BAC Information

Click to search

BAC

Clone NameB6Ng01-285A24
Chromosome3 (Build37)
Map Location 121,240,231 - 121,380,765
singlet/doubletdoublet
Overlap geneA730020M07Rik, 4930432M17Rik
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3
Downstream geneF3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285A24.bB6Ng01-285A24.g
ACCGA083609GA083610
length978417
definitionB6Ng01-285A24.b B6Ng01-285A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,379,802 - 121,380,765)(121,240,231 - 121,240,653)
sequence
gaattcagcatatgagacttattgtttaacaacaatccaatctgtgattt
aaaaaaaaatctagtaagcttaatgtatgttaatgtatattacattgagc
tcctatattaagccaggcaggtttgatgttttcttcttcccagaaaagta
gctattgtgtaggcaacacacaaggcttgcggtagacagagctgccattt
ggtctctgaccttcttgaagacaagggttctgtagcctccataacatcct
cttaacttcctcccaaccctttccactatacaacagccaggcagggcatt
caaggcagggcatcactcagctcagaaagggccccttgcttaactgctac
ggcaatgataggtctcgccatccagggcagtaggatagcacacatcactt
actttttgtggccactgcacttagctaagggcatgcaaaacttagtagtc
atatatatgtgccaatatatttcaattgccagtaaagaacagacccaggg
acaaaattccattattctgtttgtacctctagaaactaatccaaaacaaa
ctgtacacttatggaagctttcatttaattatatttagtttgtttcaact
attatctctatgggaacaatccagaaggaaccacagatatccacattgtg
gttaattatttttgtttttaaatacaaataaaagcagtttaaggaagtat
tattttacagggcactttctgtaaaatttgtaccagttttcaaaactaca
ccttttttttgggggggggggaattgtcctatagagtgaaaaccatgttt
ctgtttgtgtgggtatattcctgtcatgtacatcagcaaactctttgagg
taagttcccctactgtagaaaacattgaagatcagtggaaaactagtctt
ataatttagtttgtaaggttacaatggcctgcaggagttgaccactggag
cctcttcgggctaggtcctcctcacctg
caaggacagtcttagttataaggtaactaggagtccagggtggcacaggt
gagacagtctcagccttctgggttttgtttttcaagaaaacagttttcag
ctgtagcacacacagaacggaggccttgtgaagtcaccaggagaaggcac
cgtttgcaattcaggggtctgggcaacaggcaagtgttctgtgcttcaag
cccccagtgctgtgaggaagtgccttgctgttgtttaagctgcccagcct
gtggggtttggtcatggaagccctagaaaacgcaccaagcactgtttgca
atttattcatacaaattcagaacaaaggcgtcctgtgttctggctcagac
ttagtgcgcagagcaccgtgagaggtctctctctctctgtgtgtgtgtgt
gtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121379802_121380765
seq2: B6Ng01-285A24.b_45_1022 (reverse)

seq1  CAGGTGAGGA-GAACTAGACCG-AGAGGCTCAGGTGGTCAACTCCTGGCA  48
      |||||||||| || |||| ||| ||||||||  ||||||||||||||   
seq2  CAGGTGAGGAGGACCTAGCCCGAAGAGGCTCCAGTGGTCAACTCCTGCAG  50

seq1  GCCATTGTAACC-TACAAACTAAATTATAAGACTAG-TTTCCACTGATCT  96
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  GCCATTGTAACCTTACAAACTAAATTATAAGACTAGTTTTCCACTGATCT  100

seq1  TCAATG-TTTCTACAGTA-GGGAACTTA-CTC-AAGAGTTTGCTGATGTA  142
      |||||| ||||||||||| ||||||||| ||| |||||||||||||||||
seq2  TCAATGTTTTCTACAGTAGGGGAACTTACCTCAAAGAGTTTGCTGATGTA  150

seq1  CATGACA-GAATATA-CCACAC-AACAG-AACATGGTTTTCACTCTATAG  188
      ||||||| ||||||| |||||| ||||| |||||||||||||||||||||
seq2  CATGACAGGAATATACCCACACAAACAGAAACATGGTTTTCACTCTATAG  200

seq1  GACAATTCCCCCCCCCC--AAAAAAAGGTGTAGTTTTGAAAACTGGTACA  236
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  GACAATTCCCCCCCCCCCAAAAAAAAGGTGTAGTTTTGAAAACTGGTACA  250

seq1  AATTTTACAGAAAGTGCCCTGTAAAATAATACTTCCTTAAACTGCTTTTA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACAGAAAGTGCCCTGTAAAATAATACTTCCTTAAACTGCTTTTA  300

seq1  TTTGTATTTAAAAACAAAAATAATTAACCACAATGTGGATATCTGTGGTT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTAAAAACAAAAATAATTAACCACAATGTGGATATCTGTGGTT  350

seq1  CCTTCTGGATTGTTCCCATAGAGATAATAGTTGAAACAAACTAAATATAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGATTGTTCCCATAGAGATAATAGTTGAAACAAACTAAATATAA  400

seq1  TTAAATGAAAGCTTCCATAAGTGTACAGTTTGTTTTGGATTAGTTTCTAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAAAGCTTCCATAAGTGTACAGTTTGTTTTGGATTAGTTTCTAG  450

seq1  AGGTACAAACAGAATAATGGAATTTTGTCCCTGGGTCTGTTCTTTACTGG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAAACAGAATAATGGAATTTTGTCCCTGGGTCTGTTCTTTACTGG  500

seq1  CAATTGAAATATATTGGCACATATATATGACTACTAAGTTTTGCATGCCC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAAATATATTGGCACATATATATGACTACTAAGTTTTGCATGCCC  550

seq1  TTAGCTAAGTGCAGTGGCCACAAAAAGTAAGTGATGTGTGCTATCCTACT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAAGTGCAGTGGCCACAAAAAGTAAGTGATGTGTGCTATCCTACT  600

seq1  GCCCTGGATGGCGAGACCTATCATTGCCGTAGCAGTTAAGCAAGGGGCCC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGATGGCGAGACCTATCATTGCCGTAGCAGTTAAGCAAGGGGCCC  650

seq1  TTTCTGAGCTGAGTGATGCCCTGCCTTGAATGCCCTGCCTGGCTGTTGTA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCTGAGTGATGCCCTGCCTTGAATGCCCTGCCTGGCTGTTGTA  700

seq1  TAGTGGAAAGGGTTGGGAGGAAGTTAAGAGGATGTTATGGAGGCTACAGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAAAGGGTTGGGAGGAAGTTAAGAGGATGTTATGGAGGCTACAGA  750

seq1  ACCCTTGTCTTCAAGAAGGTCAGAGACCAAATGGCAGCTCTGTCTACCGC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGTCTTCAAGAAGGTCAGAGACCAAATGGCAGCTCTGTCTACCGC  800

seq1  AAGCCTTGTGTGTTGCCTACACAATAGCTACTTTTCTGGGAAGAAGAAAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGTGTGTTGCCTACACAATAGCTACTTTTCTGGGAAGAAGAAAA  850

seq1  CATCAAACCTGCCTGGCTTAATATAGGAGCTCAATGTAATATACATTAAC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAACCTGCCTGGCTTAATATAGGAGCTCAATGTAATATACATTAAC  900

seq1  ATACATTAAGCTTACTAGATTTTTTTTTAAATCACAGATTGGATTGTTGT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTAAGCTTACTAGATTTTTTTTTAAATCACAGATTGGATTGTTGT  950

seq1  TAAACAATAAGTCTCATATGCTGAATTC  964
      ||||||||||||||||||||||||||||
seq2  TAAACAATAAGTCTCATATGCTGAATTC  978

seq1: chr3_121240231_121240653
seq2: B6Ng01-285A24.g_67_489

seq1  GAATTCCAAGGACAGTCTTAGTTATAAGGTAACTAGGAGTCCAGGGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGACAGTCTTAGTTATAAGGTAACTAGGAGTCCAGGGTGGC  50

seq1  ACAGGTGAGACAGTCTCAGCCTTCTGGGTTTTGTTTTTCAAGAAAACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGAGACAGTCTCAGCCTTCTGGGTTTTGTTTTTCAAGAAAACAGT  100

seq1  TTTCAGCTGTAGCACACACAGAACGGAGGCCTTGTGAAGTCACCAGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTGTAGCACACACAGAACGGAGGCCTTGTGAAGTCACCAGGAGA  150

seq1  AGGCACCGTTTGCAATTCAGGGGTCTGGGCAACAGGCAAGTGTTCTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCGTTTGCAATTCAGGGGTCTGGGCAACAGGCAAGTGTTCTGTGC  200

seq1  TTCAAGCCCCCAGTGCTGTGAGGAAGTGCCTTGCTGTTGTTTAAGCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCCCCCAGTGCTGTGAGGAAGTGCCTTGCTGTTGTTTAAGCTGCC  250

seq1  CAGCCTGTGGGGTTTGGTCATGGAAGCCCTAGAAAACGCACCAAGCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTGGGGTTTGGTCATGGAAGCCCTAGAAAACGCACCAAGCACTG  300

seq1  TTTGCAATTTATTCATACAAATTCAGAACAAAGGCGTCCTGTGTTCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATTTATTCATACAAATTCAGAACAAAGGCGTCCTGTGTTCTGGC  350

seq1  TCAGACTTAGTGCGCAGAGCACCGTGAGAGGTCTCTCTCTCTCTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTAGTGCGCAGAGCACCGTGAGAGGTCTCTCTCTCTCTGTGTGT  400

seq1  GTGTGTGTGTGTGTGTGTGTGTG  423
      |||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTG  423