BAC Information

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BAC

Clone NameB6Ng01-284A19
Chromosome3 (Build37)
Map Location 12,857,782 - 12,992,903
singlet/doubletdoublet
Overlap geneEG668033, LOC668037
Upstream geneEG621965, LOC100039798
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284A19.bB6Ng01-284A19.g
ACCGA082849GA082850
length1,091804
definitionB6Ng01-284A19.b B6Ng01-284A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,857,782 - 12,858,884)(12,992,100 - 12,992,903)
sequence
gaattcatacaggaaagaaaccttacaaatgtagtgaatgtgacaaatgc
tttacccagaaatcccatcttagtattcatcagaaaattcatacaggaga
gaaaccttacaaatagaatgtatgtgacaaatacaatactcacaatgtca
gtcttagaaatcatcagttatttcatacagtagagaatctttataaatga
agtgaacgagacaattctttaccaagatatatcatctcaaaattcattag
agaatacttagagaagacaaacttttcaaatatattgtaggtatgaatcc
tttccttttggcctatttcctagactgtaacagtgaatacttacaggcta
gaaacttaactcatgcattatatgaagaaatatctttgacttcatttcag
gtcagagagaacatctaagaactttttagggtaaagtatttctgttgggg
aaaatgttgtattcttgacaacacttgaggctccacactagagaattagt
atgattatgaaaatcttgtgaaaatattcatgcaatgttcaaatcttaga
taatgtcaactatttatgttgggagaaactctgaaaatgtgaaaatgtag
aaagcttttcatgacacctttttacttgttcaccctcaaacgttataaga
tgaagataagttaggaagtcagaagatagtattgtataacactttcattg
agacagaaataatccatttcaaaaggaaactatttaaggtctttaataca
accctcaaaataggtaataaaactggtagcattttgtatatttttattgt
cctgtaactaactccaataaaactgaaaaattcaacaaaaaaaaaaaaaa
aatagaaaaatagtaaggataacataatttaacactttcatgctgtttga
ggtaatagaaatctgtacagtcgtcatacaaaaagatgaaagtttcttaa
aatattaaaaccataaatgtatgttttagtttatatcacttaatgtattt
tctaataaaataaaaatgagttagtgagataaactgtattctaactgttt
atgccacatgtcaatttgctcatatagctgataactcaaat

gaattcttgctggcgagatactaggtcgggataatacatgttctgcatgt
attattctcattccttgagtcatattcaaaaaattaggcatccactttcc
ttatattaattctattgattttcagttgtaggcccacacacacacaaaca
cacacaatctcacatgtacatatttaaatgatttttatagagggtgatgt
agttcattctttaagtgttcttatcccattttctccacactgtttgataa
aggtataatttctctgtaacagaaaatgtgccaacacgtagagaattaaa
agtgtgtagctgtgtcagtttattgttggattacctattctgttacattt
tgtgtactaaaaatgaattctatgtgtgtgtttttatgttaacttcatgc
aactaatatatggataatctgatgtatattttgagatctggtattttgat
ggctttaacattgtttttctttaagattgctttggattcaataacctttg
gtgtagtttgagagtattatagacagaactatgaaaggaaaattacaatt
atcatattttactgttctactgaaatgactatgcttagtgcaagtaaaaa
ccaatgataataaagtatgctaattcttttttaacacaaattgttcattc
attcattcattcattcattcattcattcattcttattccaggacattttc
aaatggacagaaaaggaatagaaaacatctgaatataatgttagcaacag
aaatgattttcactctgaaggaaatgagaaagaggggagggagggagaga
aaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_12857782_12858884
seq2: B6Ng01-284A19.b_47_1137

seq1  GAATTCATACAGGAAAGAAACCTTACAAATGTAGTGAATGTGACAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGGAAAGAAACCTTACAAATGTAGTGAATGTGACAAATGC  50

seq1  TTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAATTCATACAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAATTCATACAGGAGA  100

seq1  GAAACCTTACAAATAGAATGTATGTGACAAATACAATACTCACAATGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTACAAATAGAATGTATGTGACAAATACAATACTCACAATGTCA  150

seq1  GTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATCTTTATAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATCTTTATAAATGA  200

seq1  AGTGAACGAGACAATTCTTTACCAAGATATATCATCTCAAAATTCATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACGAGACAATTCTTTACCAAGATATATCATCTCAAAATTCATTAG  250

seq1  AGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAGGTATGAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAGGTATGAATCC  300

seq1  TTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGAATACTTACAGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGAATACTTACAGGCTA  350

seq1  GAAACTTAACTCATGCATTATATGAAGAAATATCTTTGACTTCATTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTAACTCATGCATTATATGAAGAAATATCTTTGACTTCATTTCAG  400

seq1  GTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGTATTTCTGTTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGTATTTCTGTTGGGG  450

seq1  AAAATGTTGTATTCTTGACAACACTTGAGGCTCCACACTAGAGAATTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTGTATTCTTGACAACACTTGAGGCTCCACACTAGAGAATTAGT  500

seq1  ATGATTATGAAAATCTTGTGAAAATATTCATGCAATGTTCAAATCTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATGAAAATCTTGTGAAAATATTCATGCAATGTTCAAATCTTAGA  550

seq1  TAATGTCAACTATTTATGTTGGGAGAAACTCTGAAAATGTGAAAATGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCAACTATTTATGTTGGGAGAAACTCTGAAAATGTGAAAATGTAG  600

seq1  AAAGCTTTTCATGACACCTTTTTACTTGTTCACCCTCAAACGTTATAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTTCATGACACCTTTTTACTTGTTCACCCTCAAACGTTATAAGA  650

seq1  TGAAGATAAGTTAGGAAGTCAGAAGATAGTATTGTATAACACTTTCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATAAGTTAGGAAGTCAGAAGATAGTATTGTATAACACTTTCATTG  700

seq1  AGACAGAAATAATCCATTTCAAAAGGAAACTATTTAAGGTCTTTAATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAATAATCCATTTCAAAAGGAAACTATTTAAGGTCTTTAATACA  750

seq1  ACCCTCAAAATAGGTAATAAAACTGGTAGCATTTTGTATATTTTTATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAAAATAGGTAATAAAACTGGTAGCATTTTGTATATTTTTATTGT  800

seq1  CCTGTAACTAACTCCAATAAAACTGAAAAATTCAACAAAAAAAAAAAAAA  850
      ||||||||||||||||||||||||||||||||||||     |||||||||
seq2  CCTGTAACTAACTCCAATAAAACTGAAAAATTCAAC-----AAAAAAAAA  845

seq1  AAAAAAAAAGAAAAATAGTAAGGATAAACATAAATTTAACACTTTCATGC  900
      ||||||| ||||||||||||||||| ||||| ||||||||||||||||||
seq2  AAAAAAATAGAAAAATAGTAAGGAT-AACAT-AATTTAACACTTTCATGC  893

seq1  TGTTTGAGGTAATAGAAATCTGTACAGTCGTCATACAAAAAGATGAAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGGTAATAGAAATCTGTACAGTCGTCATACAAAAAGATGAAAGT  943

seq1  TTCTTAAAATATTAAAAACCAATAAAATGTATGTTTTAGTTTATATCACT  1000
      ||||||||||||| |||||||   ||||||||||||||||||||||||||
seq2  TTCTTAAAATATT-AAAACCA--TAAATGTATGTTTTAGTTTATATCACT  990

seq1  TAATGTA-TTTCTAATAAAATAAAAATGAAGTTAGTGAGATAAAACTGTA  1049
      ||||||| |||||||||||||||||||| |||||||||||| ||||||||
seq2  TAATGTATTTTCTAATAAAATAAAAATG-AGTTAGTGAGAT-AAACTGTA  1038

seq1  TCTAAACTG-TTATG-CACATGTCAATTTTGCTCAATATAGCCTGATAAC  1097
      |   ||||| ||||| |||||||||| ||||||| |||||| ||||||||
seq2  TTCTAACTGTTTATGCCACATGTCAA-TTTGCTC-ATATAG-CTGATAAC  1085

seq1  TCAAAT  1103
      ||||||
seq2  TCAAAT  1091


seq1: chr3_12992100_12992903
seq2: B6Ng01-284A19.g_65_868 (reverse)

seq1  TCTTTCTCTCCCTCCCTCCCCTCTTTCTCATTTCCTTCAGAGTGAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTCCCTCCCTCCCCTCTTTCTCATTTCCTTCAGAGTGAAAATC  50

seq1  ATTTCTGTTGCTAACATTATATTCAGATGTTTTCTATTCCTTTTCTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTGCTAACATTATATTCAGATGTTTTCTATTCCTTTTCTGTCC  100

seq1  ATTTGAAAATGTCCTGGAATAAGAATGAATGAATGAATGAATGAATGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAATGTCCTGGAATAAGAATGAATGAATGAATGAATGAATGAAT  150

seq1  GAATGAATGAACAATTTGTGTTAAAAAAGAATTAGCATACTTTATTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATGAACAATTTGTGTTAAAAAAGAATTAGCATACTTTATTATCA  200

seq1  TTGGTTTTTACTTGCACTAAGCATAGTCATTTCAGTAGAACAGTAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTACTTGCACTAAGCATAGTCATTTCAGTAGAACAGTAAAATA  250

seq1  TGATAATTGTAATTTTCCTTTCATAGTTCTGTCTATAATACTCTCAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTGTAATTTTCCTTTCATAGTTCTGTCTATAATACTCTCAAACT  300

seq1  ACACCAAAGGTTATTGAATCCAAAGCAATCTTAAAGAAAAACAATGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAAGGTTATTGAATCCAAAGCAATCTTAAAGAAAAACAATGTTAA  350

seq1  AGCCATCAAAATACCAGATCTCAAAATATACATCAGATTATCCATATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCAAAATACCAGATCTCAAAATATACATCAGATTATCCATATATT  400

seq1  AGTTGCATGAAGTTAACATAAAAACACACACATAGAATTCATTTTTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCATGAAGTTAACATAAAAACACACACATAGAATTCATTTTTAGTA  450

seq1  CACAAAATGTAACAGAATAGGTAATCCAACAATAAACTGACACAGCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATGTAACAGAATAGGTAATCCAACAATAAACTGACACAGCTACA  500

seq1  CACTTTTAATTCTCTACGTGTTGGCACATTTTCTGTTACAGAGAAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAATTCTCTACGTGTTGGCACATTTTCTGTTACAGAGAAATTAT  550

seq1  ACCTTTATCAAACAGTGTGGAGAAAATGGGATAAGAACACTTAAAGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATCAAACAGTGTGGAGAAAATGGGATAAGAACACTTAAAGAATG  600

seq1  AACTACATCACCCTCTATAAAAATCATTTAAATATGTACATGTGAGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATCACCCTCTATAAAAATCATTTAAATATGTACATGTGAGATTG  650

seq1  TGTGTGTTTGTGTGTGTGTGGGCCTACAACTGAAAATCAATAGAATTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTGTGTGTGTGTGGGCCTACAACTGAAAATCAATAGAATTAAT  700

seq1  ATAAGGAAAGTGGATGCCTAATTTTTTGAATATGACTCAAGGAATGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAAAGTGGATGCCTAATTTTTTGAATATGACTCAAGGAATGAGAA  750

seq1  TAATACATGCAGAACATGTATTATCCCGACCTAGTATCTCGCCAGCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATGCAGAACATGTATTATCCCGACCTAGTATCTCGCCAGCAAGA  800

seq1  ATTC  804
      ||||
seq2  ATTC  804


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