gaattcattctttttaatagatgagtagtactccattgtgtaaatgtacc
tcatttttcgtatccattcctctgttgagggacatctgggttctttccag
cttctggctattataaataaggctgctatgaacatagtggagcatgtgtc
cttcttaccggaaatcttctggatatatgcccaggagaggtattgcggga
tcctccggtagtactatgtccaattttcggaggaaccgccagactgattt
ccagagtggttgtacaagcttgcaatcccaccaacaatggaggagtgttc
ctctttctccacatcctcgccaccatctgctgtcacctgaatttttgatc
ttagccattctgactggtgtgagatggaatctcagggttgttttgatttg
catttctctgattattaaggatgttgaaaaaaatttcaagtgtttttcag
cctttcggtattcctcaggtgagaattctttgttcagctctgagcccaat
cttttaagggggctatttgattttctggagtccaccctcttgagttcttt
atatatattggatattagtcccctatctgatttaagataggtaaagatcc
tttcccaatctgttggtgatctttttgtcttattgatggtttcttttgcc
ttgcagaagctttgcagtttcatgaggtcccatttgtcaatcctcgatct
taaagcacaagccattgctgttctattcaggaatttatatatatatatat
atatatatatatatatatatatatatatatatatatatatat

gaattcttaacaagaaagacatatgggctcaaataataatgggaaaactt
tcctttaaagttgtttcttttgtattttaaggttatattacttcagtctt
cccttccttcatgccattccatatcatatattccagtttctctctctttt
aaatccattcttttatttttcagatttctattttgtaactacatgctgtt
cttagcactcctgaaaagaatgctaattcttcagtatttattaatcataa
agattacccatgtagtggcagagaatgctatagagatgtatttatttaaa
tgttaagacttaaagaagttgtattttgttaaactactgtcttagatttt
tcacagtccaaaacaaatgcagctatactaccacaatgaataatatcaaa
taaagtaaaattgtatttttttccttgtatttttttttttgcctgtccgt
aaagtggggtatgttgagattatttgataaagccaccttttttggtacca
tgaatatctagcagtcagtcaattataactgtcactagataatcagactt
ctgttctctttgaacccattctatagctatatttagtaagaaggaaggga
taaaatactatgataaatatgcagtattaaaagaatagatgccacaggac
agaaagacatatggtgatatgaaggaggaaggagactgtgacaaaagaaa
taaatgacacatgtggcttagacacctggatagggacagttctgatgaag
atgaaagacaggaaaattaaaagaaagggggaaatggaaaaaataatata
gacttcattggcatggtttcaaagcccagtgagataagaaaactcattga
aaggggagatcattaatcatgggtatttcaattagttggtattgactggg
ctggcaatcatggcattgataagagaagtttctttttctggaggcaagac
agctgcctcctgacatagtttctgagcatcatagacccttcctaatgcac
actagcctaatgtgcctgcaatgagacagatgaaaatagaatgtgccgca
agcaatccaggtccagtgatcacgggcatccacaa

seq1: chr3_43224284_43225384
seq2: B6Ng01-283O06.g_65_1149

seq1  GAATTCTTAACAAGAAAGACATATGGGCTCAAATAATAATGGGAAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACAAGAAAGACATATGGGCTCAAATAATAATGGGAAAACTT  50

seq1  TCCTTTAAAGTTGTTTCTTTTGTATTTTAAGGTTATATTACTTCAGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAAGTTGTTTCTTTTGTATTTTAAGGTTATATTACTTCAGTCTT  100

seq1  CCCTTCCTTCATGCCATTCCATATCATATATTCCAGTTTCTCTCTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTCATGCCATTCCATATCATATATTCCAGTTTCTCTCTCTTTT  150

seq1  AAATCCATTCTTTTATTTTTCAGATTTCTATTTTGTAACTACATGCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATTCTTTTATTTTTCAGATTTCTATTTTGTAACTACATGCTGTT  200

seq1  CTTAGCACTCCTGAAAAGAATGCTAATTCTTCAGTATTTATTAATCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACTCCTGAAAAGAATGCTAATTCTTCAGTATTTATTAATCATAA  250

seq1  AGATTACCCATGTAGTGGCAGAGAATGCTATAGAGATGTATTTATTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACCCATGTAGTGGCAGAGAATGCTATAGAGATGTATTTATTTAAA  300

seq1  TGTTAAGACTTAAAGAAGTTGTATTTTGTTAAACTACTGTCTTAGATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGACTTAAAGAAGTTGTATTTTGTTAAACTACTGTCTTAGATTTT  350

seq1  TCACAGTCCAAAACAAATGCAGCTATACTACCACAATGAATAATATCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTCCAAAACAAATGCAGCTATACTACCACAATGAATAATATCAAA  400

seq1  TAAAGTAAAATTGTATTTTTTTCCTTGTATTTTTTTTTTTGCCTGTCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAAAATTGTATTTTTTTCCTTGTATTTTTTTTTTTGCCTGTCCGT  450

seq1  AAAGTGGGGTATGTTGAGATTATTTGATAAAGCCACCTTTTTTGGTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGGTATGTTGAGATTATTTGATAAAGCCACCTTTTTTGGTACCA  500

seq1  TGAATATCTAGCAGTCAGTCAATTATAACTGTCACTAGATAATCAGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATCTAGCAGTCAGTCAATTATAACTGTCACTAGATAATCAGACTT  550

seq1  CTGTTCTCTTTGAACCCATTCTATAGCTATATTTAGTAAGAAGGAAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCTTTGAACCCATTCTATAGCTATATTTAGTAAGAAGGAAGGGA  600

seq1  TAAAATACTATGATAAATATGCAGTATTAAAAGAATAGATGCCACAGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACTATGATAAATATGCAGTATTAAAAGAATAGATGCCACAGGAC  650

seq1  AGAAAGACATATGGTGATATGAAGGAGGAAGGAGACTGTGACAAAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACATATGGTGATATGAAGGAGGAAGGAGACTGTGACAAAAGAAA  700

seq1  TAAATGACACATGTGGCTTAGACACCTGGATAGGGACAGTTCTGATGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACACATGTGGCTTAGACACCTGGATAGGGACAGTTCTGATGAAG  750

seq1  ATGAAAGACAGGAAAATTAAAAGAAAGGGGGAAATGGAAAAAATAATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGACAGGAAAATTAAAAGAAAGGGGGAAATGGAAAAAATAATATA  800

seq1  GACTTCATTGGCATGGTTTCAAAGCCCAGTGAGATAAGAAAACTCATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATTGGCATGGTTTCAAAGCCCAGTGAGATAAGAAAACTCATTGA  850

seq1  AAGGGGAGATCATTAATCATGGGTATTTCAATTAGTTGGTATTGACTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAGATCATTAATCATGGGTATTTCAATTAGTTGGTATTGACTGGG  900

seq1  CTGGCAATCATGGCATTGATAAGAGAAGGTTTCTTTTCTGGAGGCAAGAC  950
      |||||||||||||||||||||||||||| ||  |||||||||||||||||
seq2  CTGGCAATCATGGCATTGATAAGAGAAGTTTCTTTTTCTGGAGGCAAGAC  950

seq1  AGGCTGCCTCCTGACATAGTTTCTGAGCAATCCATAAGGACCCTTCCTAT  1000
      | |||||||||||||||||||||||||||   ||||  ||||||||||| 
seq2  A-GCTGCCTCCTGACATAGTTTCTGAGCA--TCATA--GACCCTTCCTAA  995

seq1  TGCACACTTAGCCCTAATGTGGCTGGCAAATGAGACAAGGATGAAAAATA  1050
      ||||||| ||| ||||||||| |||   |||||||||  |||| ||||||
seq2  TGCACAC-TAG-CCTAATGTGCCTG--CAATGAGACA--GATG-AAAATA  1038

seq1  GAATTGTGCCGCAAAGCCATCCCAGTCCAGTGATCACGGGGCCATCCACA  1100
      ||| |||||||| |||| ||||  ||||||||||||||||  ||||||||
seq2  GAA-TGTGCCGC-AAGCAATCCAGGTCCAGTGATCACGGG--CATCCACA  1084

seq1  A  1101
      |
seq2  A  1085