BAC Information

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BAC

Clone NameB6Ng01-282J09
Chromosome3 (Build37)
Map Location 120,015,724 - 120,177,930
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282J09.bB6Ng01-282J09.g
ACCGA081764GA081765
length9971,093
definitionB6Ng01-282J09.b B6Ng01-282J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,015,724 - 120,016,336)(120,176,853 - 120,177,930)
sequence
gaattctgacgggaagacatacaatgaagcatattactgaaagataactt
ctacattttcagaaaggcaaattttatttataaatactatctatgaattt
aagaaattctaccatttttgtttattttttgtttattattattattatta
ttattattatgtattttcttcatttacatttccaataatatccaaaaagt
ccccctacccacccactcctacttcttgactctggcattcccctgtactg
aggcatataaagtttgcaagaccaatgggcctctctttctactgatggct
gactaggccattttctgatacatatgcagctagagactcgagctccaggg
agtacagggtagttcatatttttgttccacctatagggttgcagatccct
ttagctccttgggtgctttctctagctcctccattgggggccctgggatc
catccaatagctgactgtgagcctccacttctgtgtttgctaggccctgg
catagcctcaaaagagacagctatatcagggtcctttcagcaaaaccttg
ctagtgtatgcaatgatgtcagcatttggaggctgattatgggatggatc
ccggggtatggcagtctctagatggtccatccttttgtctccgctccaaa
ctttgtctctgtaactccttccatgggtgttttgttcccaattctaagaa
ggggcaaagtgtccacactttggtcttcgttcttcttgagtttcatgtgt
ttcacaaattgtatcttatatcttgggtattctaagattctgggctaata
tccaattatcagtgagtacatatcacgtgagttcttttgtgattgggtta
cctcactcaggatgatgccctccaggcccatccgtttgcctaggaatttc
ataaattcattctttttaatagctgagtagtactccattgtgtaatgtgc
cacatgttctgtatccattcctctgttgaggggcaactgggttattt

gaattcagtgcattcttaggacattggagagagccctaaggtttgaggca
taaacattttcttagctccttttctgtatgtgagtgttcctatcagtttc
aagaccataaccttgttctgagaaggactctggcctggtgtttacacaac
agtgctccctagctaactgtgaatttcagggcaaaggtcccaccaagcac
acatattatttcccatttttcttgtcattttcttcatttctgtttttggt
gagcaggcctagaaggtttagttcaaggtaatgaagctgagtataaggag
acctgtctgccatacagagtcacacagttgatcatgtacacaggatttta
gtcatggggtcgcatgccacacattccaacttgcaattgcaagtagtcca
caatcatctttatttccacatgtttttcacagaatatgtaacttttgttg
ttgttgttcttgaatttactaccttcatgaaacaaaatagactgagttaa
aaatcctaacattcaggtgtcttatattaaaacaaataaggcaataatta
ttctttaccaaatcctttggcttcaaggaaacatattttaaataatttaa
tgcttgaagtatattttacccaaagcaaatttcttccgaaattaagacca
ttccttgatatgcaattggttgaatttgattcaaatatcttctgcattag
ctgagtacacactttatgctggtatactttctcttgtatgtggtatttta
ttgatttactaagtagaagctgaagtctttgtggtatggcgatcaaacaa
ttctgggaatgcatctctacatttatctccaaaaatgtcttttttttttt
ttccattcaactttctgagtccacagtgctatttctcaaaaaaaaaattt
ttttttttttccttaagaggaccacatttctgtgcatactgatgtctgtg
ggcttgaattaggtttcatagagcctagaactcccagaagaaccctgaaa
gaaggaagaaaaaaaaaaaaaggcccaggattccaggattgggtactccg
taaccaaggaatacacccagcctgctttgtttgaagcagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120015724_120016336
seq2: B6Ng01-282J09.b_46_658

seq1  GAATTCTGACGGGAAGACATACAATGAAGCATATTACTGAAAGATAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACGGGAAGACATACAATGAAGCATATTACTGAAAGATAACTT  50

seq1  CTACATTTTCAGAAAGGCAAATTTTATTTATAAATACTATCTATGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTTCAGAAAGGCAAATTTTATTTATAAATACTATCTATGAATTT  100

seq1  AAGAAATTCTACCATTTTTGTTTATTTTTTGTTTATTATTATTATTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTCTACCATTTTTGTTTATTTTTTGTTTATTATTATTATTATTA  150

seq1  TTATTATTATGTATTTTCTTCATTTACATTTCCAATAATATCCAAAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATGTATTTTCTTCATTTACATTTCCAATAATATCCAAAAAGT  200

seq1  CCCCCTACCCACCCACTCCTACTTCTTGACTCTGGCATTCCCCTGTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTACCCACCCACTCCTACTTCTTGACTCTGGCATTCCCCTGTACTG  250

seq1  AGGCATATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCTACTGATGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCTACTGATGGCT  300

seq1  GACTAGGCCATTTTCTGATACATATGCAGCTAGAGACTCGAGCTCCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGCCATTTTCTGATACATATGCAGCTAGAGACTCGAGCTCCAGGG  350

seq1  AGTACAGGGTAGTTCATATTTTTGTTCCACCTATAGGGTTGCAGATCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGGTAGTTCATATTTTTGTTCCACCTATAGGGTTGCAGATCCCT  400

seq1  TTAGCTCCTTGGGTGCTTTCTCTAGCTCCTCCATTGGGGGCCCTGGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCCTTGGGTGCTTTCTCTAGCTCCTCCATTGGGGGCCCTGGGATC  450

seq1  CATCCAATAGCTGACTGTGAGCCTCCACTTCTGTGTTTGCTAGGCCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAATAGCTGACTGTGAGCCTCCACTTCTGTGTTTGCTAGGCCCTGG  500

seq1  CATAGCCTCAAAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAACCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCTCAAAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAACCTTG  550

seq1  CTAGTGTATGCAATGATGTCAGCATTTGGAGGCTGATTATGGGATGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTATGCAATGATGTCAGCATTTGGAGGCTGATTATGGGATGGATC  600

seq1  CCGGGGTATGGCA  613
      |||||||||||||
seq2  CCGGGGTATGGCA  613


seq1: chr3_120176853_120177930
seq2: B6Ng01-282J09.g_66_1158 (reverse)

seq1  TCTTCTGCTTCCAAACAAGACAGGCT-GGTGTA-TCCTTGG-TACGGAGT  47
      |||||||||| |||||||  |||||| |||||| ||||||| ||||||| 
seq2  TCTTCTGCTT-CAAACAAAGCAGGCTGGGTGTATTCCTTGGTTACGGAG-  48

seq1  TACCCAATCCT-GAATCCTGG--CTTTTTTTTTTTTTC-TCTTTCTTTCA  93
      ||||||||||| |||||||||  ||||||||||||||| || ||||||||
seq2  TACCCAATCCTGGAATCCTGGGCCTTTTTTTTTTTTTCTTCCTTCTTTCA  98

seq1  -GGTTC-TCT-GGAG-TCTA-GCTCTTATGAAAACCTAATTCAAG-CCAC  137
       ||||| ||| |||| |||| |||| |||| |||||||||||||| ||||
seq2  GGGTTCTTCTGGGAGTTCTAGGCTC-TATG-AAACCTAATTCAAGCCCAC  146

seq1  AGACATCAGTATGCACAGAAATGT-GTCCTCTTAAGGAAAAAAAAAAA--  184
      |||||||||||||||||||||||| |||||||||||||||||||||||  
seq2  AGACATCAGTATGCACAGAAATGTGGTCCTCTTAAGGAAAAAAAAAAAAA  196

seq1  -TTTTTTTTTGAG-AATAGCACTGTGGACTCAGAAAGTTGAATGG-AAAA  231
       |||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  TTTTTTTTTTGAGAAATAGCACTGTGGACTCAGAAAGTTGAATGGAAAAA  246

seq1  AAAAAAAAGACATTTTTGGAGATAAATGTAGAGATGCATTCCCAGAATTG  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGACATTTTTGGAGATAAATGTAGAGATGCATTCCCAGAATTG  296

seq1  TTTGATCGCCATACCACAAAGACTTCAGCTTCTACTTAGTAAATCAATAA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCGCCATACCACAAAGACTTCAGCTTCTACTTAGTAAATCAATAA  346

seq1  AATACCACATACAAGAGAAAGTATACCAGCATAAAGTGTGTACTCAGCTA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCACATACAAGAGAAAGTATACCAGCATAAAGTGTGTACTCAGCTA  396

seq1  ATGCAGAAGATATTTGAATCAAATTCAACCAATTGCATATCAAGGAATGG  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAGATATTTGAATCAAATTCAACCAATTGCATATCAAGGAATGG  446

seq1  TCTTAATTTCGGAAGAAATTTGCTTTGGGTAAAATATACTTCAAGCATTA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTCGGAAGAAATTTGCTTTGGGTAAAATATACTTCAAGCATTA  496

seq1  AATTATTTAAAATATGTTTCCTTGAAGCCAAAGGATTTGGTAAAGAATAA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTAAAATATGTTTCCTTGAAGCCAAAGGATTTGGTAAAGAATAA  546

seq1  TTATTGCCTTATTTGTTTTAATATAAGACACCTGAATGTTAGGATTTTTA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCCTTATTTGTTTTAATATAAGACACCTGAATGTTAGGATTTTTA  596

seq1  ACTCAGTCTATTTTGTTTCATGAAGGTAGTAAATTCAAGAACAACAACAA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCTATTTTGTTTCATGAAGGTAGTAAATTCAAGAACAACAACAA  646

seq1  CAAAAGTTACATATTCTGTGAAAAACATGTGGAAATAAAGATGATTGTGG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTACATATTCTGTGAAAAACATGTGGAAATAAAGATGATTGTGG  696

seq1  ACTACTTGCAATTGCAAGTTGGAATGTGTGGCATGCGACCCCATGACTAA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTGCAATTGCAAGTTGGAATGTGTGGCATGCGACCCCATGACTAA  746

seq1  AATCCTGTGTACATGATCAACTGTGTGACTCTGTATGGCAGACAGGTCTC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTGTACATGATCAACTGTGTGACTCTGTATGGCAGACAGGTCTC  796

seq1  CTTATACTCAGCTTCATTACCTTGAACTAAACCTTCTAGGCCTGCTCACC  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTCAGCTTCATTACCTTGAACTAAACCTTCTAGGCCTGCTCACC  846

seq1  AAAAACAGAAATGAAGAAAATGACAAGAAAAATGGGAAATAATATGTGTG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGAAATGAAGAAAATGACAAGAAAAATGGGAAATAATATGTGTG  896

seq1  CTTGGTGGGACCTTTGCCCTGAAATTCACAGTTAGCTAGGGAGCACTGTT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGGACCTTTGCCCTGAAATTCACAGTTAGCTAGGGAGCACTGTT  946

seq1  GTGTAAACACCAGGCCAGAGTCCTTCTCAGAACAAGGTTATGGTCTTGAA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAACACCAGGCCAGAGTCCTTCTCAGAACAAGGTTATGGTCTTGAA  996

seq1  ACTGATAGGAACACTCACATACAGAAAAGGAGCTAAGAAAATGTTTATGC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAGGAACACTCACATACAGAAAAGGAGCTAAGAAAATGTTTATGC  1046

seq1  CTCAAACCTTAGGGCTCTCTCCAATGTCCTAAGAATGCACTGAATTC  1078
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCTTAGGGCTCTCTCCAATGTCCTAAGAATGCACTGAATTC  1093


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