BAC Information

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BAC

Clone NameB6Ng01-282B13
Chromosome3 (Build37)
Map Location 108,038,249 - 108,159,153
singlet/doubletdoublet
Overlap geneLOC668686, Psma5, Sort1
Upstream geneProk1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2
Downstream geneMybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282B13.bB6Ng01-282B13.g
ACCGA081404GA081405
length1,1541,112
definitionB6Ng01-282B13.b B6Ng01-282B13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,157,997 - 108,159,153)(108,038,249 - 108,039,344)
sequence
gaattcttgataaattaaaacaaacagaacaggagttaggcgtgcagagt
ctatggttgcgctcatatggtccaacacacttagccagggtacatctcca
ccccccagatgacggggctagcacaccagcataggggaatctgaacacca
gcctggaagctgtagtgcagggccttcaatgtcaaagtcacagtggaagc
cttggccactgcctcaaagcaggcatgtccaaccttttcacattgcaacg
tgatgctgtcatctataaagttcatgcttgagaactgctcaattgagtta
cgggaaaaaaaatcgcatgaagaattcatgttttaaataagtgtacaaat
ttgtgtcagtccgcctttatagctattcttggttgtatgtaggcctgggg
cgacaggttggacatgcctagaagatcgctttggtcacctgttccctgtc
cctcatttacaactcctagaggttatgggtggagcaggaggaggctgaga
gaatggggtgttgaatgggtctattactagactaccctctttgaagacgt
gtgccgatgctgttccaggaaggccactatatgacacgaagatctcagtt
gttactaccttttggcatgtttttacagataagccttatcagatcattgt
tttcgtgtaacctacctgcttctgggtaggagataggaagtgtgtgtttt
cagtgtatccaagaggaggcggagctggattctgggacaagctgtgtccc
tgtgggcgggagtcctgtgcaatcatacacacacaaacactctgaggaca
gccaccagcagtccagggcaggggtgcagagaagggggaactgcctcccc
ttaccaatacacacacccacacactcttccctcattgccttcagggtccc
tcccctgtcagtgtctcctcccttgaacagcaagggatgaggtgctggac
tgtcaggcattaggaagatgggccctcaagttatctcccaaggtcattgc
tgggccctgcgatgcttaatgagagtctcccctaacagtaacctcatctg
tagagctccaccagacagatggccaccactcttctatgattgacgtgaga
acgttcatatgatcatagctcagctttgttctagccacactggccatgca
tcag
gaattcatatatttgtaacctctcccctggaaaaaaaaaattagtacagt
atgaaaactgcaatagaagtatcaccagagggggaaaatatttatatttc
tgtgagccaggaaagggaacagaagtagaggcaggagcatgtcccaggag
agaggcaagaaacagaagagatacaaactctgggcatccctggagaatag
aggaaggaggtgatgaatgactgtggtgattggaaagaaaatggccccat
agccgagcagtggtggcacacgcctttaatcccagcacttgggaggtaga
agcaggcggatttctgagtttgaggccagtctcgtctacagaatgagttc
caggacagccagggctacacagagaaaccctgtctcgaaaaaccaaaaga
aaaaaggaaaaggaaaaaagaaaatggccccttagcctcagagggagtgg
cactgttaggaggtgtggccttgttagaggaagtgtgtcactgggggtgg
gctttgagagttcaaatgctcaagccaccagtgtggcaatctttcttctt
tgatgcctgtggaagtagaactctcagctccttctccagtaatatgtttg
cctgcataccgccatgctcctgccatgatgataatggactaaacctcaga
aactgtaagccagccccagttaaatgttgtcctttttaagagttgtcata
gtcatggtgtctcttcacagcaatagaaaccctaactaagacaatagatg
attccgttagaaatggtttgcatactgtggaaagagaggtctctttttgc
ataacatgcaaagacaggggtccctcacaaaacaattttatgtaaagaac
aaatataaacagacatcagtcagaatgctattaaattgcagcagtggtgg
ggggttcagggatagagcaccaaagtagtccaagggaagtgatcataact
gagctgagtgggagattgtgggaaatggagagggagatggctagaaaaaa
tttgagaaggttaaacaagcagagctttagttaggtgcaagctcacgtcc
atgtgagttcccattcctgtatcccagtaagtggctatttgttaaggtca
cgcccatgctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_108157997_108159153
seq2: B6Ng01-282B13.b_45_1198 (reverse)

seq1  CTGATGCATGCCAAGTGT-GCTAGAACAAAAGCTGAGCTATGATCATAAT  49
      |||||||||| | ||||| |||||||| ||||||||||||||||||| ||
seq2  CTGATGCATGGCCAGTGTGGCTAGAAC-AAAGCTGAGCTATGATCAT-AT  48

seq1  GGACCGTCTCACGTCAAATCATAGGAAGAGTGGTGCCCATCTGTCTGGTG  99
      | ||  ||||||||| ||||||| ||||||||||| ||||||||||||||
seq2  GAACGTTCTCACGTC-AATCATA-GAAGAGTGGTGGCCATCTGTCTGGTG  96

seq1  GAGCTCTACAGATGAGGTAACTGTTA-GGGAGACCTCCTCATTAAGCATC  148
      |||||||||||||||||| ||||||| |||||||   |||||||||||||
seq2  GAGCTCTACAGATGAGGTTACTGTTAGGGGAGAC--TCTCATTAAGCATC  144

seq1  GCAGGG-CCAGCAATGA-CTTGGGAGATAACCTGAGGGCCCATCTTCCTA  196
      |||||| |||||||||| ||||||||||||| ||||||||||||||||||
seq2  GCAGGGCCCAGCAATGACCTTGGGAGATAACTTGAGGGCCCATCTTCCTA  194

seq1  ATGCCTGACAGTCCCAGCACCTCATCCC-TGCTGTTCAAAGGGAGGAGAC  245
      |||||||||||| ||||||||||||||| |||||||| ||||||||||||
seq2  ATGCCTGACAGT-CCAGCACCTCATCCCTTGCTGTTC-AAGGGAGGAGAC  242

seq1  ACTGACAGGGGAGGGACCCTGAAGGCAATGAGGGAAGAGTGTGTGGGTGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGGGGAGGGACCCTGAAGGCAATGAGGGAAGAGTGTGTGGGTGT  292

seq1  GTGTATTGGTAAGGGGAGGCAGTTCCCCCTTCTCTGCACCCCTGCCCTGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTGGTAAGGGGAGGCAGTTCCCCCTTCTCTGCACCCCTGCCCTGG  342

seq1  ACTGCTGGTGGCTGTCCTCAGAGTGTTTGTGTGTGTATGATTGCACAGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGTGGCTGTCCTCAGAGTGTTTGTGTGTGTATGATTGCACAGGA  392

seq1  CTCCCGCCCACAGGGACACAGCTTGTCCCAGAATCCAGCTCCGCCTCCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGCCCACAGGGACACAGCTTGTCCCAGAATCCAGCTCCGCCTCCTC  442

seq1  TTGGATACACTGAAAACACACACTTCCTATCTCCTACCCAGAAGCAGGTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATACACTGAAAACACACACTTCCTATCTCCTACCCAGAAGCAGGTA  492

seq1  GGTTACACGAAAACAATGATCTGATAAGGCTTATCTGTAAAAACATGCCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACACGAAAACAATGATCTGATAAGGCTTATCTGTAAAAACATGCCA  542

seq1  AAAGGTAGTAACAACTGAGATCTTCGTGTCATATAGTGGCCTTCCTGGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAGTAACAACTGAGATCTTCGTGTCATATAGTGGCCTTCCTGGAA  592

seq1  CAGCATCGGCACACGTCTTCAAAGAGGGTAGTCTAGTAATAGACCCATTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCGGCACACGTCTTCAAAGAGGGTAGTCTAGTAATAGACCCATTC  642

seq1  AACACCCCATTCTCTCAGCCTCCTCCTGCTCCACCCATAACCTCTAGGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCCATTCTCTCAGCCTCCTCCTGCTCCACCCATAACCTCTAGGAG  692

seq1  TTGTAAATGAGGGACAGGGAACAGGTGACCAAAGCGATCTTCTAGGCATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATGAGGGACAGGGAACAGGTGACCAAAGCGATCTTCTAGGCATG  742

seq1  TCCAACCTGTCGCCCCAGGCCTACATACAACCAAGAATAGCTATAAAGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCTGTCGCCCCAGGCCTACATACAACCAAGAATAGCTATAAAGGC  792

seq1  GGACTGACACAAATTTGTACACTTATTTAAAACATGAATTCTTCATGCGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGACACAAATTTGTACACTTATTTAAAACATGAATTCTTCATGCGA  842

seq1  TTTTTTTTCCCGTAACTCAATTGAGCAGTTCTCAAGCATGAACTTTATAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCCGTAACTCAATTGAGCAGTTCTCAAGCATGAACTTTATAG  892

seq1  ATGACAGCATCACGTTGCAATGTGAAAAGGTTGGACATGCCTGCTTTGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCATCACGTTGCAATGTGAAAAGGTTGGACATGCCTGCTTTGAG  942

seq1  GCAGTGGCCAAGGCTTCCACTGTGACTTTGACATTGAAGGCCCTGCACTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGCCAAGGCTTCCACTGTGACTTTGACATTGAAGGCCCTGCACTA  992

seq1  CAGCTTCCAGGCTGGTGTTCAGATTCCCCTATGCTGGTGTGCTAGCCCCG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCAGGCTGGTGTTCAGATTCCCCTATGCTGGTGTGCTAGCCCCG  1042

seq1  TCATCTGGGGGGTGGAGATGTACCCTGGCTAAGTGTGTTGGACCATATGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGGGGGTGGAGATGTACCCTGGCTAAGTGTGTTGGACCATATGA  1092

seq1  GCGCAACCATAGACTCTGCACGCCTAACTCCTGTTCTGTTTGTTTTAATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAACCATAGACTCTGCACGCCTAACTCCTGTTCTGTTTGTTTTAATT  1142

seq1  TATCAAGAATTC  1157
      ||||||||||||
seq2  TATCAAGAATTC  1154

seq1: chr3_108038249_108039344
seq2: B6Ng01-282B13.g_67_1178

seq1  GAATTCATATATTTGTAACCTCTCCCCTGGAAAAAAAAAATTAGTACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATTTGTAACCTCTCCCCTGGAAAAAAAAAATTAGTACAGT  50

seq1  ATGAAAACTGCAATAGAAGTATCACCAGAGGGGGAAAATATTTATATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACTGCAATAGAAGTATCACCAGAGGGGGAAAATATTTATATTTC  100

seq1  TGTGAGCCAGGAAAGGGAACAGAAGTAGAGGCAGGAGCATGTCCCAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCAGGAAAGGGAACAGAAGTAGAGGCAGGAGCATGTCCCAGGAG  150

seq1  AGAGGCAAGAAACAGAAGAGATACAAACTCTGGGCATCCCTGGAGAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAGAAACAGAAGAGATACAAACTCTGGGCATCCCTGGAGAATAG  200

seq1  AGGAAGGAGGTGATGAATGACTGTGGTGATTGGAAAGAAAATGGCCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAGGTGATGAATGACTGTGGTGATTGGAAAGAAAATGGCCCCAT  250

seq1  AGCCGAGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGAGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGTAGA  300

seq1  AGCAGGCGGATTTCTGAGTTTGAGGCCAGTCTCGTCTACAGAATGAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCGGATTTCTGAGTTTGAGGCCAGTCTCGTCTACAGAATGAGTTC  350

seq1  CAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAGA  400

seq1  AAAAAGGAAAAGGAAAAAAGAAAATGGCCCCTTAGCCTCAGAGGGAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAAAGGAAAAAAGAAAATGGCCCCTTAGCCTCAGAGGGAGTGG  450

seq1  CACTGTTAGGAGGTGTGGCCTTGTTAGAGGAAGTGTGTCACTGGGGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTAGGAGGTGTGGCCTTGTTAGAGGAAGTGTGTCACTGGGGGTGG  500

seq1  GCTTTGAGAGTTCAAATGCTCAAGCCACCAGTGTGGCAATCTTTCTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGAGTTCAAATGCTCAAGCCACCAGTGTGGCAATCTTTCTTCTT  550

seq1  TGATGCCTGTGGAAGTAGAACTCTCAGCTCCTTCTCCAGTAATATGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTGTGGAAGTAGAACTCTCAGCTCCTTCTCCAGTAATATGTTTG  600

seq1  CCTGCATACCGCCATGCTCCTGCCATGATGATAATGGACTAAACCTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATACCGCCATGCTCCTGCCATGATGATAATGGACTAAACCTCAGA  650

seq1  AACTGTAAGCCAGCCCCAGTTAAATGTTGTCCTTTTTAAGAGTTGTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAAGCCAGCCCCAGTTAAATGTTGTCCTTTTTAAGAGTTGTCATA  700

seq1  GTCATGGTGTCTCTTCACAGCAATAGAAACCCTAACTAAGACAATAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTGTCTCTTCACAGCAATAGAAACCCTAACTAAGACAATAGATG  750

seq1  ATTCCGTTAGAAATGGTTTGCATACTGTGGAAAGAGAGGTCTCTTTTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGTTAGAAATGGTTTGCATACTGTGGAAAGAGAGGTCTCTTTTTGC  800

seq1  ATAACATGCAAAGACAGGGGTCCCTCACAAAACAATTTTATGTAAAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGCAAAGACAGGGGTCCCTCACAAAACAATTTTATGTAAAGAAC  850

seq1  AAATATAAACAGACATCAGTCAGAATGCTATTAAATTGCAGCAGTGGT-G  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAATATAAACAGACATCAGTCAGAATGCTATTAAATTGCAGCAGTGGTGG  900

seq1  GGGGTTCAGGGATAGAGCACCAAAGTAGTCCAA-GGAAGTGATCATAACT  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGGTTCAGGGATAGAGCACCAAAGTAGTCCAAGGGAAGTGATCATAACT  950

seq1  GAGCTGAGGTGGAGATTGTGGG-AATGGAGA-GGAGATGGCTAAGAAAAA  996
      ||||||||  |||||||||||| |||||||| |||||||||||  |||||
seq2  GAGCTGAGTGGGAGATTGTGGGAAATGGAGAGGGAGATGGCTAGAAAAAA  1000

seq1  TTTGAG-AGGTAGAGCAAGCAGAGC-TTAGTTATGTGC-AGCTCACTTCT  1043
      |||||| ||||  | |||||||||| ||||||| |||| ||||||| || 
seq2  TTTGAGAAGGTTAAACAAGCAGAGCTTTAGTTAGGTGCAAGCTCACGTCC  1050

seq1  A-GT-AG-TCACA-TCCTGTAT-CCAGTAAGTGCATAT---GTAAGGT-A  1084
      | || || || || |||||||| ||||||||||  |||    |||||| |
seq2  ATGTGAGTTCCCATTCCTGTATCCCAGTAAGTGGCTATTTGTTAAGGTCA  1100

seq1  AGCCCATGCTGT  1096
       |||||||||||
seq2  CGCCCATGCTGT  1112