BAC Information

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BAC

Clone NameB6Ng01-282B01
Chromosome3 (Build37)
Map Location 81,526,932 - 81,647,518
singlet/doubletdoublet
Overlap genenone
Upstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282B01.bB6Ng01-282B01.g
ACCGA081380GA081381
length1,191488
definitionB6Ng01-282B01.b B6Ng01-282B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,526,932 - 81,528,093)(81,647,025 - 81,647,518)
sequence
gaattcaaaggaaggtttgagtgttttaagacctttgcctaaaacttaaa
ggcacacagatttaatgcctgcattccattttgcaaactctaaagtgcag
gatagtgacagtagcccaagatatcagaatgcttgagataagacataaaa
agagtcacttgtaacccaatctgttatgtcaagaatccatgagcttccca
tttaccaagtgggaagtgactgaacctttaggaaaaagagcctgcctggt
aggaggtctttaaatcttcacatgggtctctccaaagaatgatgggcttc
tggcctgttcagtcatttacttgcttcaagcttcatgagctaaacaagtc
acttgcatcagtacgtccagccctcaccagaatccaaacacatggggctg
ccccatttaagcaaggtgcctgcagaggttaactagaacttctaattgtt
tttattccttgtgtgtgtgtgcatgtgtgtgtttgtgtgtgtgtgcactt
gtgtgtgtgtgtcatataaaaattatttattttcacttttattccatttc
ttaattacaacggagaataataaataggtttgctgcggtattttcatatg
gaattttattttgcactttgcaaactggttatatggtttccataacagcc
atgatgtttttggcttttatcaataccttgaagctatattttctctatat
tcttgtcataaggtttccatttcttcactacacattctaataaacaatgt
gatattttagatcatcatagttttaacttaaagttttctaagaattgtga
tgactattcttttttttcttttgggggggatttttctttatttacattta
aaatgttaacccctttccaggtctcccctctagaaacctcctatcccatc
cccttctccctgcctctatgaggatgttcccccactgtgatggtttgtat
gtttcttggaccaggagtgggcaccattttggaggagtggcctttctttg
gattattgtgtgacctggttggagtaggttgtgttcaactgttggtgtgg
gacattaagattcctccacctcttagttgccttgcaatttcatgtctttc
actaactaggctcttttggatttaagattgtagaactctccagccctcct
ctggcacatgcctggctgtatacgtcttatgtctcccacct
cacatcattaaggaaacctttatgcatgagacttttccatgacaactgta
atgaactcaatgatctgcataccacttgacattgttcagttctaaataat
gctcttgaaatatactgagcagtgcagaagatcatagtgaaatttaaaaa
taacataaacttacaagtcagttttctgtcacactcagcacgctgttgtg
gcctcacatgcttcatgaggcttgtggattctgccccacacagtgtagaa
gggtctttccaatatggctgactatttctttaagctttcaggccctggaa
caaaatacatgagataaaaatcttacaagtatgagatgcttcttttggct
tacagttacagaggtttctaatctcttcaccctttgctttggacctgcgg
cacagtaccacacagcaactgtgcctggtggaggagctgctcaagtcaca
gcagccaggaggaagagagagggagagggagagggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81526932_81528093
seq2: B6Ng01-282B01.b_47_1237

seq1  GAATTCAAAGGAAGGTTTGAGTGTTTTAAGACCTTTGCCTAAAACTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGAAGGTTTGAGTGTTTTAAGACCTTTGCCTAAAACTTAAA  50

seq1  GGCACACAGATTTAATGCCTGCATTCCATTTTGCAAACTCTAAAGTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACAGATTTAATGCCTGCATTCCATTTTGCAAACTCTAAAGTGCAG  100

seq1  GATAGTGACAGTAGCCCAAGATATCAGAATGCTTGAGATAAGACATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGACAGTAGCCCAAGATATCAGAATGCTTGAGATAAGACATAAAA  150

seq1  AGAGTCACTTGTAACCCAATCTGTTATGTCAAGAATCCATGAGCTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACTTGTAACCCAATCTGTTATGTCAAGAATCCATGAGCTTCCCA  200

seq1  TTTACCAAGTGGGAAGTGACTGAACCTTTAGGAAAAAGAGCCTGCCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAGTGGGAAGTGACTGAACCTTTAGGAAAAAGAGCCTGCCTGGT  250

seq1  AGGAGGTCTTTAAATCTTCACATGGGTCTCTCCAAAGAATGATGGGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTCTTTAAATCTTCACATGGGTCTCTCCAAAGAATGATGGGCTTC  300

seq1  TGGCCTGTTCAGTCATTTACTTGCTTCAAGCTTCATGAGCTAAACAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGTTCAGTCATTTACTTGCTTCAAGCTTCATGAGCTAAACAAGTC  350

seq1  ACTTGCATCAGTACGTCCAGCCCTCACCAGAATCCAAACACATGGGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATCAGTACGTCCAGCCCTCACCAGAATCCAAACACATGGGGCTG  400

seq1  CCCCATTTAAGCAAGGTGCCTGCAGAGGTTAACTAGAACTTCTAATTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTAAGCAAGGTGCCTGCAGAGGTTAACTAGAACTTCTAATTGTT  450

seq1  TTTATTCCTTGTGTGTGTGTGCATGTGTGTGTTTGTGTGTGTGTGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCTTGTGTGTGTGTGCATGTGTGTGTTTGTGTGTGTGTGCACTT  500

seq1  GTGTGTGTGTGTCATATAAAAATTATTTATTTTCACTTTTATTCCATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTCATATAAAAATTATTTATTTTCACTTTTATTCCATTTC  550

seq1  TTAATTACAACGGAGAATAATAAATAGGTTTGCTGCGGTATTTTCATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACAACGGAGAATAATAAATAGGTTTGCTGCGGTATTTTCATATG  600

seq1  GAATTTTATTTTGCACTTTGCAAACTGGTTATATGGTTTCCATAACAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTATTTTGCACTTTGCAAACTGGTTATATGGTTTCCATAACAGCC  650

seq1  ATGATGTTTTTGGCTTTTATCAATACCTTGAAGCTATATTTTCTCTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTTTTGGCTTTTATCAATACCTTGAAGCTATATTTTCTCTATAT  700

seq1  TCTTGTCATAAGGTTTCCATTTCTTCACTACACATTCTAATAAACAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCATAAGGTTTCCATTTCTTCACTACACATTCTAATAAACAATGT  750

seq1  GATATTTTAGATCATCATAGTTTTAACTTAAAGTTTTCTAAGAATTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTAGATCATCATAGTTTTAACTTAAAGTTTTCTAAGAATTGTGA  800

seq1  TGACTATTC-TTTTTTTCTTTT-GGGGGGATTTTTCTTTATTTACATTTA  848
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  TGACTATTCTTTTTTTTCTTTTGGGGGGGATTTTTCTTTATTTACATTTA  850

seq1  AAATGTTAACCCCTTTCCAGGTCTCCCCTCTAGAAACCTCCTATCCCATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAACCCCTTTCCAGGTCTCCCCTCTAGAAACCTCCTATCCCATC  900

seq1  CCCTTCTCCCTGCCTCTATGAGGATGTTCCCCCACTGTGATGGTTTGTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCCCTGCCTCTATGAGGATGTTCCCCCACTGTGATGGTTTGTAT  950

seq1  G-TTCTTGGACCAGGGAGT-GGCACCA-TTTGGAGGAGTGGCCTT--CTT  993
      | ||||||||||| ||||| ||||||| |||||||||||||||||   ||
seq2  GTTTCTTGGACCA-GGAGTGGGCACCATTTTGGAGGAGTGGCCTTTCTTT  999

seq1  GGAATA-TGTGTGACCTGGTTGGAGTAGG-TGTGT--CACTGTTGGTGTG  1039
      ||| || |||||||||||||||||||||| |||||   ||||||||||||
seq2  GGATTATTGTGTGACCTGGTTGGAGTAGGTTGTGTTCAACTGTTGGTGTG  1049

seq1  GG-CA-TAAGA-TCCTCACCC---TAGTTG-CTTGGAA-TTCA-GTCTTC  1080
      || || ||||| |||||  ||   |||||| |||| || |||| ||||| 
seq2  GGACATTAAGATTCCTCCACCTCTTAGTTGCCTTGCAATTTCATGTCTTT  1099

seq1  CACTAAC-AG---CCTTTGGA-TTAAGA-TGTAGAACTCT-CAG--CTCC  1121
      ||||||| ||   | |||||| |||||| ||||||||||| |||  ||||
seq2  CACTAACTAGGCTCTTTTGGATTTAAGATTGTAGAACTCTCCAGCCCTCC  1149

seq1  TCCTGCACCATGCCTGCCTGGATAC-TGCTATG-CTCCCACCT  1162
      ||  ||| |||||||| ||| |||| |  |||| |||||||||
seq2  TCTGGCA-CATGCCTGGCTGTATACGTCTTATGTCTCCCACCT  1191

seq1: chr3_81647025_81647518
seq2: B6Ng01-282B01.g_67_560 (reverse)

seq1  TCTCCCTCTCCCTCTCCCTCTCTCTTCCTCCTGGCTGCTGTGACTTGAGC  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTCTCCCTCTCCCTCTCTCTTCCTCCTGGCTGCTGTGACTTGAGC  50

seq1  AGCTCCTCCACCAGGCACTGTTGCTGTGTGGTACTGTGCCGCAGGTCCAA  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCTCCTCCACCAGGCACAGTTGCTGTGTGGTACTGTGCCGCAGGTCCAA  100

seq1  AGCAAAGGGTGAAGAGATTAGAAACCTCTGTAACTGTAAGCCAAAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGGTGAAGAGATTAGAAACCTCTGTAACTGTAAGCCAAAAGAAG  150

seq1  CATCTCATACTTGTAAGATTTTTATCTCATGTATTTTGTTCCAGGGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATACTTGTAAGATTTTTATCTCATGTATTTTGTTCCAGGGCCTG  200

seq1  AAAGCTTAAAGAAATAGTCAGCCATATTGGAAAGACCCTTCTACACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTAAAGAAATAGTCAGCCATATTGGAAAGACCCTTCTACACTGTG  250

seq1  TGGGGCAGAATCCACAAGCCTCATGAAGCATGTGAGGCCACAACAGCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGAATCCACAAGCCTCATGAAGCATGTGAGGCCACAACAGCGTG  300

seq1  CTGAGTGTGACAGAAAACTGACTTGTAAGTTTATGTTATTTTTAAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTGACAGAAAACTGACTTGTAAGTTTATGTTATTTTTAAATTTC  350

seq1  ACTATGATCTTCTGCACTGCTCAGTATATTTCAAGAGCATTATTTAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATCTTCTGCACTGCTCAGTATATTTCAAGAGCATTATTTAGAAC  400

seq1  TGAACAATGTCAAGTGGTATGCAGATCATTGAGTTCATTACAGTTGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATGTCAAGTGGTATGCAGATCATTGAGTTCATTACAGTTGTCAT  450

seq1  GGAAAAGTCTCATGCATAAAGGTTTCCTTAATGATGTGGAATTC  494
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTCTCATGCATAAAGGTTTCCTTAATGATGTGGAATTC  494