BAC Information

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BAC

Clone NameB6Ng01-284D11
Chromosome3 (Build37)
Map Location 125,224,768 - 125,335,050
singlet/doubletdoublet
Overlap geneNdst4
Upstream gene1700003H04Rik, LOC668817, LOC668820
Downstream geneUgt8a, Arsj, Camk2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284D11.bB6Ng01-284D11.g
ACCGA082976GA082977
length633694
definitionB6Ng01-284D11.b B6Ng01-284D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,334,421 - 125,335,050)(125,224,768 - 125,225,461)
sequence
gaattctcctccttctgcccccatagtggtaaactgcagttagatagtaa
cacacttggctcttttaaattcttgtcattccagatactgctcagtagaa
aagaggtgacttgctccagacatctaggtgcaagggttatatttttatat
ctgtccctaatatttctcctttgttactcagaatctgattttcatttcac
attaaggtattaagctatctgtaataaaattaaaatggagaaaaaatctg
gaaagaacatattgctcagcaaaatgggggcaaaaaaagcaaggcccttc
aagagtaggtaaaaaggtccctgaaggcaaatgttctcattcactttaca
cagtgctcagcaatcatagggagccagtgtggtccatgatctcacagctc
catctgctaagaacaaagtaagattaaccgtcaaattcccaggagaggca
agaaaaaattggactttgcaataatggggacaatgaagcaattgtatgtg
aattaggtttacattcttttcttttcttttcttttcttttcttctcttct
cttctcttctcttctcttatcttatcttatcttctcttctcttctcttct
cttctcttttccctttccccttccccttccctt

gaattctccctagtgcctttcctttacaatgttttccctgtgggcctcag
taggggtgaagaaaatgttccgccagagtcctgcaacccagggaatagta
aatgggggtcatacaatatgagccatgacctccacatcctgcactttagg
gattccattttcaacttgtattccaagctagaagtgagtctttccattaa
gatatattttaaagcctccatagaatccactgcatgaaagacaaggtgat
gcccagaacaagctacagatacaggatacttgctttacagacagaaaatt
ggagtgtgaatcatcaccattgcatccagcaacacacacatgaagtttaa
tagacagtggcaaaaattcttagacttaaagacatagtagaaagcagagc
agaggtaaaaattggtgctagaaaagattaatctccaggtctgctaagta
taggattccagtccaaagatgatcaattccatcgatcaaactacttaaag
ttattaccactgaaggataaccacagatgacaattgaaacataccatatt
attctatgtatcatagatgacatatttctaatgtagtttattacttatag
taaacattttattcctcttcaaaatgaaaaaatgtttaacactcagaact
ggaaaacacagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125334421_125335050
seq2: B6Ng01-284D11.b_48_680 (reverse)

seq1  AAGGGAA-GGGAAGGG--AAGGGAAAAGAGAAGAGAAGAGAAGAGAAGAG  47
      ||||||| ||||||||  ||||||||||||||||||||||||||||||||
seq2  AAGGGAAGGGGAAGGGGAAAGGGAAAAGAGAAGAGAAGAGAAGAGAAGAG  50

seq1  AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAAAAGAA  97
      |||| |||| |||| |||||||||||||||||||||||||||||||||||
seq2  AAGATAAGATAAGATAAGAGAAGAGAAGAGAAGAGAAGAGAAGAAAAGAA  100

seq1  AAGAAAAGAAAAGAAAAGAATGTAAACCTAATTCACATACAATTGCTTCA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAGAAAAGAATGTAAACCTAATTCACATACAATTGCTTCA  150

seq1  TTGTCCCCATTATTGCAAAGTCCAATTTTTTCTTGCCTCTCCTGGGAATT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCCATTATTGCAAAGTCCAATTTTTTCTTGCCTCTCCTGGGAATT  200

seq1  TGACGGTTAATCTTACTTTGTTCTTAGCAGATGGAGCTGTGAGATCATGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGTTAATCTTACTTTGTTCTTAGCAGATGGAGCTGTGAGATCATGG  250

seq1  ACCACACTGGCTCCCTATGATTGCTGAGCACTGTGTAAAGTGAATGAGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACTGGCTCCCTATGATTGCTGAGCACTGTGTAAAGTGAATGAGAA  300

seq1  CATTTGCCTTCAGGGACCTTTTTACCTACTCTTGAAGGGCCTTGCTTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCTTCAGGGACCTTTTTACCTACTCTTGAAGGGCCTTGCTTTTT  350

seq1  TTGCCCCCATTTTGCTGAGCAATATGTTCTTTCCAGATTTTTTCTCCATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCCATTTTGCTGAGCAATATGTTCTTTCCAGATTTTTTCTCCATT  400

seq1  TTAATTTTATTACAGATAGCTTAATACCTTAATGTGAAATGAAAATCAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTATTACAGATAGCTTAATACCTTAATGTGAAATGAAAATCAGA  450

seq1  TTCTGAGTAACAAAGGAGAAATATTAGGGACAGATATAAAAATATAACCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTAACAAAGGAGAAATATTAGGGACAGATATAAAAATATAACCC  500

seq1  TTGCACCTAGATGTCTGGAGCAAGTCACCTCTTTTCTACTGAGCAGTATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCTAGATGTCTGGAGCAAGTCACCTCTTTTCTACTGAGCAGTATC  550

seq1  TGGAATGACAAGAATTTAAAAGAGCCAAGTGTGTTACTATCTAACTGCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGACAAGAATTTAAAAGAGCCAAGTGTGTTACTATCTAACTGCAG  600

seq1  TTTACCACTATGGGGGCAGAAGGAGGAGAATTC  630
      |||||||||||||||||||||||||||||||||
seq2  TTTACCACTATGGGGGCAGAAGGAGGAGAATTC  633


seq1: chr3_125224768_125225461
seq2: B6Ng01-284D11.g_66_759

seq1  GAATTCTCCCTAGTGCCTTTCCTTTACAATGTTTTCCCTGTGGGCCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTAGTGCCTTTCCTTTACAATGTTTTCCCTGTGGGCCTCAG  50

seq1  TAGGGGTGAAGAAAATGTTCCGCCAGAGTCCTGCAACCCAGGGAATAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGTGAAGAAAATGTTCCGCCAGAGTCCTGCAACCCAGGGAATAGTA  100

seq1  AATGGGGGTCATACAATATGAGCCATGACCTCCACATCCTGCACTTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGTCATACAATATGAGCCATGACCTCCACATCCTGCACTTTAGG  150

seq1  GATTCCATTTTCAACTTGTATTCCAAGCTAGAAGTGAGTCTTTCCATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCATTTTCAACTTGTATTCCAAGCTAGAAGTGAGTCTTTCCATTAA  200

seq1  GATATATTTTAAAGCCTCCATAGAATCCACTGCATGAAAGACAAGGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTTTAAAGCCTCCATAGAATCCACTGCATGAAAGACAAGGTGAT  250

seq1  GCCCAGAACAAGCTACAGATACAGGATACTTGCTTTACAGACAGAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAACAAGCTACAGATACAGGATACTTGCTTTACAGACAGAAAATT  300

seq1  GGAGTGTGAATCATCACCATTGCATCCAGCAACACACACATGAAGTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGAATCATCACCATTGCATCCAGCAACACACACATGAAGTTTAA  350

seq1  TAGACAGTGGCAAAAATTCTTAGACTTAAAGACATAGTAGAAAGCAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGTGGCAAAAATTCTTAGACTTAAAGACATAGTAGAAAGCAGAGC  400

seq1  AGAGGTAAAAATTGGTGCTAGAAAAGATTAATCTCCAGGTCTGCTAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAAAAATTGGTGCTAGAAAAGATTAATCTCCAGGTCTGCTAAGTA  450

seq1  TAGGATTCCAGTCCAAAGATGATCAATTCCATCGATCAAACTACTTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTCCAGTCCAAAGATGATCAATTCCATCGATCAAACTACTTAAAG  500

seq1  TTATTACCACTGAAGGATAACCACAGATGACAATTGAAACATACCATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACCACTGAAGGATAACCACAGATGACAATTGAAACATACCATATT  550

seq1  ATTCTATGTATCATAGATGACATATTTCTAATGTAGTTTATTACTTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATGTATCATAGATGACATATTTCTAATGTAGTTTATTACTTATAG  600

seq1  TAAACATTTTATTCCTCTTCAAAATGAAAAAATGTTTAACACTCAGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTTATTCCTCTTCAAAATGAAAAAATGTTTAACACTCAGAACT  650

seq1  GGAAAACACAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACACAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  694


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