BAC Information

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BAC

Clone NameB6Ng01-284O10
Chromosome3 (Build37)
Map Location 136,568,911 - 136,704,625
singlet/doubletdoublet
Overlap genePpp3ca, LOC668870
Upstream geneLOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
Downstream geneLOC100039447, Emcn, EG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284O10.bB6Ng01-284O10.g
ACCGA083489GA083490
length1,117964
definitionB6Ng01-284O10.b B6Ng01-284O10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,568,911 - 136,570,025)(136,704,016 - 136,704,625)
sequence
gaattcatgagagtccttaacttattttgagattctctacgataattcag
ttacctccaaacactagatttttctccaaagacagagaggtgtgtgaggt
taaaagtagaaggacgatgactgggagccctggtgaagcacctgaaacgc
atggaagagacaaggatgtggcaagagtcggaacacgctagagcaaactt
tcttcatgtatattagtacgtcctaccctgtgcagggtccttgggattcc
tcagtgccttggagaaagcagaatcttcatagagggactggggtggaaag
agacggtgtcatcggaataagacataatgaataaagaagaaagacaaaga
tagaagtagatgctttgattaatttaaatgaagagccattgaacagcact
ttagtaaaacaggagatggtggccctttctaaaagttagtgtttggatag
catgatttagtattttagtgtatgaactctgataacagctaaaagcacaa
agtgtctattgaccatgtacttggataaatagtatagactatatacatat
ataactgatatataattgatatcattaataaatatagagatatagaattt
atatatgtgtatatatatgtatgtatatatatattacatatatatgcatt
aaacacacaatttactgctagctctagtatttctcttttctacagcttct
ctcatcccgtttacctctcctcataaactgttttcagacacctcattgca
aaagaataggattgggaggaaagtggatgtagaaagaaaaaaataattat
taagactcttaaagatatttttagatgttaactaagcaaatgtgcctaat
gtcacagtttgcatgtgtctacattctagatgcttcccacattatagccg
caagtactatggttaacttttccatggatagaggtttcctcttgaagaga
atgagcatgtttcataaatggcccagaactttttaactaagattactttt
ttttttttttaactaaagatactaaccaagattctgaatcgtaacagcag
tacagacccttatgcaacgtttctttttcccttacttctgttctcacctg
tgaagcagctttctacc
gaattcaagatagcataggcaacacttaaattttgagggcagcgtgggct
acatagtgagatactataaaaatcaaagaatgttcctattatcactctag
aatatctagaatgcataaaataaaacttcacaattcaaacaccaaaacta
aagaggcttttatctgaacagaaaactcctaaaataacaaatacagatgg
ctaataaataattttaaatgtggttaaaatatctatatctagctttctga
gaaatgcaaagttaaattactttgatgtgctaattcactccagtcaggac
agctaacatcaagaaaacaaatggaagcaaatgttggtgaggatgtgctg
gtgggtctcacacacgctattgtctcgccagcaagaacacacgcgtgaga
aaccagatccttctgcagcaactttattacaccagtttcaacatgaagag
gaagacctcaagcaccaaaaaggcgctgcttatatacaccttagtgtggc
gtgtccacacctgattggctgctctcccagagcctcatcaccacgccctg
ggatgggccgtgacttggcacgaaaatactctcccacatgcgcacattgc
ttgtttaccaattaagccacgcaggcacagcggaaaccgcttcccacagg
tgggggtggggaatgtcacccatggttggtagaagtgtaaagcagagtta
cctctatggaaatcagtaggaaggttcatcaaaaactacaagtataactc
ccatatgacatgtaccacgtacatcatatttgggccgatagtcaaagaac
tctgcatcctatacagagaggcttacatattcgtgtccattgatgctgta
ctctctctcagtagtgagaaaatggaattaatctagatgtctatcaactg
ataatggaatctggaatagggtacaagtataaagcaaagaaattatgaaa
attttagggaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_136568911_136570025
seq2: B6Ng01-284O10.b_46_1162

seq1  GAATTCATGAGAGTCCTTAACTTATTTTGAGATTCTCTACGATAATTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGAGTCCTTAACTTATTTTGAGATTCTCTACGATAATTCAG  50

seq1  TTACCTCCAAACACTAGATTTTTCTCCAAAGACAGAGAGGTGTGTGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCCAAACACTAGATTTTTCTCCAAAGACAGAGAGGTGTGTGAGGT  100

seq1  TAAAAGTAGAAGGACGATGACTGGGAGCCCTGGTGAAGCACCTGAAACGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTAGAAGGACGATGACTGGGAGCCCTGGTGAAGCACCTGAAACGC  150

seq1  ATGGAAGAGACAAGGATGTGGCAAGAGTCGGAACACGCTAGAGCAAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAGACAAGGATGTGGCAAGAGTCGGAACACGCTAGAGCAAACTT  200

seq1  TCTTCATGTATATTAGTACGTCCTACCCTGTGCAGGGTCCTTGGGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGTATATTAGTACGTCCTACCCTGTGCAGGGTCCTTGGGATTCC  250

seq1  TCAGTGCCTTGGAGAAAGCAGAATCTTCATAGAGGGACTGGGGTGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCCTTGGAGAAAGCAGAATCTTCATAGAGGGACTGGGGTGGAAAG  300

seq1  AGACGGTGTCATCGGAATAAGACATAATGAATAAAGAAGAAAGACAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGTGTCATCGGAATAAGACATAATGAATAAAGAAGAAAGACAAAGA  350

seq1  TAGAAGTAGATGCTTTGATTAATTTAAATGAAGAGCCATTGAACAGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAGATGCTTTGATTAATTTAAATGAAGAGCCATTGAACAGCACT  400

seq1  TTAGTAAAACAGGAGATGGTGGCCCTTTCTAAAAGTTAGTGTTTGGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAAACAGGAGATGGTGGCCCTTTCTAAAAGTTAGTGTTTGGATAG  450

seq1  CATGATTTAGTATTTTAGTGTATGAACTCTGATAACAGCTAAAAGCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTAGTATTTTAGTGTATGAACTCTGATAACAGCTAAAAGCACAA  500

seq1  AGTGTCTATTGACCATGTACTTGGATAAATAGTATAGACTATATACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTATTGACCATGTACTTGGATAAATAGTATAGACTATATACATAT  550

seq1  ATAACTGATATATAATTGATATCATTAATAAATATAGAGATATAGAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGATATATAATTGATATCATTAATAAATATAGAGATATAGAATTT  600

seq1  ATATATGTGTATATATATGTATGTATATATATATTACATATATATGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGTATATATATGTATGTATATATATATTACATATATATGCATT  650

seq1  AAACACACAATTTACTGCTAGCTCTAGTATTTCTCTTTTCTACAGCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACAATTTACTGCTAGCTCTAGTATTTCTCTTTTCTACAGCTTCT  700

seq1  CTCATCCCGTTTACCTCTCCTCATAAACTGTTTTCAGACACCTCATTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCGTTTACCTCTCCTCATAAACTGTTTTCAGACACCTCATTGCA  750

seq1  AAAGAATAGGATTGGGAGGAAAGTGGATGTAGAAGGAAAAAAATAATTAT  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAGAATAGGATTGGGAGGAAAGTGGATGTAGAAAGAAAAAAATAATTAT  800

seq1  TAAGACTCTTAAAGATATTTTTAGATGTTAACTAAGCAAATGTGCCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTCTTAAAGATATTTTTAGATGTTAACTAAGCAAATGTGCCTAAT  850

seq1  GTCACAGTTTGTAGGTGTCTAGATTCTAGATGCTTCCCACATTATAGCCT  900
      ||||||||||| | ||||||| ||||||||||||||||||||||||||| 
seq2  GTCACAGTTTGCATGTGTCTACATTCTAGATGCTTCCCACATTATAGCCG  900

seq1  CAGGTACTATGGTTAACTTTTCCATGGTTAG-TGTTTCCTCTTAAA---A  946
      || |||||||||||||||||||||||| |||  |||||||||| ||   |
seq2  CAAGTACTATGGTTAACTTTTCCATGGATAGAGGTTTCCTCTTGAAGAGA  950

seq1  AATAACAT-TTTCATAAATGGCCCAG-ACTTTTTAACTAAAGATTAC--T  992
      |  | ||| ||||||||||||||||| ||||||||||| ||||||||  |
seq2  ATGAGCATGTTTCATAAATGGCCCAGAACTTTTTAACT-AAGATTACTTT  999

seq1  TTTTTTTTTTTAACTAAAGATTACTAACCAAAGATTCTGAATCGTAAACA  1042
      |||||||||||||||||||| |||||||| ||||||||||||||| ||||
seq2  TTTTTTTTTTTAACTAAAGA-TACTAACC-AAGATTCTGAATCGT-AACA  1046

seq1  GCAGTACAGACCCTTATGCCAACGTTTC-TTTTCCCTACCTTCCTGTTCT  1091
      |||||||||||||||||| ||||||||| ||||||||  ||| |||||||
seq2  GCAGTACAGACCCTTATG-CAACGTTTCTTTTTCCCTTACTT-CTGTTCT  1094

seq1  CA-CTGTGAAGGCAGCCTTTCTACC  1115
      || ||||||| |||| |||||||||
seq2  CACCTGTGAA-GCAG-CTTTCTACC  1117

seq1: chr3_136704016_136704625
seq2: B6Ng01-284O10.g_66_675 (reverse)

seq1  TGGTAAACAAGCAATGTGCGCATGTGGGAGAGTATTTTCGTGCCAAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAACAAGCAATGTGCGCATGTGGGAGAGTATTTTCGTGCCAAGTCA  50

seq1  CGGCCCATCCCAGGGCGTGGTGATGAGGCTCTGGGAGAGCAGCCAATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCATCCCAGGGCGTGGTGATGAGGCTCTGGGAGAGCAGCCAATCAG  100

seq1  GTGTGGACACGCCACACTAAGGTGTATATAAGCAGCGCCTTTTTGGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGACACGCCACACTAAGGTGTATATAAGCAGCGCCTTTTTGGTGCT  150

seq1  TGAGGTCTTCCTCTTCATGTTGAAACTGGTGTAATAAAGTTGCTGCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTTCCTCTTCATGTTGAAACTGGTGTAATAAAGTTGCTGCAGAA  200

seq1  GGATCTGGTTTCTCACGCGTGTGTTCTTGCTGGCGAGACAATAGCGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGGTTTCTCACGCGTGTGTTCTTGCTGGCGAGACAATAGCGTGTG  250

seq1  TGAGACCCACCAGCACATCCTCACCAACATTTGCTTCCATTTGTTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCCACCAGCACATCCTCACCAACATTTGCTTCCATTTGTTTTCTT  300

seq1  GATGTTAGCTGTCCTGACTGGAGTGAATTAGCACATCAAAGTAATTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGCTGTCCTGACTGGAGTGAATTAGCACATCAAAGTAATTTAAC  350

seq1  TTTGCATTTCTCAGAAAGCTAGATATAGATATTTTAACCACATTTAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTCTCAGAAAGCTAGATATAGATATTTTAACCACATTTAAAAT  400

seq1  TATTTATTAGCCATCTGTATTTGTTATTTTAGGAGTTTTCTGTTCAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTAGCCATCTGTATTTGTTATTTTAGGAGTTTTCTGTTCAGATA  450

seq1  AAAGCCTCTTTAGTTTTGGTGTTTGAATTGTGAAGTTTTATTTTATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCTTTAGTTTTGGTGTTTGAATTGTGAAGTTTTATTTTATGCAT  500

seq1  TCTAGATATTCTAGAGTGATAATAGGAACATTCTTTGATTTTTATAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATATTCTAGAGTGATAATAGGAACATTCTTTGATTTTTATAGTAT  550

seq1  CTCACTATGTAGCCCACGCTGCCCTCAAAATTTAAGTGTTGCCTATGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATGTAGCCCACGCTGCCCTCAAAATTTAAGTGTTGCCTATGCTA  600

seq1  TCTTGAATTC  610
      ||||||||||
seq2  TCTTGAATTC  610