BAC Information

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BAC

Clone NameB6Ng01-283D09
Chromosome3 (Build37)
Map Location 96,186,854 - 96,398,230
singlet/doubletdoublet
Overlap genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl
Upstream gene4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
Downstream geneAnkrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283D09.bB6Ng01-283D09.g
ACCGA082229GA082230
length1,0031,081
definitionB6Ng01-283D09.b B6Ng01-283D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,397,236 - 96,398,230)(96,186,854 - 96,187,965)
sequence
gaattctgcagccccaggtctcagcgcgccacttcccaagcctcagttcc
ggttaagctcgctccctcctcctcccctcctcgcccgcctccgctctcgt
cgattggccaggaaaacccaccaatggagagctcggggaggcgggcctag
aacgagggctggaagaagaaaagcaaatttcaagttggcggctgcgtggg
ccctgagtgggggagggacggcaggtaaggcttcgacctggtggctctga
cccggtttggttcggtacttcccgaattagtccctcggcgccgacagcga
cgtagataacgctttctgtcagcctgttggatcagcccccttctaaatcc
ctcccctttttccccgggctctcactgctgtcttgactgtacgccggaga
cagcttgctgtcgcgcctggggacagatattaaagcaggagaggaaggtt
cattcttgtagctcagactcttctatggtaccagcttctcccgcacccat
taacgtaacattagccccctgtcaagagcctgacagattcttattaccta
tcaagtcaactgaaccgctaccctctacccaccactttcctagaccaccg
tgaagaatttattgatccccgacctgacaaagtccgattatcactattgg
aatctctttaatttttaaaattacattatttgtgtgtgtgtggggggggt
acgtacaagccatggcttacgcaaggaggtcagaggacaacttgagctag
tcagcctgtttcctggccacttggcaacacgagtatttaccatctcacga
ggctgacttttttccatccctcccatgctttttatcgggcagactctttg
ctatgtagcccatactgggcctccagtttgcattccccctgccacagtac
ccccggtgttaaggatatatgttctctttcactgtttctatttctatgaa
cggaaggttggatggacagaattggggttacttaataacattgtgttcag
taa
gaattctcgcctcccacgcgggtgacccgggttcgattcccggccaatgc
agtacctctctgttttggcccccctctctgccttcagtgtactcttttgg
gaccaggacccaagtccatcttttccggctctttttggtaacaactactt
gatttgcggtggcacaagcaggaaagtactgtcttatgtatcaaggaaac
cagggacaaacttaagaatatcgaatattgctactacagctgctcagtta
tttgcaaggttttgtttccgttcagacaccttcccttgaggattttattc
tcatggcaagagatagcttcacaccaatattctaggccaggaaaagatat
gatgggcaggcagaaggtgttcagggaagaatgacagccgaaagtttctg
cctggctgctttagactgtaactgagttatgtggtgacttctggctggaa
gatagaagggagtgactttcaggtttgttggggcattccgcagtcaggca
ggaggatctctgtgaattcctggtcagcctaacttatataaggaggaggt
cagcctaatttatatagcgatctctagcccagctatataaatagtgagac
cctgtcttaaaaaaaaaaaaaaaaaagaaaaagaaaaaaagaaaaagaaa
aaaaaaaaagcaatcaaaaaacggttttcacccctagggatcctgcctga
ggtttctcagtatcgctgcactgcagcatttgagtaagaagtcaggtttc
caacgactcaccagcgaacattccttttgtgggaagaccactgcttactt
aatttgaggcttctgcgaagactaggtttcatcaagaaattctctaataa
ggagcaaaagagacggctcagatgagagctcttcgaagaatccagtgtga
ctcccaacaaccacacaagaactgtcttccgatcttgctcccggtgggtc
cgcgcagcgtccaaacagagcagggagataacaaaccctacaactctaca
tgattccctctgggtattttttgtaccactatagaaagtgcgaacgcagc
tctatatacaagtcagatcgattctcgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96397236_96398230
seq2: B6Ng01-283D09.b_46_1048 (reverse)

seq1  TTACTGAACACAATG-TATTAAGT-ACCCCAA-TCTGTCCCATCAAACCT  47
      ||||||||||||||| |||||||| ||||||| ||||| ||||| |||||
seq2  TTACTGAACACAATGTTATTAAGTAACCCCAATTCTGT-CCATCCAACCT  49

seq1  TCCGTTCATAG-AATAGAAACAGTGAAAGAGAACATATAATCCTAACACC  96
      ||||||||||| |||||||||||||||||||||||||||  | |||||||
seq2  TCCGTTCATAGAAATAGAAACAGTGAAAGAGAACATATATCCTTAACACC  99

seq1  GGGGGTACTGTGGCAGGGGGAATGCAAACTGGAGG-CCAGTATGGGCTAC  145
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGGGGTACTGTGGCAGGGGGAATGCAAACTGGAGGCCCAGTATGGGCTAC  149

seq1  ATAGC-AAGAGTCTG-CCGAT-AAAAGCATGGGAGGGATGG-AAAAAGTC  191
      ||||| ||||||||| ||||| ||||||||||||||||||| ||||||||
seq2  ATAGCAAAGAGTCTGCCCGATAAAAAGCATGGGAGGGATGGAAAAAAGTC  199

seq1  AGCCTCGTGAGATGGTAAATACTCGTGTTGCCAAGTGGCCAGGAAACAGG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCGTGAGATGGTAAATACTCGTGTTGCCAAGTGGCCAGGAAACAGG  249

seq1  CTGACTAGCTCAAGTTGTCCTCTGACCTCCTTGCGTAAGCCATGGCTTGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAGCTCAAGTTGTCCTCTGACCTCCTTGCGTAAGCCATGGCTTGT  299

seq1  ACGTACCCCCCCCACACACACACAAATAATGTAATTTTAAAAATTAAAGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACCCCCCCCACACACACACAAATAATGTAATTTTAAAAATTAAAGA  349

seq1  GATTCCAATAGTGATAATCGGACTTTGTCAGGTCGGGGATCAATAAATTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAATAGTGATAATCGGACTTTGTCAGGTCGGGGATCAATAAATTC  399

seq1  TTCACGGTGGTCTAGGAAAGTGGTGGGTAGAGGGTAGCGGTTCAGTTGAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGGTGGTCTAGGAAAGTGGTGGGTAGAGGGTAGCGGTTCAGTTGAC  449

seq1  TTGATAGGTAATAAGAATCTGTCAGGCTCTTGACAGGGGGCTAATGTTAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGTAATAAGAATCTGTCAGGCTCTTGACAGGGGGCTAATGTTAC  499

seq1  GTTAATGGGTGCGGGAGAAGCTGGTACCATAGAAGAGTCTGAGCTACAAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGGGTGCGGGAGAAGCTGGTACCATAGAAGAGTCTGAGCTACAAG  549

seq1  AATGAACCTTCCTCTCCTGCTTTAATATCTGTCCCCAGGCGCGACAGCAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCTTCCTCTCCTGCTTTAATATCTGTCCCCAGGCGCGACAGCAA  599

seq1  GCTGTCTCCGGCGTACAGTCAAGACAGCAGTGAGAGCCCGGGGAAAAAGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCCGGCGTACAGTCAAGACAGCAGTGAGAGCCCGGGGAAAAAGG  649

seq1  GGAGGGATTTAGAAGGGGGCTGATCCAACAGGCTGACAGAAAGCGTTATC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGATTTAGAAGGGGGCTGATCCAACAGGCTGACAGAAAGCGTTATC  699

seq1  TACGTCGCTGTCGGCGCCGAGGGACTAATTCGGGAAGTACCGAACCAAAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTCGCTGTCGGCGCCGAGGGACTAATTCGGGAAGTACCGAACCAAAC  749

seq1  CGGGTCAGAGCCACCAGGTCGAAGCCTTACCTGCCGTCCCTCCCCCACTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCAGAGCCACCAGGTCGAAGCCTTACCTGCCGTCCCTCCCCCACTC  799

seq1  AGGGCCCACGCAGCCGCCAACTTGAAATTTGCTTTTCTTCTTCCAGCCCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCACGCAGCCGCCAACTTGAAATTTGCTTTTCTTCTTCCAGCCCT  849

seq1  CGTTCTAGGCCCGCCTCCCCGAGCTCTCCATTGGTGGGTTTTCCTGGCCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTAGGCCCGCCTCCCCGAGCTCTCCATTGGTGGGTTTTCCTGGCCA  899

seq1  ATCGACGAGAGCGGAGGCGGGCGAGGAGGGGAGGAGGAGGGAGCGAGCTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACGAGAGCGGAGGCGGGCGAGGAGGGGAGGAGGAGGGAGCGAGCTT  949

seq1  AACCGGAACTGAGGCTTGGGAAGTGGCGCGCTGAGACCTGGGGCTGCAGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGAACTGAGGCTTGGGAAGTGGCGCGCTGAGACCTGGGGCTGCAGA  999

seq1  ATTC  995
      ||||
seq2  ATTC  1003

seq1: chr3_96186854_96187965
seq2: B6Ng01-283D09.g_68_1148

seq1  GAATTCTCGCCTCCCACGCGGGTGACCCGGGTTCGATTCCCGGCCAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGCCTCCCACGCGGGTGACCCGGGTTCGATTCCCGGCCAATGC  50

seq1  AGTACCTCTCTGTTTTGGCCCCCCTCTCTGCCTTCAGTGTACTCTTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTCTCTGTTTTGGCCCCCCTCTCTGCCTTCAGTGTACTCTTTTGG  100

seq1  GACCAGGACCCAAGTCCATCTTTTCCGGCTCTTTTTGGTAACAACTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGACCCAAGTCCATCTTTTCCGGCTCTTTTTGGTAACAACTACTT  150

seq1  GATTTGCGGTGGCACAAGCAGGAAAGTACTGTCTTATGTATCAAGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCGGTGGCACAAGCAGGAAAGTACTGTCTTATGTATCAAGGAAAC  200

seq1  CAGGGACAAACTTAAGAATATCGAATATTGCTACTACAGCTGCTCAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAAACTTAAGAATATCGAATATTGCTACTACAGCTGCTCAGTTA  250

seq1  TTTGCAAGGTTTTGTTTCCGTTCAGACACCTTCCCTTGAGGATTTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGGTTTTGTTTCCGTTCAGACACCTTCCCTTGAGGATTTTATTC  300

seq1  TCATGGCAAGAGATAGCTTCACACCAATATTCTAGGCCAGGAAAAGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAAGAGATAGCTTCACACCAATATTCTAGGCCAGGAAAAGATAT  350

seq1  GATGGGCAGGCAGAAGGTGTTCAGGGAAGAATGACAGCCGAAAGTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCAGGCAGAAGGTGTTCAGGGAAGAATGACAGCCGAAAGTTTCTG  400

seq1  CCTGGCTGCTTTAGACTGTAACTGAGTTATGTGGTGACTTCTGGCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGCTTTAGACTGTAACTGAGTTATGTGGTGACTTCTGGCTGGAA  450

seq1  GATAGAAGGGAGTGACTTTCAGGTTTGTTGGGGCATTCCGCAGTCAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGGGAGTGACTTTCAGGTTTGTTGGGGCATTCCGCAGTCAGGCA  500

seq1  GGAGGATCTCTGTGAATTCCTGGTCAGCCTAACTTATATAAGGAGGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATCTCTGTGAATTCCTGGTCAGCCTAACTTATATAAGGAGGAGGT  550

seq1  CAGCCTAATTTATATAGCGATCTCTAGCCCAGCTATATAAATAGTGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAATTTATATAGCGATCTCTAGCCCAGCTATATAAATAGTGAGAC  600

seq1  CCTGTCTTAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAAGAAAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAAGAAAAAGAAA  650

seq1  AAAAAAAAAGCAATCAAAAAACGGTTTTCACCCCTAGGGATCCTGCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGCAATCAAAAAACGGTTTTCACCCCTAGGGATCCTGCCTGA  700

seq1  GGTTTCTCAGTATCGCTGCACTGCAGCATTTGAGTAAGAAGTCAGGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCAGTATCGCTGCACTGCAGCATTTGAGTAAGAAGTCAGGTTTC  750

seq1  CAACGACTCACCAGCGAACATTCCTTTTGTGGGAAGACCACTGCTTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGACTCACCAGCGAACATTCCTTTTGTGGGAAGACCACTGCTTACTT  800

seq1  AATTTGAGGCTTCTGCGAAGACTAGGTTTCATCAAGAAATTCTCTAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGGCTTCTGCGAAGACTAGGTTTCATCAAGAAATTCTCTAATAA  850

seq1  GGAGCAAAAGAGACGGCTCAGAATGAGAGCTCTTCGAAGAATCCAGGTGT  900
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  GGAGCAAAAGAGACGGCTCAG-ATGAGAGCTCTTCGAAGAATCCA-GTGT  898

seq1  GACTCCCAACAACCACACAAGAACTGTCTTCCGATCTTTGCTCCCGGTGG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACTCCCAACAACCACACAAGAACTGTCTTCCGATC-TTGCTCCCGGTGG  947

seq1  GTCCGCGCAGCGTCCCAAACAGAGGCAGGGGAGATAAACAAAACCCTTAC  1000
      ||||||||||||| ||||||||| ||| ||||||| ||||||  || |||
seq2  GTCCGCGCAGCGT-CCAAACAGA-GCA-GGGAGAT-AACAAA--CCCTAC  991

seq1  AAACTCTTACCAATGATTTCCCTCTTGGGTATTTTTTGGTAACAAATTAT  1050
       ||||| |||  |||| ||||||| |||||||||||| ||| |  | |||
seq2  -AACTC-TAC--ATGA-TTCCCTC-TGGGTATTTTTT-GTACC--ACTAT  1032

seq1  AAGGAAAAAGTGCGAACGCAGCTCTAAATAATACAAAGTCAGGGAACCGA  1100
          | |||||||||||||||||||| |||     |||||||   | |||
seq2  ----AGAAAGTGCGAACGCAGCTCTATATA----CAAGTCAG---ATCGA  1071

seq1  TTTCCTCGCTTT  1112
      ||  ||||||||
seq2  TT--CTCGCTTT  1081