952673
seq2: B6Ng01-281A19.g_69_1245

seq1  GAATTCAAACAAGACCAACTCCCTATTGGCAAGTAGATCTTTTCAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAAGACCAACTCCCTATTGGCAAGTAGATCTTTTCAACAAC  50

seq1  TTTCCTTATCAGTGATTCAAAGAAAGTATCTTTGCCCTTCCTCTTCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTATCAGTGATTCAAAGAAAGTATCTTTGCCCTTCCTCTTCTGCA  100

seq1  TGACATCCTCTGCTGGGTCCCTCTGAAAAGGAAAATATCCCAGTGTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCTCTGCTGGGTCCCTCTGAAAAGGAAAATATCCCAGTGTGGAA  150

seq1  ATCTTTTCTCTGTGATTCTGAGACAAAGAGAAATTTACCTGACCTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCTCTGTGATTCTGAGACAAAGAGAAATTTACCTGACCTGAAAT  200

seq1  ACCACCTGCAAATGTCCCTGTACCAAGCAGAATTCTTCTTTGTTAATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGCAAATGTCCCTGTACCAAGCAGAATTCTTCTTTGTTAATGCT  250

seq1  CTTCATTGTGGAAGGAAGAAAATGTGGGGTTAGGGCCTATTCTGTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTGTGGAAGGAAGAAAATGTGGGGTTAGGGCCTATTCTGTCCTGG  300

seq1  AATTTAGCCCTTGAAATGCATTTAGAAGGGAGGCAGATGTTATACAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGCCCTTGAAATGCATTTAGAAGGGAGGCAGATGTTATACAGCTT  350

seq1  AATAGGCATGCACGGAAAGAAAAAGAAGCACAAAAGTAAATTAGGACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCATGCACGGAAAGAAAAAGAAGCACAAAAGTAAATTAGGACAGC  400

seq1  CCAGGATAGCAGTTAGGATATATATATATATATAAATTCCTGAGTGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATAGCAGTTAGGATATATATATATATATAAATTCCTGAGTGGATA  450

seq1  ATATGTGGTTTCATTTAAATAAGAACACAATCTCCATTAATTTAATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGTTTCATTTAAATAAGAACACAATCTCCATTAATTTAATTTGT  500

seq1  CAAAGCAGTAACTCCAACACTTGCAGGCAGCGCCTAGGCAGGCATTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGTAACTCCAACACTTGCAGGCAGCGCCTAGGCAGGCATTTTTA  550

seq1  GATGCTTCAGTGCTACTTTAAAACTAAAAGGAGACAGTCCTGTGGAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTCAGTGCTACTTTAAAACTAAAAGGAGACAGTCCTGTGGAGTTA  600

seq1  ATTACTAGTAAATTAATCAAAAGTAGGCCTCCCATGTGGCACAGTGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAGTAAATTAATCAAAAGTAGGCCTCCCATGTGGCACAGTGCCAG  650

seq1  CCTGGGAGTGCTAGCCAGAAACATGGCAAGGTATCAGAGTCTCATTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGTGCTAGCCAGAAACATGGCAAGGTATCAGAGTCTCATTCACA  700

seq1  AATCTCTATATATGTGTGGTGCATTATTGGGACAGAGAGGGAACATGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTATATATGTGTGGTGCATTATTGGGACAGAGAGGGAACATGAGA  750

seq1  AACCAGGACAATGGTTAACTAGAAGAGCTTGTTGACAGAGCTTTAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGACAATGGTTAACTAGAAGAGCTTGTTGACAGAGCTTTAGAACA  800

seq1  TCGCCATCTCTCTGTTATCTTTATGACCCATTCCTCCATGTTTACAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCATCTCTCTGTTATCTTTATGACCCATTCCTCCATGTTTACAGAAA  850

seq1  GAAAACATAGCTA-TTTCTTTTCCCAGACCAATGTAAGGAGCTTATGTAA  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAAACATAGCTATTTTCTTTTCCCAGACCAATGTAAGGAGCTTATGTAA  900

seq1  CTATATGAAGTAAAAAGCATTTTAGAAACTG-AAAACAAACTTACAGCCA  948
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTATATGAAGTAAAAAGCATTTTAGAAACTGAAAAACAAACTTACAGCCA  950

seq1  GCAAAAAAGGAGTCGCTCTGTATCTGTAGTGTTTTGGAACAGTGTCTT-C  997
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCAAAAAAGGAGTCGCTCTGTATCTGTAGTGTTTTGGAACAGTGTCTTCC  1000

seq1  GGGTA--CAGGATCCTTAAGACAG-AGACAGAGAGAGG-ATACCC----A  1039
      |||||   |||||| ||| ||||| ||||||||||||| |||| |    |
seq2  GGGTAACAAGGATCTTTAGGACAGAAGACAGAGAGAGGAATACTCAGGAA  1050

seq1  AGAAAGAAGAGATAGAG-CCAAGAGAAGCATTATGGAAACTTTAATTAAA  1088
      || ||||||| |||||| ||| |||||||| ||||| |||||||| | ||
seq2  AGGAAGAAGAAATAGAGCCCAGGAGAAGCA-TATGGCAACTTTAAATTAA  1099

seq1  TAT--CTG-AATCCAGG-AAACTGGAAACAGAAGAAATCTTCGTAAGAGA  1134
      |||  ||| |||||||| ||||||||||  |||||  || |    |||||
seq2  TATTCCTGAAATCCAGGAAAACTGGAAAACGAAGATCTCCT----AGAGA  1145

seq1  AAAATGACACATGCA-CACAGTTTGG--TTAAT  1164
      ||||||| ||||||| ||||||||||  |||||
seq2  AAAATGA-ACATGCACCACAGTTTGGGTTTAAT  1177