BAC Information

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BAC

Clone NameB6Ng01-283B17
Chromosome3 (Build37)11 (Build37)
Map Location 113,564,163 - 113,564,703119,624,196 - 119,625,138
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneCol11a1, LOC100043220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283B17.bB6Ng01-283B17.g
ACCGA082150GA082151
length430948
definitionB6Ng01-283B17.b B6Ng01-283B17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,564,163 - 113,564,703)(119,624,196 - 119,625,138)
sequence
tttccgtctgtaagccaggatttggcaactatggcccgtgagtcaaaccg
gtttgatctcccctctcctttttatacagcctacaagctaagaataaata
tggttttaaaatttacttacttattttaaagatattttcctctctctgta
gccctggctgtcctagaactcactctgtagaccaagctggccttgaactc
ccagagatctgcttccctttgcctccctttgctgggattaaagatgtgag
ccatcatgcccagtaagttttctgtattttaaaaggattctctctctttc
tctctctctctgtctgtctctgtgtctctttctctgtctctctgtctctc
tctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtctgtgagggtgtatttattta

gaattcattgaaagcacatgagcagcaagtgcagctcaggctttagtgag
aaatggagatagagaaaaggtcagggaagggtgcagccaataacaaaatc
tcagccaaagttctgagtgcagagctgcttagcaccccatgctgcctcca
cagtaacgagttagggtttgcagcccgagggagcctgtctcctggacctc
gtgctctctgagactctgctctgctgacggtgtcgtagcactgtagcatc
tcagcctctgagtcatctccggggcccactgtttcttaagtgtaactgaa
ggaaaagttaagatttgggtaacaatcacagctgtgatttactgagcatc
ggttgcacaactgcacgcccagcgtgtgcacagtattcccacaagcctgt
gaaggctgtgccaacactagctcttacctgcaggctgctcccaagggaac
tcgtaggcaggattcaggaactagtgcccggactcagagctgacattctg
acctccacctgtgctgcttctgtgggtactggtgacaccctccctggtgt
ctttgataccagtgacaccctccctggtgtctttggtactggtgacaccc
tccctggtgtctttggtactggtgacaccctccctggtgtctttgatacc
agtgacaccctccctggtgtctttggtactggtgacaccctccctggtgt
cttttgtactggtgacaccctccctggtgtctttgataccagtgacaccc
tccctggtgtctttggtactggtgacaccctccctggtgtcttttgtact
ggtgacaccctccctggtgtctttgacaccagtgacaccctccctggtgt
ctttgataccagtgacaccctccctggtgtctttggtactggtgacaccc
ttccctggtgtctttttgtactggtgacacccttccctggtgtcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113564163_113564703
seq2: B6Ng01-283B17.b_198_448 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACAGAGAGAGAG  50

seq1  AGAGAGAGACACATACACACACACCAAACAAATATACCAAAGAATAAATG  100
      ||| ||||| ||| | |                                 
seq2  AGACAGAGAGACAGAGA---------------------------------  67

seq1  AAAAATGTATAAGATCTGAGTTGACACTGCATGCAGCAGTATTTAAAATT  150
                ||||        ||||| | |  |||              
seq2  ----------AAGA--------GACACAG-AGACAG--------------  84

seq1  ATTTCCTTATATTCACATTTTATAGAAATGATAATTATTAGAGAATGTAA  200
                           | |||             |||||      
seq2  ---------------------ACAGA------------GAGAGA------  95

seq1  ATTTGAGTTTAAGATATGAAAAGATGATACATGATATATCATATATCATG  250
          |||            |||||        || | |            
seq2  ----GAG------------AAAGA--------GAGAGA------------  109

seq1  CCTCCCATGATATCATTTCTGAAAAGCTAATGACTAAATAACATGCATTT  300
                 ||| |||         ||      |||||          
seq2  -----------ATCCTTT---------TA------AAATA----------  123

seq1  CCCAGTCTTTGTGGCTACGTCTTGAATTTTTATGTGCAGCTATTTGTATA  350
                                          |||           
seq2  ------------------------------------CAG-----------  126

seq1  TGGCTAGATTTTATTAGTTTACATGAAGCTTGAATCATGATTTCTATAAA  400
                                                        
seq2  --------------------------------------------------  126

seq1  ATATGTTAAAATTTATGTCGTGGAGCTGGGCATGGTAGTGCATGTCTTTA  450
             |||| |||          ||||||||| | |  ||  ||||||
seq2  -------AAAACTTA----------CTGGGCATGATGGCTCACATCTTTA  159

seq1  ATCCTAGCACATGGGAGGCAGAGGCAGGCGAATTTCT--GAGTTCGAGGC  498
      |||| |||| | |||||||| ||| | ||  || |||  |||||| ||||
seq2  ATCCCAGCA-AAGGGAGGCAAAGGGAAGCAGATCTCTGGGAGTTCAAGGC  208

seq1  CAGCCTGGTCTACAGAGTGAGTTGTAGGACAGCCAGGGCTACA  541
      |||| |||||||||||||||||| |||||||||||||||||||
seq2  CAGCTTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGCTACA  251


seq1: chr11_119624196_119625138
seq2: B6Ng01-283B17.g_65_1010

seq1  GAATTCATTGAAAGCACATGAGCAGCAAGTGCAGCTCAGGCTTTAGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAAAGCACATGAGCAGCAAGTGCAGCTCAGGCTTTAGTGAG  50

seq1  AAATGGAGATAGAGAAAAGGTCAGGGAAGGGTGCAGCCAATAACAAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGATAGAGAAAAGGTCAGGGAAGGGTGCAGCCAATAACAAAATC  100

seq1  TCAGCCAAAGTTCTGAGTGCAGAGCTGCTTAGCACCCCATGCTGCCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAAAGTTCTGAGTGCAGAGCTGCTTAGCACCCCATGCTGCCTCCA  150

seq1  CAGTAACGAGTTAGGGTTTGCAGCCCGAGGGAGCCTGTCTCCTGGACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACGAGTTAGGGTTTGCAGCCCGAGGGAGCCTGTCTCCTGGACCTC  200

seq1  GTGCTCTCTGAGACTCTGCTCTGCTGACGGTGTCGTAGCACTGTAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTCTGAGACTCTGCTCTGCTGACGGTGTCGTAGCACTGTAGCATC  250

seq1  TCAGCCTCTGAGTCATCTCCGGGGCCCACTGTTTCTTAAGTGTAACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCTGAGTCATCTCCGGGGCCCACTGTTTCTTAAGTGTAACTGAA  300

seq1  GGAAAAGTTAAGATTTGGGTAACAATCACAGCTGTGATTTACTGAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTTAAGATTTGGGTAACAATCACAGCTGTGATTTACTGAGCATC  350

seq1  GGTTGCACAACTGCACGCCCAGCGTGTGCACAGTATTCCCACAAGCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCACAACTGCACGCCCAGCGTGTGCACAGTATTCCCACAAGCCTGT  400

seq1  GAAGGCTGTGCCAACACTAGCTCTTACCTGCAGGCTGCTCCCAAGGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGTGCCAACACTAGCTCTTACCTGCAGGCTGCTCCCAAGGGAAC  450

seq1  TCGTAGGCAGGATTCAGGAACTAGTGCCCGGACTCAGAGCTGACATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGGCAGGATTCAGGAACTAGTGCCCGGACTCAGAGCTGACATTCTG  500

seq1  ACCTCCACCTGTGCTGCTTCTGTGGGTACTGGTGACACCCTCCCTGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACCTGTGCTGCTTCTGTGGGTACTGGTGACACCCTCCCTGGTGT  550

seq1  CTTTGATACCAGTGACACCCTCCCTGGTGTCTTTGGTACTGGTGACACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATACCAGTGACACCCTCCCTGGTGTCTTTGGTACTGGTGACACCC  600

seq1  TCCCTGGTGTCTTTTGTACTGGTGACACCCTCCCTGGTGTCTTTGACACC  650
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  TCCCTGGTGTCTTTGGTACTGGTGACACCCTCCCTGGTGTCTTTGATACC  650

seq1  AGTGACACCCTCCCTGGTGTCTTTGATACCAGTGACACCCTCCCTGGTGT  700
      ||||||||||||||||||||||||| |||  |||||||||||||||||||
seq2  AGTGACACCCTCCCTGGTGTCTTTGGTACTGGTGACACCCTCCCTGGTGT  700

seq1  CTTTGGTACTGGTGACACCCTCCCTGGTGTCTTTTGTACTGGTGACACCC  750
      |||| |||||||||||||||||||||||||||||  |||  |||||||||
seq2  CTTTTGTACTGGTGACACCCTCCCTGGTGTCTTTGATACCAGTGACACCC  750

seq1  TCCCTGGTGTCTTTGATACCAGTGACACCCTCCCTGGTGTCTTTGGTACC  800
      ||||||||||||||| |||  ||||||||||||||||||||||| |||| 
seq2  TCCCTGGTGTCTTTGGTACTGGTGACACCCTCCCTGGTGTCTTTTGTACT  800

seq1  GGTGACACCCTCCCTGGTGTCTTTTGTACTGGTGACACCCTCCCTGGTGT  850
      ||||||||||||||||||||||||   ||  |||||||||||||||||||
seq2  GGTGACACCCTCCCTGGTGTCTTTGACACCAGTGACACCCTCCCTGGTGT  850

seq1  CTTTGATACCAGTGACACCTTCCCTGGTGTCTTTGGTACCGGTGACACCC  900
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  CTTTGATACCAGTGACACCCTCCCTGGTGTCTTTGGTACTGGTGACACCC  900

seq1  -TCCCTGGTGTC-TTTGGTACTGGTGACACCC-TCCCTGGTGTCTT  943
       ||||||||||| ||| ||||||||||||||| |||||||||||||
seq2  TTCCCTGGTGTCTTTTTGTACTGGTGACACCCTTCCCTGGTGTCTT  946


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