BAC Information

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BAC

Clone NameB6Ng01-281P05
Chromosome3 (Build37)
Map Location 45,142,960 - 45,144,136
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296
Downstream genePcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281P05.bB6Ng01-281P05.g
ACCGA081296GA081297
length1,179879
definitionB6Ng01-281P05.b B6Ng01-281P05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcccaaactctggaaagaaatcagcatcagggaagaatgcctaa
taaggtagacatgtgttttccagtgaatttgaatatctaaagcttacagt
aaaaataactttcgttcaaagagaatagagtactattttgtagacatctt
gccttgcaggtcgtaattaatatctgtttggctgtgaaaaaaacaaaatt
atgtgtgaagcacatcagagggaaaataaacgagtgactaatgtgtcaca
gggaaggtgacatttgagtcaatgtttaaagataaataacagcaaacacg
gcagcaggaggaacattgcaaagctggaggtaacactaatataattattt
ggcctgaattttatcagcagttcaccagtgtagtgcagaaatatggaaat
tcccaggcaactgtagatgcaaagctgagaagtacatgcaaaaacattgg
agcggaaggtcaatggtacccaactgccaagggaccaaaagcatggtcaa
aatagttctatggtttttgttttctgtcagaaagaccatgatattaaagt
cttattgatttttttagaatacatgtttctttgcctatttttagtttttc
tatcaaaagaacttaacagaatgtttcagagctacattatagaatccctc
cttctctcgagtcaactgtacaacattgtctgaaatcgaaaacagcatca
gttgtgagactttccaattgtgaaattggtatgacttttcatgatattca
tgcaaaccttccgtaaataaaggttgaagatgtttattttgatttctatt
ttgttagattctgtaagaaaaagagacacaaaacagaaacatcttaagga
tgttctcagtcagatttggtaatttgaagtagtttgagagctaaagggtg
agaactcacactggatttaataaggtctaagtgtacaggctccatgtttt
gtaatccttaattaagtcccatgaaaaagtacagaacatgacaactaatc
ataacccacaagagttagagggggcttcatagaagaagtttgaaatagat
ttgaaatagagctgtggctaattcgtatgttttgtagcatttggtggaaa
tcctcctggagtttggatcaagtatcaacacaaaacttggcagtatgcag
gaatatcaggatagtcatactttggttac

gaattcatggagctctttctatcaagaagctcacatctatatgttctgac
aagtgtcctcagtgaggtctttgatggtgtcctgatctttctctttttta
cctatccctttctgattattgaatctcctaaactgatccttaaatgccca
tctcttttttctctgtttctgtgtgtgttttttttttttttttttttttt
ttttttttgtcttttcctttgacccttctgggacttgccttttttttttt
ttttttcctttttcttattatcccactgagttgcttcaactgggttttga
aattccccagttcccctttcctttacaatatttctttatacaaaaccaat
tcatatactgttggagctgtcttcaattatattcaaatatgttaaggata
ttttatactaaatcttatctctccttctaaatgttgttttctctaacttg
cattttttgggcatttggcttctcttttttgctatgaatggccttacctg
ctcaaactttatgatactggcttcctgtttaggactgacagcacatgtac
atcgtgatttgtcccagactgaatgaacgttcatgaagtcttcagtacag
actgatctagcccgcctattttttagggacaggacagttattatatggaa
atttgcctaccaatgatgctgtacattgacgagtttcttatgtctgcttg
taccacttctaactgctaatgctgagtgatagatgagaataagttagccg
tgctagatcacgaagtgttggcagatgatgacgattgtataccgatgcct
gcatgtaatcgatcagttcgtatgatcacagttcgttctcaattctatga
tcattgtgactttccaaccgcctcccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45142960_45144136
seq2: B6Ng01-281P05.b_47_1225

seq1  GAATTCTCCCAAACTCTGGAAAGAAATCAGCATCAGGGAAGAATGCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAAACTCTGGAAAGAAATCAGCATCAGGGAAGAATGCCTAA  50

seq1  TAAGGTAGACATGTGTTTTCCAGTGAATTTGAATATCTAAAGCTTACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGACATGTGTTTTCCAGTGAATTTGAATATCTAAAGCTTACAGT  100

seq1  AAAAATAACTTTCGTTCAAAGAGAATAGAGTACTATTTTGTAGACATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAACTTTCGTTCAAAGAGAATAGAGTACTATTTTGTAGACATCTT  150

seq1  GCCTTGCAGGTCGTAATTAATATCTGTTTGGCTGTGAAAAAAACAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCAGGTCGTAATTAATATCTGTTTGGCTGTGAAAAAAACAAAATT  200

seq1  ATGTGTGAAGCACATCAGAGGGAAAATAAACGAGTGACTAATGTGTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGAAGCACATCAGAGGGAAAATAAACGAGTGACTAATGTGTCACA  250

seq1  GGGAAGGTGACATTTGAGTCAATGTTTAAAGATAAATAACAGCAAACACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGTGACATTTGAGTCAATGTTTAAAGATAAATAACAGCAAACACG  300

seq1  GCAGCAGGAGGAACATTGCAAAGCTGGAGGTAACACTAATATAATTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGAGGAACATTGCAAAGCTGGAGGTAACACTAATATAATTATTT  350

seq1  GGCCTGAATTTTATCAGCAGTTCACCAGTGTAGTGCAGAAATATGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAATTTTATCAGCAGTTCACCAGTGTAGTGCAGAAATATGGAAAT  400

seq1  TCCCAGGCAACTGTAGATGCAAAGCTGAGAAGTACATGCAAAAACATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCAACTGTAGATGCAAAGCTGAGAAGTACATGCAAAAACATTGG  450

seq1  AGCGGAAGGTCAATGGTACCCAACTGCCAAGGGACCAAAAGCATGGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAAGGTCAATGGTACCCAACTGCCAAGGGACCAAAAGCATGGTCAA  500

seq1  AATAGTTCTATGGTTTTTGTTTTCTGTCAGAAAGACCATGATATTAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTCTATGGTTTTTGTTTTCTGTCAGAAAGACCATGATATTAAAGT  550

seq1  CTTATTGATTTTTTTAGAATACATGTTTCTTTGCCTATTTTTAGTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGATTTTTTTAGAATACATGTTTCTTTGCCTATTTTTAGTTTTTC  600

seq1  TATCAAAAGAACTTAACAGAATGTTTCAGAGCTACATTATAGAATCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAGAACTTAACAGAATGTTTCAGAGCTACATTATAGAATCCCTC  650

seq1  CTTCTCTCGAGTCAACTGTACAACATTGTCTGAAATCGAAAACAGCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCGAGTCAACTGTACAACATTGTCTGAAATCGAAAACAGCATCA  700

seq1  GTTGTGAGACTTTCCAATTGTGAAATTGGTATGACTTTTCATGATATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGACTTTCCAATTGTGAAATTGGTATGACTTTTCATGATATTCA  750

seq1  TGCAAACCTTCCGTAAATAAAGGTTGAAGATGTTTATTTTGATTTCTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACCTTCCGTAAATAAAGGTTGAAGATGTTTATTTTGATTTCTATT  800

seq1  TTGTTAGATTCTGTAAGAAAAAGAGACACAAAACAGAAACATCTTAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGATTCTGTAAGAAAAAGAGACACAAAACAGAAACATCTTAAGGA  850

seq1  TGTTCTCAGTCAGATTTGGTAATTTGAAGTAGTTTGAGAGCTAAAGGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAGTCAGATTTGGTAATTTGAAGTAGTTTGAGAGCTAAAGGGTG  900

seq1  AGAACTCACACTGGATTTAATAAGGTCTAAGTGTACAGGCTCCATGTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCACACTGGATTTAATAAGGTCTAAGTGTACAGGCTCCATGTTTT  950

seq1  GTAATCCTTAAATAAGTCCCATGAAAAAGTACAGAACATGAACAACTAAT  1000
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  GTAATCCTTAATTAAGTCCCATGAAAAAGTACAGAACATG-ACAACTAAT  999

seq1  CATAACCCACAAGAGTTAAGAGGGGCTTCATAG-AGA--GTTGAAATAGA  1047
      ||||||||||||||||||   |||||||||||| |||   ||||||||||
seq2  CATAACCCACAAGAGTTAGAGGGGGCTTCATAGAAGAAGTTTGAAATAGA  1049

seq1  TTTGAAATAAGAGGCTGTGGCTAA-TCGTATGTTTTGTTAGCATTT-GTG  1095
      |||||||| ||| ||||||||||| |||||||||||| |||||||| |||
seq2  TTTGAAAT-AGA-GCTGTGGCTAATTCGTATGTTTTG-TAGCATTTGGTG  1096

seq1  --AAT-CTC--TGAGTTTGATTACAAGTATC-ACACAAAACTTGGGATGT  1139
        ||| |||   |||||||  | |||||||| ||||||||||||| | ||
seq2  GAAATCCTCCTGGAGTTTGGAT-CAAGTATCAACACAAAACTTGGCA-GT  1144

seq1  ACATGCAGGAATATCAGGATAAAGTCATAC-TTGGTTAC  1177
        ||||||||||||||||||  |||||||| ||||||||
seq2  --ATGCAGGAATATCAGGAT--AGTCATACTTTGGTTAC  1179


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