BAC Information

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BAC

Clone NameB6Ng01-281P04
Chromosome3 (Build37)
Map Location 34,009,025 - 34,009,896
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19
Downstream geneLOC435727, EG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281P04.bB6Ng01-281P04.g
ACCGA081294GA081295
length8731,191
definitionB6Ng01-281P04.b B6Ng01-281P04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcttgaaaaagatgaaaaaaaaatgaagaaaataggtagtgtt
gaaggccaggtaataataggaatgtaattagtgacactagtcgaacactt
cgtgaaaaactactgtcactggggctggagagatggatcaacagctaaga
gtgtgcactgctctaggggctgagcccctcccctggaccccatgggcacc
tgcattcatgtgtgcaaatcacacactgagtaaaataaatatatatattt
taaaaggtcaacattgtaaattttatgttatttatttcttaacaattaaa
aaatccctcaataagcagggcagaaaaaacttcatacatccatgactttt
ttaaaaaaaggcacatctatctctatctatcctttctctttctttctttc
tttctttctttctttctttctttctttctttctttctctctctatttcct
tctttctttctctctctctttcttttttctttctctcccttcctttcttt
ccttctttctatgtatgtacgtatatatgtatgtatgtatggtatctatc
tttcttttgtttttaattttttcttttattggatattttctttatttaca
tttcaattattgtcccttttccaggtctctcctctggaaaccccctccca
tcaccctccccctgcctctatgagggtgctcccctcacccacccacccac
ttctgcccttccccccttggcattcccctacactggaaacatcgaacccc
ttcagaccaagggctgctcctcccactgatgtccaaagccatcctctgcc
acatatgtgatgggtcctccatgtgtactctttggttgctggtccatacc
ctaggagctggggggggggtctg
gaattctttgctaatgacatgcatgtattgggctaccttacatcacatag
ttgatctgcatttgtcaggactccatagagagaaatgcaccaaaaacttc
tggtggtgtgctgcagtttcttgctgactctgcagactcgggctgagata
gacacttgtgctgagacaagacatgtgctgaggcaaggctcacggaggac
acatgatgttcagagagaagataaaaggacttaatgggcagtgatggagg
ctgcgcttggcttgcttatagagctagctgtgcaacaattctgagcctgg
agtctatgctgattttcccttccctgagagaggcacagccaagaactcct
gtgttccttctggtccctcctgctgacttgtctctcgctgtctctgcagg
cagtctcaccgctgttgctaacccaactctgttgaactggactgctggtg
tatccatgaagtacttgctagtggattgagctgttgctgctgctaacctg
tgaacggaactgttgatttccaacaatacagatgggagttgctccaaagg
accattctactggtctacttcctccatattctttctggtgggtggtgggc
taaaaggggaggttaaagcatttaagaaccatggttaaaaaacaggttct
ggaaaaaaattaaagttatacatctgattcagagtttggtccctttgcga
gtttcagtttcttccattaatttttttttctagcttaagacttgttgtta
aagtccagttcctgcctgatacaactctacagaacattttgaaagttaat
gttatacagtctgggcctggccactgtgactgcacctccactaagagtgc
ccaccaccactgggcaatggtatttacttgttaattacattcaatacaag
gcagttgtttcaatccccagctgctgagatgaaacacaagtttccggcag
cttcctatcctacggcatcttccatccttttctacctcagcacgttgggc
tccttccggagggtgtctttgtttaagaaggtaaacccttaaccaagaaa
ataattatttcctaataaatttaatgccccattattcaatctaatccctc
ctacctcctttcccaatggccattcttaataagtcaagcgggagaggaag
tacacagtgttagctctactctgataccctctctttatcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_34009025_34009896
seq2: B6Ng01-281P04.b_46_918

seq1  GAATTCTTCTTGAAAAAGATGAAAAAAAAATGAAGAAAATAGGTAGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTGAAAAAGATGAAAAAAAAATGAAGAAAATAGGTAGTGTT  50

seq1  GAAGGCCAGGTAATAATAGGAATGTAATTAGTGACACTAGTCGAACACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCAGGTAATAATAGGAATGTAATTAGTGACACTAGTCGAACACTT  100

seq1  CGTGAAAAACTACTGTCACTGGGGCTGGAGAGATGGATCAACAGCTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAAAACTACTGTCACTGGGGCTGGAGAGATGGATCAACAGCTAAGA  150

seq1  GTGTGCACTGCTCTAGGGGCTGAGCCCCTCCCCTGGACCCCATGGGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACTGCTCTAGGGGCTGAGCCCCTCCCCTGGACCCCATGGGCACC  200

seq1  TGCATTCATGTGTGCAAATCACACACTGAGTAAAATAAATATATATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCATGTGTGCAAATCACACACTGAGTAAAATAAATATATATATTT  250

seq1  TAAAAGGTCAACATTGTAAATTTTATGTTATTTATTTCTTAACAATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTCAACATTGTAAATTTTATGTTATTTATTTCTTAACAATTAAA  300

seq1  AAATCCCTCAATAAGCAGGGCAGAAAAAACTTCATACATCCATGACTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCTCAATAAGCAGGGCAGAAAAAACTTCATACATCCATGACTTTT  350

seq1  TTAAAAAAAGGCACATCTATCTCTATCTATCCTTTCTCTTTCTTTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAGGCACATCTATCTCTATCTATCCTTTCTCTTTCTTTCTTTC  400

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTATTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTATTTCCT  450

seq1  TCTTTCTTTCTCTCTCTCTTTCTTTTTTCTTTCTCTCCCTTCCTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTCTCTCTCTTTCTTTTTTCTTTCTCTCCCTTCCTTTCTTT  500

seq1  CCTTCTTTCTATGTATGTACGTATATATGTATGTATGTATGGTATCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTCTATGTATGTACGTATATATGTATGTATGTATGGTATCTATC  550

seq1  TTTCTTTTGTTTTTAATTTTTTCTTTTATTGGATATTTTCTTTATTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGTTTTTAATTTTTTCTTTTATTGGATATTTTCTTTATTTACA  600

seq1  TTTCAATTATTGTCCCTTTTCCAGGTCTCTCCTCTGGAAACCCCCTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTATTGTCCCTTTTCCAGGTCTCTCCTCTGGAAACCCCCTCCCA  650

seq1  TCCCCCTCCCCCTGCCTCTATGAGGGTGCT-CCCTCACCCACCCACCCAC  699
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCACCCTCCCCCTGCCTCTATGAGGGTGCTCCCCTCACCCACCCACCCAC  700

seq1  TTCTGCCCTTCCCCCCTTGGCATTCCCCTACACTGG-AACATCGAACCCC  748
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCTGCCCTTCCCCCCTTGGCATTCCCCTACACTGGAAACATCGAACCCC  750

seq1  TTCAGGACCAAGGGCTGCTCCTCCCACTGATGTCCAAAGCCATCCTCTGC  798
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCA-GACCAAGGGCTGCTCCTCCCACTGATGTCCAAAGCCATCCTCTGC  799

seq1  CACATATGTGATGGGTCCTCCATGTGTACTCTTTGGTTGCTGGTCCATAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGTGATGGGTCCTCCATGTGTACTCTTTGGTTGCTGGTCCATAC  849

seq1  CCTAGGAGCTGGGGGGGGGGTCTG  872
      ||||||||||||||||||||||||
seq2  CCTAGGAGCTGGGGGGGGGGTCTG  873