BAC Information

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BAC

Clone NameB6Ng01-282K17
Chromosome3 (Build37)
Map Location 113,922,224 - 113,923,336
singlet/doubletsinglet
Overlap geneCol11a1
Upstream geneOTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282K17.bB6Ng01-282K17.g
ACCGA081826GA081827
length1,1711,117
definitionB6Ng01-282K17.b B6Ng01-282K17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtttaggaactctccctgtgtgacaatgagttcaaggctcttt
tccattttctcttctattatattgtatatttggttttatgttgaggtcct
tgatcctcttggaattgagctttgtgcaaggtaacaaatatgggtctatt
ttcattcttctacatacagacagtcagtaagaccagcaccatttattgga
gatgctttctcttttccattgtatatttttggagtctttgttacagatca
attgaccataagtgtgtggttttatttctgggtctttaattctaatccat
tgatcaacatgtctgtctctgtaccagtaccatgcagtttttatcactat
tgctctgtagtaacgcttgaagtcagggatagtgattgcctcagctgttc
ttttattgttaagaattgttttcgctttgctggtttgtttgttttgttgt
attgttttgtttttgccctttcagatgaatttgagaattgctctttccat
gtctctgaagacttgtgttgggactttgatggggattgcaatgaatctat
agattgcctttggtaggatggtcatttttactatgttaattctgccaatc
catgagcatgagagatatcttcattttctgagatcttatttgatttctta
cttgagagacttgacagttgtttatcaggtggagaaattatctggtagaa
ctttgggggacccttatgtatactatcatgtcatctacaatagtggtgct
ttcattatttttttctttacaatttgtatctactgatctctctctctctc
tctctctctctctctctctctctctctctctcatcttattgttctagcta
acactttcgagtactatattgaatagatatggggagagtgggaatccttg
tgttgtcccagactgcagtgggattgcttcaagttgtctcattaatttga
tattggctgtggtttgtagtaaattgctttttttatgattaagtattggc
ccttgatccttgatctctcaatacttaacattgaaaggcctgtgttgtat
ttgtcaaatggcttttctgccatggtaggggagatgaacaagtgaatttg
tttctgttcagtcttggtcatgaatgccattacgctgatagaattttcca
agttataaacacaccccttgc
gaattcttctctggatggtcaagtatgacaatcaaaagtacttttgaaca
caagagtgaattgcaacctgtttaagaaagaaaatgaccaatccaggtag
acaagacttgatttattgataaaattcatatctccttcctccaaaggaca
tttacaaacttggtttcagaaataaagaaattctgaattacaaatgttca
tttttaaatgtcaagattacagattatattctttgagataaattatcagc
tgataagtgttccagtggaaactggtatcaattaatttaacacttcatat
aagaaattataataaaacatttattttcaagtcttacatatattacttaa
aatagatacaaaattcagttggtgattttaaaattgtattgctagttcaa
ggtatgtaaaagaaaatacctaagtggaaaaaaagagaagggttgattgt
cttgagcaaatatgacttttgaaacagctcaccctatgtattttttagct
actaggttggtcaaatgttgaaaataattattttaaaacaaaggaactgt
atttgttgggcaagtaaaataatatttgcgactattattactatgccact
ttaacagttcattgctttaacctaacattgcacaaatttataaataattg
cttattttccatctttagtattagttggcattactgaagcactctgagga
caatgaagaagattacgtagagaaataattgtacataaagttattttctg
ggtggatgttaaagcagtttctcatacatactttcctgtccaaaaatata
acttttcttgttccccatatatacaagtatttggtgaaatctggatttct
gagaagaaaatattcgaggtatagcactgaattaattattaaaatgcatt
gatactttctggctgaaacgcaacaagttaccgttagcagagaagggacg
attggtgtgtgatcctgaaagtcttagattgaacaccggtgaaatttgtt
cagtgacatcaaataactgaaagtcttcaaacatcaacaaataacacgca
ttttattatattcaggaaagcaattaggagtcagcagaaaatacaccttg
gagtttgtattcaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113922224_113923336
seq2: B6Ng01-282K17.g_68_1184 (reverse)

seq1  TATTTGTGATACAAAACTCAAGTTGTA-TTTCTGCTGACT-CTAATTGCC  48
      ||||||  |||||||   |||| |||| |||||||||||| ||||||| |
seq2  TATTTG-AATACAAACTCCAAGGTGTATTTTCTGCTGACTCCTAATTG-C  48

seq1  TTTCCTTGATTAATAATAAAATGCCTTTGTATATGTTGATG-TTGAAGAC  97
      ||||||  ||  |||||||||||| | | ||| |||||||| ||||||||
seq2  TTTCCTGAAT--ATAATAAAATGCGTGT-TATTTGTTGATGTTTGAAGAC  95

seq1  -TTCAGTTATTTGATGTCACTG-ACAAATTTCA-CGGTGGTCAAATCT-A  143
       ||||||||||||||||||||| |||||||||| ||||| || ||||| |
seq2  TTTCAGTTATTTGATGTCACTGAACAAATTTCACCGGTGTTC-AATCTAA  144

seq1  GACTTTCAGGATCACACACCAATCGTCCCTTCTCTGCTAACCGTAACTTG  193
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACTTTCAGGATCACACACCAATCGTCCCTTCTCTGCTAACGGTAACTTG  194

seq1  TTGCGTTTCAGCCAG-AAGTATC-ATGCATTTTAATAATTAATTCAGTGC  241
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  TTGCGTTTCAGCCAGAAAGTATCAATGCATTTTAATAATTAATTCAGTGC  244

seq1  TATACCTCGAATATTTTCTTCTCAG-AATCCAGATTTCACCAAATACTTG  290
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATACCTCGAATATTTTCTTCTCAGAAATCCAGATTTCACCAAATACTTG  294

seq1  TATATATGGGGAACAAGAAAAGTTATATTTTTGGACAGGAAAGTATGTAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGGGGAACAAGAAAAGTTATATTTTTGGACAGGAAAGTATGTAT  344

seq1  GAGAAACTGCTTTAACATCCACCCAGAAAATAACTTTATGTACAATTATT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTGCTTTAACATCCACCCAGAAAATAACTTTATGTACAATTATT  394

seq1  TCTCTACGTAATCTTCTTCATTGTCCTCAGAGTGCTTCAGTAATGCCAAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACGTAATCTTCTTCATTGTCCTCAGAGTGCTTCAGTAATGCCAAC  444

seq1  TAATACTAAAGATGGAAAATAAGCAATTATTTATAAATTTGTGCAATGTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTAAAGATGGAAAATAAGCAATTATTTATAAATTTGTGCAATGTT  494

seq1  AGGTTAAAGCAATGAACTGTTAAAGTGGCATAGTAATAATAGTCGCAAAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAAGCAATGAACTGTTAAAGTGGCATAGTAATAATAGTCGCAAAT  544

seq1  ATTATTTTACTTGCCCAACAAATACAGTTCCTTTGTTTTAAAATAATTAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTACTTGCCCAACAAATACAGTTCCTTTGTTTTAAAATAATTAT  594

seq1  TTTCAACATTTGACCAACCTAGTAGCTAAAAAATACATAGGGTGAGCTGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACATTTGACCAACCTAGTAGCTAAAAAATACATAGGGTGAGCTGT  644

seq1  TTCAAAAGTCATATTTGCTCAAGACAATCAACCCTTCTCTTTTTTTCCAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGTCATATTTGCTCAAGACAATCAACCCTTCTCTTTTTTTCCAC  694

seq1  TTAGGTATTTTCTTTTACATACCTTGAACTAGCAATACAATTTTAAAATC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTATTTTCTTTTACATACCTTGAACTAGCAATACAATTTTAAAATC  744

seq1  ACCAACTGAATTTTGTATCTATTTTAAGTAATATATGTAAGACTTGAAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTGAATTTTGTATCTATTTTAAGTAATATATGTAAGACTTGAAAA  794

seq1  TAAATGTTTTATTATAATTTCTTATATGAAGTGTTAAATTAATTGATACC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTTTATTATAATTTCTTATATGAAGTGTTAAATTAATTGATACC  844

seq1  AGTTTCCACTGGAACACTTATCAGCTGATAATTTATCTCAAAGAATATAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCACTGGAACACTTATCAGCTGATAATTTATCTCAAAGAATATAA  894

seq1  TCTGTAATCTTGACATTTAAAAATGAACATTTGTAATTCAGAATTTCTTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATCTTGACATTTAAAAATGAACATTTGTAATTCAGAATTTCTTT  944

seq1  ATTTCTGAAACCAAGTTTGTAAATGTCCTTTGGAGGAAGGAGATATGAAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAAACCAAGTTTGTAAATGTCCTTTGGAGGAAGGAGATATGAAT  994

seq1  TTTATCAATAAATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAATAAATCAAGTCTTGTCTACCTGGATTGGTCATTTTCTTTCTT  1044

seq1  AAACAGGTTGCAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTTGCAATTCACTCTTGTGTTCAAAAGTACTTTTGATTGTCATA  1094

seq1  CTTGACCATCCAGAGAAGAATTC  1113
      |||||||||||||||||||||||
seq2  CTTGACCATCCAGAGAAGAATTC  1117