BAC Information

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BAC

Clone NameB6Ng01-282H06
Chromosome3 (Build37)
Map Location 95,574,433 - 95,750,847
singlet/doubletdoublet
Overlap gene4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e
Upstream geneCgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2
Downstream geneLOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282H06.bB6Ng01-282H06.g
ACCGA081666GA081667
length1,1311,147
definitionB6Ng01-282H06.b B6Ng01-282H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,574,433 - 95,575,571)(95,749,724 - 95,750,847)
sequence
gaattccactttctaaaagcaaaagaaaaatgacaaactctgctattcca
taaggaggtattttttgtgtttttatttcttatcctgtcagatctgattt
cttcaagtgacaagaaggacaacttgcaatctgcagagcaaaaggaactc
tataaataccgtgttgcatctataggagaaactaatatacgtgacttcaa
gattttctgtatctatatagaatgacaacagaaagtgcaaagtcaaaagc
atcaaaatctcttgagctgtacacaatcaaatattgtagattatcatcaa
tattttgtgccataaaaaagaaaaaatacagtgcactcatgtaaataaaa
taaatctttaaaaaaagaaaaaggaaaacgaaaaaacagtaacatcccac
tgcagcataggctagcctgtaactggggatctagtcttctaagaattggg
attactggaaacatcaattcttaattgctagttccaacagagaagggttt
cagaaggtcactggatcttctatttagttctgtaaaataaaactctcttt
gaatgactactgaagaagcaatagtaatagactgtcccagaacagttcag
gaacagaaagtaatagctatttatatgctctactcataaggacagggttc
cttaccttatcgctgctgatattctagcatagatacatttttttgtggtt
ggagactattctatgcattataagatattcaacgacatttctctgacatt
gacccattagtgcttaggagtttctgtcccagttgaaacaaacaaaagta
tctctagttattactaagtgtcacctagaagtccctggctttagcaacga
tacagatctggtatttacaattaactgcatcattatactgagatgtttaa
gaaggttgtgtaggaatctggaaaataagaattgaaagatcaagtgattc
atgaaaaactgaggcagttgtatatacagacactgagaaagcaaaaaata
gaagtttaaatgagcagagactacaacagaacggagaaaacagatatata
ggttatgttgatatagttatatattaaaactcaacacacaccactaacct
gcactagagctagcatatgtaagccttacag
gaattctttagagactgacagcaggagttccaattactgaaacaaggaaa
caaagccaatcctttggcgatccctgcacttgcgctgaactcagtacaca
tttatctcagtcaggcatgcaacttttattagcttctctacaaataagtt
catacttgctatgttaaaaaccaggtcagacatgtgaagttgaaagagca
gcagccccactgttgcaatttcgatgtgtcccagaagagaggcaaaatac
gtatgctgatgctaagtttaaaaagaaagaaaaagacaaaacaaaacaaa
aacccacctgaagtatataaaacaaaaggaaaacaaaaactggcaaccaa
gacttaaaaagcaagtgccttgtgcatggagcttccgggacaaagggaga
gagagagaggggcctgtccgctcatgtttgaagccacgagaaaacacata
cccgtaccccaaatgttttttctatttttcagacattcatttgaaataaa
taccaacacttcaagattgattttcaaacagtctcctattgccactatgt
tccaatcaaaggctacaactgatcacgctttcaaaactacaggaagaatt
aaaggttgctctcagaaacataataaatacttcacagagttggtatccaa
atcactaggaaaacttagaaactagcccttgaacgtctcatcagttctca
gctggcaatcagtctgacctctgcgagaggacgctgctgcttatcctagc
agactcgggccgtcagcaacgcctgcctctgacacgaagccctcggtact
gtaactttgaatgctccatctcttccatgccactttgttttgaaaccgag
acagatggctgaggtgcagatgaagtctctgggggcattacagctttttg
ccagctttctttttggaatgggaaacagggaatgaagccaatgaaagtga
cagaaccctttcttggagcagctgggagggggaacacacagcttgaaccc
gacgacaagccttgctgggcaacggccacccagagaccgcctccaacggc
aagtcttggcccttagaaagggacaggctcttaaaggcctgactttcact
gaacagaacgggagtccatgacctgctctggaagagaaaccctctcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95574433_95575571
seq2: B6Ng01-282H06.b_45_1175

seq1  GAATTCCACTTTCTAAAAGCAAAAGAAAAATGACAAACTCTGCTATTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTCTAAAAGCAAAAGAAAAATGACAAACTCTGCTATTCCA  50

seq1  TAAGGAGGTATTTTTTGTGTTTTTATTTCTTATCCTGTCAGATCTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGGTATTTTTTGTGTTTTTATTTCTTATCCTGTCAGATCTGATTT  100

seq1  CTTCAAGTGACAAGAAGGACAACTTGCAATCTGCAGAGCAAAAGGAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTGACAAGAAGGACAACTTGCAATCTGCAGAGCAAAAGGAACTC  150

seq1  TATAAATACCGTGTTGCATCTATAGGAGAAACTAATATACGTGACTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATACCGTGTTGCATCTATAGGAGAAACTAATATACGTGACTTCAA  200

seq1  GATTTTCTGTATCTATATAGAATGACAACAGAAAGTGCAAAGTCAAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTGTATCTATATAGAATGACAACAGAAAGTGCAAAGTCAAAAGC  250

seq1  ATCAAAATCTCTTGAGCTGTACACAATCAAATATTGTAGATTATCATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATCTCTTGAGCTGTACACAATCAAATATTGTAGATTATCATCAA  300

seq1  TATTTTGTGCCATAAAAAAGAAAAAATACAGTGCACTCATGTAAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGCCATAAAAAAGAAAAAATACAGTGCACTCATGTAAATAAAA  350

seq1  TAAATCTTTAAAAAAAGAAAAAGGAAAACGAAAAAACAGTAACATCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTTAAAAAAAGAAAAAGGAAAACGAAAAAACAGTAACATCCCAC  400

seq1  TGCAGCATAGGCTAGCCTGTAACTGGGGATCTAGTCTTCTAAGAATTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCATAGGCTAGCCTGTAACTGGGGATCTAGTCTTCTAAGAATTGGG  450

seq1  ATTACTGGAAACATCAATTCTTAATTGCTAGTTCCAACAGAGAAGGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGGAAACATCAATTCTTAATTGCTAGTTCCAACAGAGAAGGGTTT  500

seq1  CAGAAGGTCACTGGATCTTCTATTTAGTTCTGTAAAATAAAACTCTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTCACTGGATCTTCTATTTAGTTCTGTAAAATAAAACTCTCTTT  550

seq1  GAATGACTACTGAAGAAGCAATAGTAATAGACTGTCCCAGAACAGTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACTACTGAAGAAGCAATAGTAATAGACTGTCCCAGAACAGTTCAG  600

seq1  GAACAGAAAGTAATAGCTATTTATATGCTCTACTCATAAGGACAGGGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAAGTAATAGCTATTTATATGCTCTACTCATAAGGACAGGGTTC  650

seq1  CTTACCTTATCGCTGCTGATATTCTAGCATAGATACATTTTTTTGTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTTATCGCTGCTGATATTCTAGCATAGATACATTTTTTTGTGGTT  700

seq1  GGAGACTATTCTATGCATTATAAGATATTCAACGACATTTCTCTGACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTATTCTATGCATTATAAGATATTCAACGACATTTCTCTGACATT  750

seq1  GACCCATTAGTGCTTAGGAGTTTCTGTCCCAGTTGAAACAAACAAAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATTAGTGCTTAGGAGTTTCTGTCCCAGTTGAAACAAACAAAAGTA  800

seq1  TCTCTAGTTATTACTAAGTGTCACCTAGAAGTCCCTGGCTTTAGCAACGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGTTATTACTAAGTGTCACCTAGAAGTCCCTGGCTTTAGCAACGA  850

seq1  TACAGATCTGGTATTTACAATTAACTGCATCATTATACTGAGATGTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATCTGGTATTTACAATTAACTGCATCATTATACTGAGATGTTTAA  900

seq1  GAAGGTTGTGTAGGAATCTGGAAAATAAGAATTGAAAGATCAAGTGATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTGTGTAGGAATCTGGAAAATAAGAATTGAAAGATCAAGTGATTC  950

seq1  ATGAAAAACTGAGGCAGTTGTATATACAAGACAACTGAGAAAGCAAAAAA  1000
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  ATGAAAAACTGAGGCAGTTGTATATAC-AGAC-ACTGAGAAAGCAAAAAA  998

seq1  TAGAAGTTTAAATGAGGCAGAGACTACAAACAGAAGGGAGAAAACAAGAT  1050
      ||||||||||||||| ||||||||||| ||||||| ||||||||| ||||
seq2  TAGAAGTTTAAATGA-GCAGAGACTAC-AACAGAACGGAGAAAAC-AGAT  1045

seq1  ATATAGGTTATGTTTGATATAGGTTATAATATTAAAACTCAACACACA-C  1099
      |||||||||||| |||||||| ||||| |||||||||||||||||||| |
seq2  ATATAGGTTATG-TTGATATA-GTTAT-ATATTAAAACTCAACACACACC  1092

seq1  ACTACCCTGCACTAAGAGCTAGGGTTAATGTAAGC--TACAG  1139
      |||| |||||||| ||||||||  |  ||||||||  |||||
seq2  ACTAACCTGCACT-AGAGCTAGCAT--ATGTAAGCCTTACAG  1131

seq1: chr3_95749724_95750847
seq2: B6Ng01-282H06.g_66_1212 (reverse)

seq1  CGAGAGGG-TTCTCTT-CAGAGGCAGGTCATGGACT-CAGTTCTGCTCAG  47
      |||||||| ||||||| |||| |||||||||||||| | |||||| ||||
seq2  CGAGAGGGTTTCTCTTCCAGA-GCAGGTCATGGACTCCCGTTCTGTTCAG  49

seq1  TGACAGTTCAGGGCCCTTTAAGGAGCCTGTCCCTTTCTAAGG--CCAGAC  95
      ||| || |||||  ||||||| ||||||||||||||||||||  | ||||
seq2  TGAAAG-TCAGG--CCTTTAA-GAGCCTGTCCCTTTCTAAGGGCCAAGAC  95

seq1  TTGCCG-TGGA-GCGGTCTCTGGGTGGCCGT--GCCAGC-AGGC-TGTCG  139
      |||||| |||| |||||||||||||||||||   ||||| |||| |||| 
seq2  TTGCCGTTGGAGGCGGTCTCTGGGTGGCCGTTGCCCAGCAAGGCTTGTC-  144

seq1  GTCGGGT--CAGCTGTGTGT--CCCCTCCCAGCTGCTCC-AGAA--GGTT  182
      |||||||   ||||||||||  ||||||||||||||||| ||||  ||||
seq2  GTCGGGTTCAAGCTGTGTGTTCCCCCTCCCAGCTGCTCCAAGAAAGGGTT  194

seq1  CTGTCACCTTCATT-GCTTCATT-CCTG-TTCCCAT--CCAAAAGAAAGC  227
      ||||||| |||||| |||||||| |||| |||||||  | ||||||||||
seq2  CTGTCACTTTCATTGGCTTCATTCCCTGTTTCCCATTCCAAAAAGAAAGC  244

seq1  TGGC-AAAAGCTGTAATG-CCCCAGAGACTTCATCTGCACCTCAGCCATC  275
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGGCAAAAAGCTGTAATGCCCCCAGAGACTTCATCTGCACCTCAGCCATC  294

seq1  TGTCTCGGTTTCAAA--CAAGTGGCATGGAAGAGATGGAGCATTC-AAGT  322
      |||||||||||||||   ||||||||||||||||||||||||||| ||||
seq2  TGTCTCGGTTTCAAAACAAAGTGGCATGGAAGAGATGGAGCATTCAAAGT  344

seq1  TACAGTACCGAGGGCTTCGTGTCAGAGGCAGGCGTTGCTGACGGCCCGAG  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTACCGAGGGCTTCGTGTCAGAGGCAGGCGTTGCTGACGGCCCGAG  394

seq1  TCTGCTAGGATAAGCAGCAGCGTCCTCTCGCAGAGGTCAGACTGATTGCC  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAGGATAAGCAGCAGCGTCCTCTCGCAGAGGTCAGACTGATTGCC  444

seq1  AGCTGAGAACTGATGAGACGTTC-AGGGCTAGTTTCTAAGTTTTCCTAGT  471
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCTGAGAACTGATGAGACGTTCAAGGGCTAGTTTCTAAGTTTTCCTAGT  494

seq1  GATTTGGATACCAACTCTGTGAAGTATTTATTATGTTTCTGAGAGCAACC  521
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGATACCAACTCTGTGAAGTATTTATTATGTTTCTGAGAGCAACC  544

seq1  TTTAATTCTTCCTGTAGTTTTGAAAGCGTGATCAGTTGTAGCCTTTGATT  571
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCTTCCTGTAGTTTTGAAAGCGTGATCAGTTGTAGCCTTTGATT  594

seq1  GGAACATAGTGGCAATAGGAGACTGTTTGAAAATCAATCTTGAAGTGTTG  621
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATAGTGGCAATAGGAGACTGTTTGAAAATCAATCTTGAAGTGTTG  644

seq1  GTATTTATTTCAAATGAATGTCTGAAAAATAGAAAAAACATTTGGGGTAC  671
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTTCAAATGAATGTCTGAAAAATAGAAAAAACATTTGGGGTAC  694

seq1  GGGTATGTGTTTTCTCGTGGCTTCAAACATGAGCGGACAGGCCCCTCTCT  721
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGTGTTTTCTCGTGGCTTCAAACATGAGCGGACAGGCCCCTCTCT  744

seq1  CTCTCTCCCTTTGTCCCGGAAGCTCCATGCACAAGGCACTTGCTTTTTAA  771
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCTTTGTCCCGGAAGCTCCATGCACAAGGCACTTGCTTTTTAA  794

seq1  GTCTTGGTTGCCAGTTTTTGTTTTCCTTTTGTTTTATATACTTCAGGTGG  821
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTTGCCAGTTTTTGTTTTCCTTTTGTTTTATATACTTCAGGTGG  844

seq1  GTTTTTGTTTTGTTTTGTCTTTTTCTTTCTTTTTAAACTTAGCATCAGCA  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTGTTTTGTCTTTTTCTTTCTTTTTAAACTTAGCATCAGCA  894

seq1  TACGTATTTTGCCTCTCTTCTGGGACACATCGAAATTGCAACAGTGGGGC  921
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTATTTTGCCTCTCTTCTGGGACACATCGAAATTGCAACAGTGGGGC  944

seq1  TGCTGCTCTTTCAACTTCACATGTCTGACCTGGTTTTTAACATAGCAAGT  971
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTCTTTCAACTTCACATGTCTGACCTGGTTTTTAACATAGCAAGT  994

seq1  ATGAACTTATTTGTAGAGAAGCTAATAAAAGTTGCATGCCTGACTGAGAT  1021
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTATTTGTAGAGAAGCTAATAAAAGTTGCATGCCTGACTGAGAT  1044

seq1  AAATGTGTACTGAGTTCAGCGCAAGTGCAGGGATCGCCAAAGGATTGGCT  1071
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTACTGAGTTCAGCGCAAGTGCAGGGATCGCCAAAGGATTGGCT  1094

seq1  TTGTTTCCTTGTTTCAGTAATTGGAACTCCTGCTGTCAGTCTCTAAAGAA  1121
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTTGTTTCAGTAATTGGAACTCCTGCTGTCAGTCTCTAAAGAA  1144

seq1  TTC  1124
      |||
seq2  TTC  1147