BAC Information

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BAC

Clone NameB6Ng01-283N03
Chromosome3 (Build37)
Map Location 41,521,838 - 41,522,966
singlet/doubletsinglet
Overlap geneSclt1
Upstream geneSlc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17
Downstream geneD3Ertd751e, LOC666031, LOC100039204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283N03.bB6Ng01-283N03.g
ACCGA082681GA082682
length1,1761,123
definitionB6Ng01-283N03.b B6Ng01-283N03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtgtttagctctgttcaccattttttaaataggattatttagt
tctctggagtctaacttgttgagtttttaatatatgttggatattagcgc
tctgttggatgtaggattggtaaagatctttttcagtctgttggttgctg
ttttgtcctattgacagtgtcccttgtcttacagaagctttctgatttta
tgaggtcccatttgtccatgcttgatcttagagcacaagccattggtatt
ctgttcaggaacttttcccctgtgcccatgtacctagactttccccaact
ttctcttttattagattcagtgtatctggttttacatgtaggtccttgat
ccacttggacttgagctttgtacagggcgataagaatggatctattggca
tgcttctacattttgatcaaaagttgaaccatcatcatttgttgaaaacc
tgtcttttttccactggatgattttactactttgtcaagcatcaaatgac
tgtaggtatatgggttcatttctgggtcttcaattctactccattgatct
acctgtctgtcactgtatcaattccatgcagtttttaacacaattgctct
gtagtacaccttcaggtccagaatgctgattcgtccagaagttcttttat
tgttgagaatagtttatgctactatgggtttatgttattccaaatgagtt
tgagaattgctctttctaactctatgaagaattgagttagaatttttaaa
tagtttttattaggtattttcatcatttacatatccaatgctatcccaaa
agtcccccataccctccccccaactcttctaaccacgcactcgcactttt
tggccctggcattcccctgtactggggcatataaagtttgcaagtccaat
ggcctctctttccagtgattgcctactaggccatcttttgatacatatgc
acctagagtcaagagctctggggtactggttagtcatatgttgttccacc
tatagggttgggggtccttagctccttgggtactttctctatcttctctt
tgggggcctgtgattcaatcataagctgactgtgagcatacaccttctgt
gttggctagctcggcctagtcccacagagaacggcattattctggaaatt
caggcaaaactctcgtctaagtgcat
gaattcattaaatcaatatgagtcatatatttcctatatgaaataaattt
agtagattttaaataaaaaatagaaggactagtcatttaatattacatga
gtaaaagtatgaatattcaaacatatcaaactgatgataactcaggtaga
gttcagtttgccctgcagagatttaaaaatttcagaaagataaagttctg
atgtttcatcatactaaataataaaagcaattcaaagataaacttttaca
tgtcacttattatatatatgaatttatgacagtgttttacttaattgttc
tgatatttctatgctatgtaatcaccgataattacttcaaattattagaa
acatcaaaaaattttacaaatgggctcatatagttcaaattcactttgtt
caagactcaatcatacattagctctttgaatttattttccatattttcta
tattggcttttattgtctgtcttttcagtctgggtgaacattcctaagtc
tctcattcactgtttttcatctctactactgcctctttttatattttaga
attttatttggttctgtttttaaatgttagcaaggatgctaagactgcac
cttagtgcagcccctactgaagctaaaactaaagctatcacatgatccag
ccctaccactcccatggatatactgtaatgggatcttagcacacagcatt
tatagatgcctatccatgtgtactgtagcaatattcacaacatcaaagct
gtggaatcaacctggatgtcagcagatgacacatatagagtgaattgtat
tcaactataagaaacaaaatggataaaccctgagattacttatgataaat
actgcaggctttcttcttatgtggaatttagactttcaagaaatatgcaa
ggcataaaaataagagtgactactttgggaagaggaaggaattttgctgg
gtgagaagagtaattgaaactcccaacacttaacaggcatgcaaatattt
ggaatatttacctttactgttattgtactaacacctgataggactttagg
aggacggtttctttgagtcagaacatagccacactggtaaccttcatgag
acaaggtggttcctatccagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41521838_41522966
seq2: B6Ng01-283N03.g_66_1188

seq1  GAATTCATTAAATCAATATGAGTCATATATTTCCTATATGAAATAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAATCAATATGAGTCATATATTTCCTATATGAAATAAATTT  50

seq1  AGTAGATTTTAAATAAAAAATAGAAGGACTAGTCATTTAATATTACATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATTTTAAATAAAAAATAGAAGGACTAGTCATTTAATATTACATGA  100

seq1  GTAAAAGTATGAATATTCAAACATATCAAACTGATGATAACTCAGGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTATGAATATTCAAACATATCAAACTGATGATAACTCAGGTAGA  150

seq1  GTTCAGTTTGCCCTGCAGAGATTTAAAAATTTCAGAAAGATAAAGTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTTGCCCTGCAGAGATTTAAAAATTTCAGAAAGATAAAGTTCTG  200

seq1  ATGTTTCATCATACTAAATAATAAAAGCAATTCAAAGATAAACTTTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCATCATACTAAATAATAAAAGCAATTCAAAGATAAACTTTTACA  250

seq1  TGTCACTTATTATATATATGAATTTATGACAGTGTTTTACTTAATTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTATTATATATATGAATTTATGACAGTGTTTTACTTAATTGTTC  300

seq1  TGATATTTCTATGCTATGTAATCACCGATAATTACTTCAAATTATTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTCTATGCTATGTAATCACCGATAATTACTTCAAATTATTAGAA  350

seq1  ACATCAAAAAATTTTACAAATGGGCTCATATAGTTCAAATTCACTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAAAAATTTTACAAATGGGCTCATATAGTTCAAATTCACTTTGTT  400

seq1  CAAGACTCAATCATACATTAGCTCTTTGAATTTATTTTCCATATTTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTCAATCATACATTAGCTCTTTGAATTTATTTTCCATATTTTCTA  450

seq1  TATTGGCTTTTATTGTCTGTCTTTTCAGTCTGGGTGAACATTCCTAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTTTTATTGTCTGTCTTTTCAGTCTGGGTGAACATTCCTAAGTC  500

seq1  TCTCATTCACTGTTTTTCATCTCTACTACTGCCTCTTTTTATATTTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCACTGTTTTTCATCTCTACTACTGCCTCTTTTTATATTTTAGA  550

seq1  ATTTTATTTGGTTCTGTTTTTAAATGTTAGCAAGGATGCTAAGACTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTGGTTCTGTTTTTAAATGTTAGCAAGGATGCTAAGACTGCAC  600

seq1  CTTAGTGCAGCCCCTACTGAAGCTAAAACTAAAGCTATCACATGATCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGCAGCCCCTACTGAAGCTAAAACTAAAGCTATCACATGATCCAG  650

seq1  CCCTACCACTCCCATGGATATACTGTAATGGGATCTTAGCACACAGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCACTCCCATGGATATACTGTAATGGGATCTTAGCACACAGCATT  700

seq1  TATAGATGCCTATCCATGTGTACTGTAGCAATATTCACAACATCAAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGCCTATCCATGTGTACTGTAGCAATATTCACAACATCAAAGCT  750

seq1  GTGGAATCAACCTGGATGTCAGCAGATGACACATATAGAGTGAATTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATCAACCTGGATGTCAGCAGATGACACATATAGAGTGAATTGTAT  800

seq1  TCAACTATAAGAAACAAAATGGATAAACCCTGAGATTACTTATGATAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTATAAGAAACAAAATGGATAAACCCTGAGATTACTTATGATAAAT  850

seq1  ACTGCAGGCTTTCTTCTTATGTGGAATTTAGACTTTCAAGAAATATGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGCTTTCTTCTTATGTGGAATTTAGACTTTCAAGAAATATGCAA  900

seq1  GGCATAAAAATAAGAGTGACTACTTTGGGAAGAGGAAGGAATTTTGCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAAAATAAGAGTGACTACTTTGGGAAGAGGAAGGAATTTTGCTGG  950

seq1  GTGAGAAAGAGTAATTGAAAACTCCCAACACTTAACAGGCATGCAAATAT  1000
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGAG-AAGAGTAATTG-AAACTCCCAACACTTAACAGGCATGCAAATAT  998

seq1  TTGGGAATATTTACCTTTACTGTTATTGTAACCAAACACCTGATAAGGGA  1050
      || |||||||||||||||||||||||||||  | |||||||||||  |||
seq2  TT-GGAATATTTACCTTTACTGTTATTGTA--CTAACACCTGATA--GGA  1043

seq1  CTTAAGGGAGGAACGGTTTCTTTTGAGTCAGAACATAG-CACACTGGGAA  1099
      ||| | ||||| |||||||| ||||||||||||||||| |||||||| ||
seq2  CTTTA-GGAGG-ACGGTTTC-TTTGAGTCAGAACATAGCCACACTGGTAA  1090

seq1  CC-TCATG-GAGCAGGTGGTTCCTAT-CAGTGT  1129
      || ||||| ||  ||||||||||||| ||||||
seq2  CCTTCATGAGACAAGGTGGTTCCTATCCAGTGT  1123