BAC Information

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BAC

Clone NameB6Ng01-284M06
Chromosome3 (Build37)
Map Location 156,219,808 - 156,312,272
singlet/doubletdoublet
Overlap gene4930570G19Rik, Negr1
Upstream geneEG668902, LOC624519, LOC100040901
Downstream geneLOC100041152, LOC668853, LOC546818, Zranb2, Ptger3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284M06.bB6Ng01-284M06.g
ACCGA083387GA083388
length1,0211,128
definitionB6Ng01-284M06.b B6Ng01-284M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,219,808 - 156,220,825)(156,311,134 - 156,312,272)
sequence
gaattccttttgactttttaacctatttaattatccatggttttcatgtt
tctcttttacaaaattaggagtaataattattccaaatgaaagctgccaa
ttccagtcaaaatgccgtaagtttacaaagtaagcagccctctttcgcag
acactaaagacagagaaagtgtcaaagaacaaaggaagaaggaggtagtt
ataaagacagtaaatgcacaaaataaacatgtttatattgagtaagaact
tttgacaaattatgaaatagaacaataaaatggtatacttatttgggaat
ataacattattagtttttcaccatataattgaaaacatcaaatttgatgt
ttctgttttaattcatataccatatgctcctacaaacttttgaaagtgaa
aaggatcattaagattattacatgaaagttattgcttataacccatgaaa
atatgcaatgaaatgtagttaaatctctcatcttacaagcaaaaaagaat
aaagattttagtgtttgagaatgttttttctctcatacttagatgattcc
cagttgaagttcttagattacatttgtggcatctctctggaatgtgggga
actttggggaacaacttgggcaccatccccacccaccctagcagctcata
gacctctgtgctgctgtgactcactgcttagatggaatgacaccaccact
agccaataactccgctcccttttatttgatattcatttctcaatctgcct
accctgtacgtctaatgtaagaaagacgggcacagaggcacctcttcctg
gaaggcagttaattacttaaagctgagacttgtcattttaactcagatct
aaatctcagaggtccctccccttcacctccttcaccatagccattagcaa
ataaccacacgtggggaaagcacacatagcacacagctatcaagagctgg
ccactgctgtatgggccacagcacagtacacgagggacatgatcaggagt
tcagattggggctattattac
gaattcactgtttacctctgtctcttcctaaagcattgatatcctgacat
cctataaaaacaaaacaaaacatttaaatgtattttttacggctggttta
ttttggggggaggggcgtggagctttctaaaaatttcagtgcattcctgg
gttatttttacaacttaacagcgtgtcacagcgagtgagagccacttgac
acacaaacattaggccgtattcctctccaggtcctaataatgagcttcaa
gaatttctcttgccagggtctcagaatattacgaattaatgatactgcta
gctaatacctcttcaaaagaggaagattagtttaaagctgctatgcaaag
aattatacaataaggctggaaatgaaggatctggattgcatgttttctca
gtttttttttttttgttttgttttgttttgttctgttttgtttagagaaa
aaggactgcacaagacaatttatctatgtatttgaaataatggccatcac
ctctccttttgttttatcctcatttaattttaccctcaaaataattttac
taaaaataccacagatatcgaatgttcactgctacccaattgtcttctct
gactttcatgagtcactcctaatgccatgttattctgttaactgcttgct
tctcctctgtgtctcaggcacccattgggtgaccgaatcccaattagctc
ttctcagaggcatctgtcagggcccttccctgtcctctactgattctgtt
tgacagtttgtatgaaccagcagctgaatagggacagcagaagcttgaag
cctcttacagcttagaccgtgtctctcagagttagcttcctgtcttttcc
caaggctaaaagaattcttaaggtcccagcattactttgctcattagacc
ttttggctccattttcttatttttccttccagatgtatcttatgggtaaa
atttttcagatgcatgaaagagtgtagtggcaatgtattaggtagatatt
tctgagttcagcattgcattgtgtaatatcccattttctcagcttccttg
ctgcaataaaatgcttgatatccttctccatgcctattgctactatatgg
tgcttagctaagttgcagccttgcaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_156219808_156220825
seq2: B6Ng01-284M06.b_43_1063

seq1  GAATTCCTTTTGACTTTTTAACCTATTTAATTATCGATGGTTTTCATGTT  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAATTCCTTTTGACTTTTTAACCTATTTAATTATCCATGGTTTTCATGTT  50

seq1  TCTCTTTTACAAAATTAGGAGTAATAATTATTCCAAATGAAAGCTGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTACAAAATTAGGAGTAATAATTATTCCAAATGAAAGCTGCCAA  100

seq1  TTCCAGTCAAAATGCCGTAAGTTTACAAAGTAAGCAGCCCTCTTTCACAG  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCCAGTCAAAATGCCGTAAGTTTACAAAGTAAGCAGCCCTCTTTCGCAG  150

seq1  ACACGAAAGACAGAGAAAGTGTCAAAGAACAAAGGAAGAAGGAGGTAGTT  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAGACAGAGAAAGTGTCAAAGAACAAAGGAAGAAGGAGGTAGTT  200

seq1  ATAAAGACAGTAAATGCACAAAATAAACATGTTTATATTGAGTAAGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACAGTAAATGCACAAAATAAACATGTTTATATTGAGTAAGAACT  250

seq1  TTTGACAAATTATGAAATAGAACAATAAAATGGTATACTTATTTGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAAATTATGAAATAGAACAATAAAATGGTATACTTATTTGGGAAT  300

seq1  ATAACATTATTAGTTTTTCACCATATAATTGAAAACATCAAATTTGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTATTAGTTTTTCACCATATAATTGAAAACATCAAATTTGATGT  350

seq1  TTCTGTTTTAATTCATATACCAGATGCTCCTACAAACTTTTGAAAGTGAA  400
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCTGTTTTAATTCATATACCATATGCTCCTACAAACTTTTGAAAGTGAA  400

seq1  AAGGATCATTAAGATTATTACATGAAAGTTATTGCTTATAACCCATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCATTAAGATTATTACATGAAAGTTATTGCTTATAACCCATGAAA  450

seq1  ATATGCAATGAAATGTAGTTAAATCTCTCATCTTACAAGCAAAAAAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAATGAAATGTAGTTAAATCTCTCATCTTACAAGCAAAAAAGAAT  500

seq1  AAAGATTTTAGTGTTTGAGAATGTTTTTTCTCTCATACTTAGATGATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTAGTGTTTGAGAATGTTTTTTCTCTCATACTTAGATGATTCC  550

seq1  CAGTTGAAGTTCTTAGATTACATTTGTGGCATCTCTCTGGAATGTGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAGTTCTTAGATTACATTTGTGGCATCTCTCTGGAATGTGGGGA  600

seq1  ACTTTGGGGAACAACTTGGGCACCATCCCCACCCACCCTAGCAGCTCAGA  650
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTTTGGGGAACAACTTGGGCACCATCCCCACCCACCCTAGCAGCTCATA  650

seq1  GACCTCTGTGCTGCTGTGACTCACTGCTTAGATGGAATGACACCACCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGTGCTGCTGTGACTCACTGCTTAGATGGAATGACACCACCACT  700

seq1  AGCCAATAACTCCCCTCCCTTTTATTTGATATTCATTTCTCAGTCTGCCT  750
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  AGCCAATAACTCCGCTCCCTTTTATTTGATATTCATTTCTCAATCTGCCT  750

seq1  ACCCTGTAGGTCTAATGTAAGAAAGACGGGCACAGAGGCACCTCTTCCTG  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTACGTCTAATGTAAGAAAGACGGGCACAGAGGCACCTCTTCCTG  800

seq1  GAAGGCAGTTAATTACTTAAAGCTGAGACTTGTCATTTTAACTCTGATCT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAGGCAGTTAATTACTTAAAGCTGAGACTTGTCATTTTAACTCAGATCT  850

seq1  AAATCTAAGAGGTCCCTCCCCTTCACCTCCTTCACCATAGCCATTAGCAA  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCAGAGGTCCCTCCCCTTCACCTCCTTCACCATAGCCATTAGCAA  900

seq1  AGAACCACACGTGGGGAAAGCACACATAGCACACA-CTAAGAAGAGCTGG  949
      | ||||||||||||||||||||||||||||||||| |||  |||||||||
seq2  ATAACCACACGTGGGGAAAGCACACATAGCACACAGCTATCAAGAGCTGG  950

seq1  CCACAG-TGTAT-GGCCACAGCACAGTACACGAGGGACATGATAAGGAGT  997
      |||| | ||||| |||||||||||||||||||||||||||||| ||||||
seq2  CCACTGCTGTATGGGCCACAGCACAGTACACGAGGGACATGATCAGGAGT  1000

seq1  TCAG-TTGGGGCTAATTATTAC  1018
      |||| |||||||| ||||||||
seq2  TCAGATTGGGGCT-ATTATTAC  1021

seq1: chr3_156311134_156312272
seq2: B6Ng01-284M06.g_66_1193 (reverse)

seq1  CATTGCAA-GCTGCAACTTGAGCTTAAACACACCATATAAGTAGCATATG  49
      |||||||| |||||||||| ||||   |  |||||||| |||||||   |
seq2  CATTGCAAGGCTGCAACTT-AGCT---AAGCACCATAT-AGTAGCAATAG  45

seq1  GCATGGGAGAAAGGAATAATCAAGCATTTTTATTGCAGCATAGGAAAGGC  99
      |||| |||| |||||   |||||||| ||||||||||||| |||||  ||
seq2  GCAT-GGAG-AAGGA--TATCAAGCA-TTTTATTGCAGCA-AGGAA--GC  87

seq1  TGAGAAAATGGGAATATTTACAC-ATGCAATGCCTGAACCTCCAGGAAAT  148
      |||||||||||| ||| |||||| |||||||| ||||||   |||  || 
seq2  TGAGAAAATGGG-ATA-TTACACAATGCAATG-CTGAAC--TCAG--AAA  130

seq1  TATCTACCTAATACATTTCCACTACACTCTTTCATGCATCTG-AAAATTT  197
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  TATCTACCTAATACATTGCCACTACACTCTTTCATGCATCTGAAAAATTT  180

seq1  TA-CCATAGGATACATCTGGAAGG-AAAATAAG-AAATGGAGCC-AAAGG  243
      || ||||| ||||||||||||||| |||||||| |||||||||| |||||
seq2  TACCCATAAGATACATCTGGAAGGAAAAATAAGAAAATGGAGCCAAAAGG  230

seq1  TCTAATGAGC-AAGTAATGCTGGGACCTT-AGAATTCTTTTAGCCTTGGG  291
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  TCTAATGAGCAAAGTAATGCTGGGACCTTAAGAATTCTTTTAGCCTTGGG  280

seq1  AAAAGACAGG-AGCTAACTCTGAGAGACACGGTCTAAGCTGTAAGAGGCT  340
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAGGAAGCTAACTCTGAGAGACACGGTCTAAGCTGTAAGAGGCT  330

seq1  TCAAGCTTCTGCTGTCCCTATTCAGCCTGCTGGTTCATACAAACTGTCAA  390
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAAGCTTCTGCTGTCCCTATTCAG-CTGCTGGTTCATACAAACTGTCAA  379

seq1  ACAGAATCAGTAGAGGACAGGGAAGGGCCCTGACAGATGCCTCTGAGAAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCAGTAGAGGACAGGGAAGGGCCCTGACAGATGCCTCTGAGAAG  429

seq1  AGCTAATTGGGATTCGGTCACCCAATGGGTGCCTGAGACACAGAGGAGAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATTGGGATTCGGTCACCCAATGGGTGCCTGAGACACAGAGGAGAA  479

seq1  GCAAGCAGTTAACAGAATAACATGGCATTAGGAGTGACTCATGAAAGTCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGTTAACAGAATAACATGGCATTAGGAGTGACTCATGAAAGTCA  529

seq1  GAGAAGACAATTGGGTAGCAGTGAACATTCGATATCTGTGGTATTTTTAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACAATTGGGTAGCAGTGAACATTCGATATCTGTGGTATTTTTAG  579

seq1  TAAAATTATTTTGAGGGTAAAATTAAATGAGGATAAAACAAAAGGAGAGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATTTTGAGGGTAAAATTAAATGAGGATAAAACAAAAGGAGAGG  629

seq1  TGATGGCCATTATTTCAAATACATAGATAAATTGTCTTCTGCAGTCCTTT  690
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGATGGCCATTATTTCAAATACATAGATAAATTGTCTTGTGCAGTCCTTT  679

seq1  TTCTCTAAACAAAACAGAACAAAACAAAACAAAACAAAAAAAAAAAAACT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAACAAAACAGAACAAAACAAAACAAAACAAAAAAAAAAAAACT  729

seq1  GAGAAAACATGCAATCCAGATCCTTCATTTCCAGCCTTATTGTATAATTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACATGCAATCCAGATCCTTCATTTCCAGCCTTATTGTATAATTC  779

seq1  TTTGCATAGCAGCTTTAAACTAATCTTCCTCTTTTGAAGAGGTATTAGCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATAGCAGCTTTAAACTAATCTTCCTCTTTTGAAGAGGTATTAGCT  829

seq1  AGCAGTATCATTAATTCGTAATATTCTGAGACCCTGGCAAGAGAAATTCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTATCATTAATTCGTAATATTCTGAGACCCTGGCAAGAGAAATTCT  879

seq1  TGAAGCTCATTATTAGGACCTGGAGAGGAATACGGCCTAATGTTTGTGTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCATTATTAGGACCTGGAGAGGAATACGGCCTAATGTTTGTGTG  929

seq1  TCAAGTGGCTCTCACTCGCTGTGACACGCTGTTAAGTTGTAAAAATAACC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGGCTCTCACTCGCTGTGACACGCTGTTAAGTTGTAAAAATAACC  979

seq1  CAGGAATGCACTGAAATTTTTAGAAAGCTTGATGCCCCTCCCCCCAAAAT  1040
      |||||||||||||||||||||||||||||  | |||||||||||||||||
seq2  CAGGAATGCACTGAAATTTTTAGAAAGCTCCACGCCCCTCCCCCCAAAAT  1029

seq1  AAACCAGCCGTAAAAAATACATTTAAATGCTTTGTTTTGTTTTTCTAGGA  1090
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  AAACCAGCCGTAAAAAATACATTTAAATGTTTTGTTTTGTTTTTATAGGA  1079

seq1  TGTCAGGATATCAATGCTTTAGGAAGAGACAGAGGTAAACAGTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGATATCAATGCTTTAGGAAGAGACAGAGGTAAACAGTGAATTC  1128