BAC Information

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BAC

Clone NameB6Ng01-284K07
Chromosome3 (Build37)
Map Location 91,031,125 - 91,031,950
singlet/doubletsinglet
Overlap genenone
Upstream geneJtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284K07.bB6Ng01-284K07.g
ACCGA083293GA083294
length1,154826
definitionB6Ng01-284K07.b B6Ng01-284K07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacgtgcatacttaaacataacataagcaatctacaataaacca
gtagacaacatcaaactaaatggagagaagcttgaagtaatcccactaaa
atcagggactaaacaaggatgccaactttctccctacctattcaatatag
tacttgaagttctagtcagagcaattcaacaacaaaaggagatcaagggg
atacaaattggaaagaaagaagtcaaaatatcgctatttgcagattatat
gatagtatgtgtaaatgaccccaaaaatttcaccagagaactcctaaacc
tgataaacagattgagggcattagctggatataaaattaactcaaataaa
tcagtaggctttctctacataaaagataaacggactgagaaagaaattag
ggaagaaacacacttcacaatagtcacaaataatatataataccttggtg
tgactctaaccaaggaagtaaaagatctgtatggtaagaatttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaggatcttacatg
ctcatgaattggcaggattaatatagtaaaaatgactatccttcaaaagc
aaactacagatttaatgcaatccccatcaaaattccaactcaattcttca
ctgagatagaaagggaaatttgcaaattcatctggaaaaataaaacacgt
aggatagccaaaactattctcaactgtaaaggaacctctgatggaatcac
catgcctgacattaagctttactacagagaaattgtgataaaacctgcat
ggtactggtacagctacagacaggtagatcaatggaatagaatttaagac
ccagaaatgaatccacacagctatggtcacttgatctttgaaaagggagc
ttaaaccatccagtgggataaaaggacagcattttcacaaatggtgctgg
atctactggggatatcatgtagagatgcgaatgactatctatttctgtac
aagctcagtctactgatcaagacattcacatagacagagacactggaatt
atagaggagaaggtaagggaagcttcgagattgggcacagttaagtccta
cgaacgcatgtctgcgtagatcagaatggcatgacctttaatccaagctc
tgta
gaattcaaagagttgttgagaagtgaatttccacaatttcgtgcggtagg
tcttcttcccgagtttggagtttatgtctgaaacaattcttttcaatcag
ggtgactggtgtgatcatatttagttatcaatacttaggaaactgcagct
gaaatcccatgttctagacagtggtatagaattggttacctgtgacacag
agggaccaactgaaaaacacagttaaattcagttccctaattgcctggat
gacagactggttgcagttttcttgtgtgttttttgttttattttttgttt
gttttatcattcatttttgataaagcaaagcagagtggttatggtaaaaa
tgatggacttttcactgtaagatggaaacatttgagctaaggccatgtcc
tcatataaggacatattccaagatggtgattgactgggcagtagaggaac
actaagcttcaaaggggacttgggatagtcctaggtggttccttctagag
atctagggtagaaaattcaaggaaaaggggcacaaggaaagaacattcca
agacacttagtattcgctaatcaaacctgaggaaagagaaacatgggtgg
agaaaagtggctcataggctgcaagctttattatatctctaaggtctgtg
attagaaccttagcattccttacatgcccttaacatagaaattttctctt
ttggaacaatattggtgatgtggatattacttctatttttaatgtgtaat
ttttaatttatgtgtatggttttttgcctgagatatatgtattttcagta
agtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91031125_91031950
seq2: B6Ng01-284K07.g_63_888 (reverse)

seq1  CACACACACACACACACACACACACTTACTGAAAATACATATATCTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACTTACTGAAAATACATATATCTCAGG  50

seq1  CAAAAAACCATACACATAAATTAAAAATTACACATTAAAAATAGAAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACCATACACATAAATTAAAAATTACACATTAAAAATAGAAGTAA  100

seq1  TATCCACATCACCAATATTGTTCCAAAAGAGAAAATTTCTATGTTAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACATCACCAATATTGTTCCAAAAGAGAAAATTTCTATGTTAAGGG  150

seq1  CATGTAAGGAATGCTAAGGTTCTAATCACAGACCTTAGAGATATAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAGGAATGCTAAGGTTCTAATCACAGACCTTAGAGATATAATAAA  200

seq1  GCTTGCAGCCTATGAGCCACTTTTCTCCACCCATGTTTCTCTTTCCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAGCCTATGAGCCACTTTTCTCCACCCATGTTTCTCTTTCCTCAG  250

seq1  GTTTGATTAGCGAATACTAAGTGTCTTGGAATGTTCTTTCCTTGTGCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTAGCGAATACTAAGTGTCTTGGAATGTTCTTTCCTTGTGCCCC  300

seq1  TTTTCCTTGAATTTTCTACCCTAGATCTCTAGAAGGAACCACCTAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGAATTTTCTACCCTAGATCTCTAGAAGGAACCACCTAGGACT  350

seq1  ATCCCAAGTCCCCTTTGAAGCTTAGTGTTCCTCTACTGCCCAGTCAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAGTCCCCTTTGAAGCTTAGTGTTCCTCTACTGCCCAGTCAATCA  400

seq1  CCATCTTGGAATATGTCCTTATATGAGGACATGGCCTTAGCTCAAATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGGAATATGTCCTTATATGAGGACATGGCCTTAGCTCAAATGTT  450

seq1  TCCATCTTACAGTGAAAAGTCCATCATTTTTACCATAACCACTCTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTACAGTGAAAAGTCCATCATTTTTACCATAACCACTCTGCTTT  500

seq1  GCTTTATCAAAAATGAATGATAAAACAAACAAAAAATAAAACAAAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATCAAAAATGAATGATAAAACAAACAAAAAATAAAACAAAAAACA  550

seq1  CACAAGAAAACTGCAACCAGTCTGTCATCCAGGCAATTAGGGAACTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAAACTGCAACCAGTCTGTCATCCAGGCAATTAGGGAACTGAAT  600

seq1  TTAACTGTGTTTTTCAGTTGGTCCCTCTGTGTCACAGGTAACCAATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTGTTTTTCAGTTGGTCCCTCTGTGTCACAGGTAACCAATTCTA  650

seq1  TACCACTGTCTAGAACATGGGATTTCAGCTGCAGTTTCCTAAGTATTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGTCTAGAACATGGGATTTCAGCTGCAGTTTCCTAAGTATTGAT  700

seq1  AACTAAATATGATCACACCAGTCACCCTGATTGAAAAGAATTGTTTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATATGATCACACCAGTCACCCTGATTGAAAAGAATTGTTTCAGA  750

seq1  CATAAACTCCAAACTCGGGAAGAAGACCTACCGCACGAAATTGTGGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTCCAAACTCGGGAAGAAGACCTACCGCACGAAATTGTGGAAAT  800

seq1  TCACTTCTCAACAACTCTTTGAATTC  826
      ||||||||||||||||||||||||||
seq2  TCACTTCTCAACAACTCTTTGAATTC  826