BAC Information

Click to search

BAC

Clone NameB6Ng01-283J08
Chromosome3 (Build37)
Map Location 22,768,291 - 22,892,142
singlet/doubletdoublet
Overlap geneLOC623751
Upstream geneLOC100040353, Tbl1xr1, LOC545506, LOC675593, LOC100040378
Downstream geneLOC100039548, EG635702
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283J08.bB6Ng01-283J08.g
ACCGA082509GA082510
length1,1481,164
definitionB6Ng01-283J08.b B6Ng01-283J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,768,291 - 22,769,102)(22,890,971 - 22,892,142)
sequence
gaattcacgcagttgaatccttctcaacagtctgtgttgcgggaacactt
cattaccaccattccccagctgaagagttctgaattcacgcagttgaatc
cttctcaacagtctgttttacgggaacacttcattaccaccattccccag
ctgaagagttctgaattcacgcagttctggttccggaatgagggatcttc
cttgcgccagtgatggttaactcccgtcccgagttttcttgtcccgggtt
ttttcttcccggattttctcgtcccgggtttcggcaccaactcttacacg
cgttctcgtgaccggccaggaaagacgcaacaaaccggaatcttctgcgg
caaaagctttattgcttacatcttcaggagccagagagcaagagagcaag
agagcaagagcaagagcaagagcaagaaaaagaacaagaacaagaaagca
agagagagcaagaaagcaagaaaaagaacaagaacaagaaagcaagagag
agcaagaaagcaagaaaaagaacaagaacaagaaagcaagagagagaaag
caagagagagaaaaagcaagaacaagagagagaaaaagcaagaacaagag
agagagagtggcaaaaccccgtcccttttaaggagaattatcctccgcct
aggacgtattactccctgattggctgcagcccatcggcccagttgtcatc
acgagaaaggcagaacacatgacgggaaaactgcccctgcacgtgtgcag
attatgtttaccacttagaacacagctgtcagcgccatcttataatggca
aatgtgagggcggctcctcacacacagtgggttttattgtgagatgtttt
catgtatatgcattgctatatgcatagatatgattagtcacctcagttgc
cctctcctatcccaaatcctattattgctagatcatttacttcccccagc
tagtcccctttaacattttttcccataattgttgaagatgacccatcgag
tttgcatttagcttactttcaggaacacgagtcaatgtttgttgactttc
cagagcatgcatccttaactagtgactaaattcacagaggaaatctccct
cctgaaaacaatttaacttaggttacatatatggtacttcacagaatg

gaattctcattctgtgtcatagacattcatggtctcatattccctgctgg
tcctttatgctctacaataacaaatttccacaacagtataattgatttta
aaaatcaggtttttgcagttctttaatgaaaatagaattttatagcagtt
ttcattaataaaaatttatgaactcataaaatggaagtgaactaacattt
actgaatggctaccatgtgtgcactttgggaagcactttatatgcatgat
ctcacttaattgccagcaaaaacttccgaatagctgttaacttcactatg
cagataagataacagagccttggagagggcagacttcttgctgtttccaa
aaccagtcattaatggattcaaatatgaattcatagaggtcttattctga
ggcattctggttacaacacactctagtatactatgataaattaattagat
agtataatttaagcaacatagcagttcatttggttgatttacatttcttc
atttatctacttatgaaagtaacatagctcataagaaaacttgcagaaac
cttacaaaacacatgaatcttatctaataatcctaccacttaagaagaag
gatcaataataacagcttgtgtagattcaacttttgcaaattcaggctta
aaacttccttttcataactcctacttgaatgtaaaatgcaatgcttattt
tctatgttattaaaattgttataatacatgattctttatgtttatacatt
ttccatattttgaagacacagcactacaaactttcctgttgtttttaaat
caccattattctttaagaacaaaacaagagagtagtgcttgataacaaaa
acaacttgggctagaaatacagaaaactgaattctcggtctgcgatttgc
tagctctaagtcagagaaagatttttttgggccttcccggcactgatttc
ttttgaaaaagaggattagaatacgtaccatttttcaaataccttaagtt
tagaccttgtaattacatatagatccaacattgatactcaaacagggtat
attttgtacatcaagattagcctactgcatttggggccagccgagccgaa
gcctgcctgactggtgcattggatccaagtgattactccaattcctgaat
gtcccaattacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_22768291_22769102
seq2: B6Ng01-283J08.b_367_1189

seq1  CGCAACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACATCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACATCTTC  50

seq1  AGGAGCCAGAGAGCAAGAGAGCAAGAGAGCAAGAGCAAGAGCAAGAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAGAGAGCAAGAGAGCAAGAGAGCAAGAGCAAGAGCAAGAGCAA  100

seq1  GAAAAAGAACAAGAACAAGAAAGCAAGAGAGAGCAAGAAAGCAAGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAACAAGAACAAGAAAGCAAGAGAGAGCAAGAAAGCAAGAAAAA  150

seq1  GAACAAGAACAAGAAAGCAAGAGAGAGCAAGAAAGCAAGAAAAAGAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAACAAGAAAGCAAGAGAGAGCAAGAAAGCAAGAAAAAGAACAA  200

seq1  GAACAAGAAAGCAAGAGAGAGAAAGCAAGAGAGAGAAAAAGCAAGAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAAAGCAAGAGAGAGAAAGCAAGAGAGAGAAAAAGCAAGAACAA  250

seq1  GAGAGAGAAAAAGCAAGAACAAGAGAGAGAGAGTGGCAAAACCCCGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAAAAGCAAGAACAAGAGAGAGAGAGTGGCAAAACCCCGTCCC  300

seq1  TTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCT  350

seq1  GCAGCCCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAACACATGACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAACACATGACGG  400

seq1  GAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACCACTTAGAACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACCACTTAGAACACAG  450

seq1  CTGTCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCTCACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCTCACACAC  500

seq1  AGTGGGTTTTATTGTGAGATGTTTTCATGTATATGCATTGCTATATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTTTATTGTGAGATGTTTTCATGTATATGCATTGCTATATGCAT  550

seq1  AGATATGATTAGTCACCTCAGTTGCCCTCTCCTATCCCAAATCCTATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGATTAGTCACCTCAGTTGCCCTCTCCTATCCCAAATCCTATTAT  600

seq1  TGCTAGATCATTTACTTCCCCCAGCTAGTCCCC-TTAACATTTTT--CCA  647
      ||||||||||||||||||||||||||||||||| |||||||||||  |||
seq2  TGCTAGATCATTTACTTCCCCCAGCTAGTCCCCTTTAACATTTTTTCCCA  650

seq1  TAATTGTTGAAGATGACCCATCGAG-TTGCA-TTAGCTTACTTTCAGGAA  695
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  TAATTGTTGAAGATGACCCATCGAGTTTGCATTTAGCTTACTTTCAGGAA  700

seq1  CACGAGTCAATGTTTGTTGAC-TTCCAGAGCATGCATCCTTTACTAGTGA  744
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  CACGAGTCAATGTTTGTTGACTTTCCAGAGCATGCATCCTTAACTAGTGA  750

seq1  CTAAA-TCACAGAAGAAAATCTCCCTCCTGAAAACAATT--AATTAAG-T  790
      ||||| |||||| || |||||||||||||||||||||||  | ||| | |
seq2  CTAAATTCACAG-AGGAAATCTCCCTCCTGAAAACAATTTAACTTAGGTT  799

seq1  ACATATAT-GTAC-TCAGAGAATG  812
      |||||||| |||| ||| ||||||
seq2  ACATATATGGTACTTCACAGAATG  823


seq1: chr3_22890971_22892142
seq2: B6Ng01-283J08.g_64_1227 (reverse)

seq1  TCTGTAAATGGAACATTCAGGGATGTGAAATATATCACTTGGATCCAATC  50
      ||||||| ||| ||||||||| || || | || |||||||||||||||| 
seq2  TCTGTAATTGGGACATTCAGGAAT-TGGAGTA-ATCACTTGGATCCAATG  48

seq1  CACAGGTCA-GCA-GCCTCTGCTCTGCT-GCCCCAAATGCAGTTAGCCTA  97
      |||  |||| ||| || || |||| ||| ||||||||||||| ||| || 
seq2  CACCAGTCAGGCAGGCTTCGGCTCGGCTGGCCCCAAATGCAG-TAGGCT-  96

seq1  AATCTTTGGATGTAC-AAATATACCCTTGTTTGAGTATTCAAATGTTGGA  146
      ||||||  ||||||| |||||||||| |||||||||||   |||||||||
seq2  AATCTT--GATGTACAAAATATACCC-TGTTTGAGTAT--CAATGTTGGA  141

seq1  TCTTATATTGTAATTACAGGGTCTTAAAACTTAAGGTATTTGAAAAATGG  196
      || |||| |||||||||| |||||  ||||||||||||||||||||||||
seq2  TC-TATA-TGTAATTACAAGGTCT--AAACTTAAGGTATTTGAAAAATGG  187

seq1  TACGTATTCTAATTCTCTTTTTCAAAAGAAATCAGTGCCGGGAAGG-CCA  245
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  TACGTATTCTAATCCTCTTTTTCAAAAGAAATCAGTGCCGGGAAGGCCCA  237

seq1  AAAAAATCTTTCTCTGACTTAGAGCTAGCAAATCGCAGACCGAGAATTCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTTTCTCTGACTTAGAGCTAGCAAATCGCAGACCGAGAATTCA  287

seq1  GTTTTCTGTATTTCTAGCCCAAGTTGTTTTTGTTATCAAGCACTACTCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTATTTCTAGCCCAAGTTGTTTTTGTTATCAAGCACTACTCTC  337

seq1  TTGTTTTGTTCTTAAAGAATAATGGTGATTTAAAAACAACAGGAAAGTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTCTTAAAGAATAATGGTGATTTAAAAACAACAGGAAAGTTT  387

seq1  GTAGTGCTGTGTCTTCAAAATATGGAAAATGTATAAACATAAAGAATCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCTGTGTCTTCAAAATATGGAAAATGTATAAACATAAAGAATCAT  437

seq1  GTATTATAACAATTTTAATAACATAGAAAATAAGCATTGCATTTTACATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATAACAATTTTAATAACATAGAAAATAAGCATTGCATTTTACATT  487

seq1  CAAGTAGGAGTTATGAAAAGGAAGTTTTAAGCCTGAATTTGCAAAAGTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGGAGTTATGAAAAGGAAGTTTTAAGCCTGAATTTGCAAAAGTTG  537

seq1  AATCTACACAAGCTGTTATTATTGATCCTTCTTCTTAAGTGGTAGGATTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACACAAGCTGTTATTATTGATCCTTCTTCTTAAGTGGTAGGATTA  587

seq1  TTAGATAAGATTCATGTGTTTTGTAAGGTTTCTGCAAGTTTTCTTATGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAAGATTCATGTGTTTTGTAAGGTTTCTGCAAGTTTTCTTATGAG  637

seq1  CTATGTTACTTTCATAAGTAGATAAATGAAGAAATGTAAATCAACCAAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTACTTTCATAAGTAGATAAATGAAGAAATGTAAATCAACCAAAT  687

seq1  GAACTGCTATGTTGCTTAAATTATACTATCTAATTAATTTATCATAGTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCTATGTTGCTTAAATTATACTATCTAATTAATTTATCATAGTAT  737

seq1  ACTAGAGTGTGTTGTAACCAGAATGCCTCAGAATAAGACCTCTATGAATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGTGTGTTGTAACCAGAATGCCTCAGAATAAGACCTCTATGAATT  787

seq1  CATATTTGAATCCATTAATGACTGGTTTTGGAAACAGCAAGAAGTCTGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGAATCCATTAATGACTGGTTTTGGAAACAGCAAGAAGTCTGCC  837

seq1  CTCTCCAAGGCTCTGTTATCTTATCTGCATAGTGAAGTTAACAGCTATTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAGGCTCTGTTATCTTATCTGCATAGTGAAGTTAACAGCTATTC  887

seq1  GGAAGTTTTTGCTGGCAATTAAGTGAGATCATGCATATAAAGTGCTTCCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTTTGCTGGCAATTAAGTGAGATCATGCATATAAAGTGCTTCCC  937

seq1  AAAGTGCACACATGGTAGCCATTCAGTAAATGTTAGTTCACTTCCATTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCACACATGGTAGCCATTCAGTAAATGTTAGTTCACTTCCATTTT  987

seq1  ATGAGTTCATAAATTTTTATTAATGAAAACTGCTATAAAATTCTATTTTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCATAAATTTTTATTAATGAAAACTGCTATAAAATTCTATTTTC  1037

seq1  ATTAAAGAACTGCAAAAACCTGATTTTTAAAATCAATTATACTGTTGTGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGAACTGCAAAAACCTGATTTTTAAAATCAATTATACTGTTGTGG  1087

seq1  AAATTTGTTATTGTAGAGCATAAAGGACCAGCAGGGAATATGAGACCATG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTTATTGTAGAGCATAAAGGACCAGCAGGGAATATGAGACCATG  1137

seq1  AATGTCTATGACACAGAATGAGAATTC  1172
      |||||||||||||||||||||||||||
seq2  AATGTCTATGACACAGAATGAGAATTC  1164


| Home | SequenceCutter | Blast | Download |