BAC Information

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BAC

Clone NameB6Ng01-283B01
Chromosome3 (Build37)
Map Location 38,962,599 - 39,128,432
singlet/doubletdoublet
Overlap geneLOC100041432
Upstream geneEG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
Downstream geneLOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283B01.bB6Ng01-283B01.g
ACCGA082118GA082119
length1,0821,096
definitionB6Ng01-283B01.b B6Ng01-283B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,962,599 - 38,963,685)(39,127,326 - 39,128,432)
sequence
gaattcaccatttttaaggttgaagattgatgattacatgctgtgactta
gaatcccaaacaccctgaaagcacatttttatactatctggaaaacaaat
ataaatattcacaaggaagaaggggtaatttttttctgtttccaatttaa
ggtttgggttttctacacctcagtggacattctaaatgccagtttttaag
catatcttaaaaacatctttctgtggatctttaagtgtcagaaacccact
gctagtttctaacacttttaattattagaaagctcttgtccctttcccaa
tcttttggtttctctctgaccaaggatttttatttctgtatatcacatca
ctctcttctataatcactaaattgtcttacctacagtgttgtgtggtctt
gaagactagattggtcaacatgtgtgaaattcttgatggggtagagatat
gttagcttctaaaatttactattattagatattgcaatgtgattaactct
tacacgcgttctcgcgaccggccaggaagaacgcaacaaaccggaatctt
ctgcggcaaaagctttattggttacatcttcaggagccagagagtaagag
caagagagcaagagagcaagagcaagagcaagagcaagagagagaatggc
gaaaccccgtcccttttaaggagaattatcctccgcctaggacgtgtcac
tccctgattggctgcagcccatcggccgagttgtcgtcacggggaaggca
gagcacatgggctggagaattacccttggcacatgcgcagattatttgtt
taccacttagaacacaggatgtcagcgccatcttgcaacggcgaatgtga
gggtggcttcctacaattaacaccatttttttttccaaacatgcacagtg
atctgacatctgctttatattctggaatgaaagtgctaagaagtgtctgt
gaccacaatacacagaaccctgtgttggacattgtcttagtcaggtttct
attcctgcacaaaacatcatgacagaagcaggtgggagaacgggttattc
aagctaccacttccatactgctgttcatcacc

gaattcacaaaggtaacaaacaaactattttatataagaggtgttttata
attttaaaaaaagctaataaagacagtatagaaatttctagaaattaagg
atttgggaagttttcaaagctgaagacaatattaacttttattgtatttg
aaaagtgtttggtaaaatgagaggagtaaatgtgataatattgaataaaa
caacttgtaagttctatggtggaaaatcacctttttagtccagaatacca
tcctccagtgttaggtatttactttttaattcatttcaaaattaaagaca
tatgtttttaaatcaaggaggatatagggaaatattgcatttaatctaat
gtgaaccctcatttacgtataaaattaagtgtaagaacatatagacctgg
aaagggcgttccaagcctggtttgtctatgtcagcaaacaatttagcaca
tctggtccaagattttccaaacagtcatttatgttcttactaaccttagc
aagactgtcaattctattgtcataaagttgttccaaatattaactttcta
caattctaaaggatttgaaatcctagaaacctagacagcttgatatgaat
ttttgaataatgatattaaacgtataaggtgaaggattataatggattgt
ctttaaatttcctttagttaacatatggcagaaggaatgggttaaggaga
gtcaataaaaacacaatgaagaactctcagaaaataagagaaactgagtg
cccaataatgcaccccccacctccccattggagttctgtgcagtcatacc
ccaccagttcagctcccttggatgtagagagcagtgaccatgagaaagag
catgtgggcccagcctggtatgctatgcatgtgctaagacaggctactgc
ttaataactaagtgggaaacaacctcaaattacctctatgtacatagtat
tcatgtgcacactttgtttttccattttcaattcttctgaatacctagag
ccaatttggctaaaataagggatcatgcctgagccaaaaatcatatggtg
taagggctctcctagttagttcatcaggctacattggttgtgttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38962599_38963685
seq2: B6Ng01-283B01.b_49_1130

seq1  GAATTCACCATTTTTAAGGTTGAAGATTGATGATTACATGCTGTGACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTTTTAAGGTTGAAGATTGATGATTACATGCTGTGACTTA  50

seq1  GAATCCCAAACACCCTGAAAGCACATTTTTATACTATCTGGAAAACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCAAACACCCTGAAAGCACATTTTTATACTATCTGGAAAACAAAT  100

seq1  ATAAATATTCACAAGGAAGAAGGGGTAATTTTTTTCTGTTTCCAATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATTCACAAGGAAGAAGGGGTAATTTTTTTCTGTTTCCAATTTAA  150

seq1  GGTTTGGGTTTTCTACACCTCAGTGGACATTCTAAATGCCAGTTTTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGGTTTTCTACACCTCAGTGGACATTCTAAATGCCAGTTTTTAAG  200

seq1  CATATCTTAAAAACATCTTTCTGTGGATCTTTAAGTGTCAGAAACCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTAAAAACATCTTTCTGTGGATCTTTAAGTGTCAGAAACCCACT  250

seq1  GCTAGTTTCTAACACTTTTAATTATTAGAAAGCTCTTGTCCCTTTCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTCTAACACTTTTAATTATTAGAAAGCTCTTGTCCCTTTCCCAA  300

seq1  TCTTTTGGTTTCTCTCTGACCAAGGATTTTTATTTCTGTATATCACATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGTTTCTCTCTGACCAAGGATTTTTATTTCTGTATATCACATCA  350

seq1  CTCTCTTCTATAATCACTAAATTGTCTTACCTACAGTGTTGTGTGGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTATAATCACTAAATTGTCTTACCTACAGTGTTGTGTGGTCTT  400

seq1  GAAGACTAGATTGGTCAACATGTGTGAAATTCTTGATGGGGTAGAGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTAGATTGGTCAACATGTGTGAAATTCTTGATGGGGTAGAGATAT  450

seq1  GTTAGCTTCTAAAATTTACTATTATTAGATATTGCAATGTGATTAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTCTAAAATTTACTATTATTAGATATTGCAATGTGATTAACTCT  500

seq1  TACACGCGTTCTCGCGACCGGCCAGGAAGAACGCAACAAACCGGAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCGTTCTCGCGACCGGCCAGGAAGAACGCAACAAACCGGAATCTT  550

seq1  CTGCGGCAAAAGCTTTATTGGTTACATCTTCAGGAGCCAGAGAGTAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGCAAAAGCTTTATTGGTTACATCTTCAGGAGCCAGAGAGTAAGAG  600

seq1  CAAGAGAGCAAGAGAGCAAGAGCAAGAGCAAGAGCAAGAGAGAGAATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGCAAGAGAGCAAGAGCAAGAGCAAGAGCAAGAGAGAGAATGGC  650

seq1  GAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTGTCAC  700

seq1  TCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCA  750

seq1  GAGCACATGGGCTGGAGAATTACCCTTGGCACATGCGCAGATTATTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACATGGGCTGGAGAATTACCCTTGGCACATGCGCAGATTATTTGTT  800

seq1  TACCACTTAGAACACAGGATGTCAGCGCCATCTTGCAACGGCGAATGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTAGAACACAGGATGTCAGCGCCATCTTGCAACGGCGAATGTGA  850

seq1  GGGTGGCTTCCTACAATTAACACCATTTTTTTTTCCAAACATGCACAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTTCCTACAATTAACACCATTTTTTTTTCCAAACATGCACAGTG  900

seq1  ATCTGACATCTGCTTTATATTCTGGAATGAAAGTGCTAAGAAGTGTCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACATCTGCTTTATATTCTGGAATGAAAGTGCTAAGAAGTGTCTGT  950

seq1  GACCACAATACACAGAACCCTGTGTTGGACATTGTCTTAGTCAGGGTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GACCACAATACACAGAACCCTGTGTTGGACATTGTCTTAGTCA-GGTTTC  999

seq1  TATTCCTGCAC-AAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGG  1049
      ||||||||||| ||||||||||||  ||||||| ||  |||||  || ||
seq2  TATTCCTGCACAAAACATCATGAC--AGAAGCAGGT--GGGAG--AACGG  1043

seq1  TTTATTC-AGCTTACACTTCCATACTGCTGTTCATCACC  1087
       |||||| ||||  |||||||||||||||||||||||||
seq2  GTTATTCAAGCTACCACTTCCATACTGCTGTTCATCACC  1082


seq1: chr3_39127326_39128432
seq2: B6Ng01-283B01.g_63_1158 (reverse)

seq1  TGAACACAAACAAATGTAGCTTGATTGACTTACTA-GAGAGCCCTTTACC  49
      ||||||| ||| |||||||| ||||  ||| |||| ||||||||||   |
seq2  TGAACAC-AACCAATGTAGCCTGATGAACTAACTAGGAGAGCCCTT--AC  47

seq1  ACCTTAATGATTTTTGGCTCAGGCATGATCCCTAATTTTTAGCCAAATTG  99
      ||| | ||||||||||||||||||||||||||| | ||||||||||||||
seq2  ACCAT-ATGATTTTTGGCTCAGGCATGATCCCTTA-TTTTAGCCAAATTG  95

seq1  GCTCTAGTTATTTCAGAAGAATTTGAAAAATTGGAAAAAACAAAGTGTGC  149
      ||||||| || |||||||||| |||||||  ||| |||||||||||||||
seq2  GCTCTAGGTA-TTCAGAAGAA-TTGAAAA--TGG-AAAAACAAAGTGTGC  140

seq1  ACATGAAATACTATGTACATAAGAGGTAATTTGAGGTTGTTTCCCACTTA  199
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  ACATG-AATACTATGTACAT-AGAGGTAATTTGAGGTTGTTTCCCACTTA  188

seq1  GTTATTAAGCAGTAGCCTGTCTTAGCACATGCATAGCATACCAGGCTGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAAGCAGTAGCCTGTCTTAGCACATGCATAGCATACCAGGCTGGG  238

seq1  -CCACATGCTCTTTCTCATGGTCACCTGCTCTCTACATCCAAGGGAGCTG  298
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCACATGCTCTTTCTCATGGTCA-CTGCTCTCTACATCCAAGGGAGCTG  287

seq1  AACTGGTGGGGTATGACTGCACAGAACTCCAATGGGGAGGTGGGGGGTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTGGGGTATGACTGCACAGAACTCCAATGGGGAGGTGGGGGGTGC  337

seq1  ATTATTGGGCACTCAGTTTCTCTTATTTTCTGAGAGTTCTTCATTGTGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGGCACTCAGTTTCTCTTATTTTCTGAGAGTTCTTCATTGTGTT  387

seq1  TTTATTGACTCTCCTTAACCCATTCCTTCTGCCATATGTTAACTAAAGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGACTCTCCTTAACCCATTCCTTCTGCCATATGTTAACTAAAGGA  437

seq1  AATTTAAAGACAATCCATTATAATCCTTCACCTTATACGTTTAATATCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGACAATCCATTATAATCCTTCACCTTATACGTTTAATATCAT  487

seq1  TATTCAAAAATTCATATCAAGCTGTCTAGGTTTCTAGGATTTCAAATCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAAATTCATATCAAGCTGTCTAGGTTTCTAGGATTTCAAATCCT  537

seq1  TTAGAATTGTAGAAAGTTAATATTTGGAACAACTTTATGACAATAGAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTGTAGAAAGTTAATATTTGGAACAACTTTATGACAATAGAATT  587

seq1  GACAGTCTTGCTAAGGTTAGTAAGAACATAAATGACTGTTTGGAAAATCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTTGCTAAGGTTAGTAAGAACATAAATGACTGTTTGGAAAATCT  637

seq1  TGGACCAGATGTGCTAAATTGTTTGCTGACATAGACAAACCAGGCTTGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAGATGTGCTAAATTGTTTGCTGACATAGACAAACCAGGCTTGGA  687

seq1  ACGCCCTTTCCAGGTCTATATGTTCTTACACTTAATTTTATACGTAAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCTTTCCAGGTCTATATGTTCTTACACTTAATTTTATACGTAAATG  737

seq1  AGGGTTCACATTAGATTAAATGCAATATTTCCCTATATCCTCCTTGATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCACATTAGATTAAATGCAATATTTCCCTATATCCTCCTTGATTT  787

seq1  AAAAACATATGTCTTTAATTTTGAAATGAATTAAAAAGTAAATACCTAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATATGTCTTTAATTTTGAAATGAATTAAAAAGTAAATACCTAAC  837

seq1  ACTGGAGGATGGTATTCTGGACTAAAAAGGTGATTTTCCACCATAGAACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGGATGGTATTCTGGACTAAAAAGGTGATTTTCCACCATAGAACT  887

seq1  TACAAGTTGTTTTATTCAATATTATCACATTTACTCCTCTCATTTTACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTGTTTTATTCAATATTATCACATTTACTCCTCTCATTTTACCA  937

seq1  AACACTTTTCAAATACAATAAAAGTTAATATTGTCTTCAGCTTTGAAAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTTCAAATACAATAAAAGTTAATATTGTCTTCAGCTTTGAAAAC  987

seq1  TTCCCAAATCCTTAATTTCTAGAAATTTCTATACTGTCTTTATTAGCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAATCCTTAATTTCTAGAAATTTCTATACTGTCTTTATTAGCTTT  1037

seq1  TTTTAAAATTATAAAACACCTCTTATATAAAATAGTTTGTTTGTTACCTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTATAAAACACCTCTTATATAAAATAGTTTGTTTGTTACCTT  1087

seq1  TGTGAATTC  1107
      |||||||||
seq2  TGTGAATTC  1096


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