BAC Information

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BAC

Clone NameB6Ng01-285F18
Chromosome3 (Build37)
Map Location 113,755,566 - 113,894,882
singlet/doubletdoublet
Overlap geneCol11a1
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285F18.bB6Ng01-285F18.g
ACCGA083828GA083829
length1,1271,143
definitionB6Ng01-285F18.b B6Ng01-285F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,893,767 - 113,894,882)(113,755,566 - 113,756,702)
sequence
gaattcagttttagttatttttcatgtttacataaaagaaagttgttacg
tgtatcactgaaagtttctatcactacattccccaaatcagaagaaatag
gcaccatgtaatttcttttccactactgtttaggatatgatcttgcaact
cgttcattctgcaactcacatctcaacatacataagtatatcttgtgatc
caaaatatattgtgcatgatgaatataaatacaaaaggacatgaaaacca
tgaggagtgtacagaaatttaatacaaagacagacatgaaggtttattaa
aatcagtacaggtaaaaagtatgaaaatgagggcagttatatagtatata
tttgatctattttaggggaaagaaagactttcagaggatttaatgtcaga
tctgagtcctacagtgtaggtagatgagagattatctatgataagcactt
tactttctgatcattcttgtagaagcaaaaatccatagatggaatggatt
ggcatgaaatttttcagtggctcagaagtaggtcatgttcatgtacaaag
tggttgtacttgggtatgtatatatatcatggatcttgaaaattaaataa
taaggaacaaaaccatagactgagaggggtattgactaaatagtattaaa
attacctatgctgaattgaatgtgaaattagctatctccgtaaatattta
tacaaatattaagcaagtgaagtgtcttagttttacattaaaaatcgaaa
cttgtctatgaactaaatactataatttagagtatctaaagttaaaagta
aaacaaataattttttagaacatttagtattatttctgaatatttatact
taaatgtgtgtatttaggtgtttgtgtgtatatctgtatgtgcctatgat
atgtaagcacaggtacccaatcaaagcaagaagatctcctggaactggag
ttactgtcacttcacagttgaagactatgcataggactcaggctttagtc
tttaggaaaatcagtagtccttttaactatgggccattttcccttagcca
cttatattatttttggagcttgtgtgcatttttctgaggacaatgcaatg
atctctgttatgggtgccaaattttaa

gaattcaggcagctcaagcagtggaatgtagatggagggggaaagtcatg
aaagctcttaaagggcttctgcagtaagaactaatctcctgtgtcctgtt
ttcctgtttgataagcccaaagtatatagtagaagacaggaaaaactact
gagtacaattctatactgagttcgatatgcctgaaaatgtttcacagtgg
tcatggaaatagaactcaaataccaaagcatacccgagtagatttgaaaa
ttagaaatttaatttttcctgatttactttaatcagacacattaaatcat
tgcttttaatttttaaacaatttgaactaagaaagccagaagatttttct
tttgcaatatttgtacatatatgtggaaagtaacagaaaccatattatga
gcgcttaatacggtggttatggggatggcagcatgaagcaacaggcagaa
tttcaaaatgattaatcatttggttctgtagaaagaagacagagaaaaca
gaatttgttagctgagttttacttttttctaaaactgaaattcctttgta
gaaaattaatttaaattgaaacttgaaacaacaacaacaacaaaaaccaa
cagctgtgaattagggactgagtgctgatatcacacactgtcccatcaaa
gaaatttgtcagactttaagggtagagtctctacgttgaatctagcaaaa
gaaggatgctctgatcatattcatttcagatttgaaagggataactgttt
gtgtccttgtagaggccttgcatgagaagtcactggtatgaaagggaagc
tctgctccaccctgtgcattggtgatggatgctagttttgaacatagcct
gttttttatctttttatcattgaattgcagcctcttaggccccgatcatg
tctacgctggagtcttgtcagcttagagcaagaagttgaaataaaataag
tagataatatgttgtggtttctgtcacattttttcctcagagtaatttat
atcctgaatgtgatttggagcttaatttcaaaaataatatcagcatcaag
gaatcaactaaactggccttaggattatttcagaactattttcagtaacg
gtttaaggtttcttttggggtttcatctgtggggtaattgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113893767_113894882
seq2: B6Ng01-285F18.b_46_1172 (reverse)

seq1  TTAAA--TTGGCACC---ACTACAGATCA-TGCA-TGTCCTCAG--AAAT  41
      |||||  ||||||||   |  | |||||| |||| |||||||||  ||||
seq2  TTAAAATTTGGCACCCATAACAGAGATCATTGCATTGTCCTCAGAAAAAT  50

seq1  GCAC---AGCT-CAAAAATAATATTAAAGTGGCTA--GGGAAATGGCCCA  85
      ||||   |||| ||||||||||||  |||||||||  || ||||||||| 
seq2  GCACACAAGCTCCAAAAATAATAT--AAGTGGCTAAGGGAAAATGGCCC-  97

seq1  ATAGTTAAAAGGACTACTGATTTT-CTAAAGACCTAAAGCCCTGAGTCCT  134
      |||||||||||||||||||||||| ||||||| |||||| ||||||||||
seq2  ATAGTTAAAAGGACTACTGATTTTCCTAAAGA-CTAAAG-CCTGAGTCCT  145

seq1  ATGCATAGTCTTCAACTGTGAAGTGACAGTAACTCCAGTTCCAGGAGATC  184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAGTCTTCAACTGTGAAGTGACAGTAACTCCAGTTCCAGGAGATC  195

seq1  TTCTTGCTTTGATTGGGTACCTGTGCTTACATATCATAGGCACATACAGA  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTTTGATTGGGTACCTGTGCTTACATATCATAGGCACATACAGA  245

seq1  TATACACACAAACACCTAAATACACACATTTAAGTATAAATATTCAGAAA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACACAAACACCTAAATACACACATTTAAGTATAAATATTCAGAAA  295

seq1  TAATACTAAATGTTCTAAAAAATTATTTGTTTTACTTTTAACTTTAGATA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTAAATGTTCTAAAAAATTATTTGTTTTACTTTTAACTTTAGATA  345

seq1  CTCTAAATTATAGTATTTAGTTCATAGACAAGTTTCGATTTTTAATGTAA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAATTATAGTATTTAGTTCATAGACAAGTTTCGATTTTTAATGTAA  395

seq1  AACTAAGACACTTCACTTGCTTAATATTTGTATAAATATTTACGGAGATA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGACACTTCACTTGCTTAATATTTGTATAAATATTTACGGAGATA  445

seq1  GCTAATTTCACATTCAATTCAGCATAGGTAATTTTAATACTATTTAGTCA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTCACATTCAATTCAGCATAGGTAATTTTAATACTATTTAGTCA  495

seq1  ATACCCCTCTCAGTCTATGGTTTTGTTCCTTATTATTTAATTTTCAAGAT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCTCTCAGTCTATGGTTTTGTTCCTTATTATTTAATTTTCAAGAT  545

seq1  CCATGATATATATACATACCCAAGTACAACCACTTTGTACATGAACATGA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATATATATACATACCCAAGTACAACCACTTTGTACATGAACATGA  595

seq1  CCTACTTCTGAGCCACTGAAAAATTTCATGCCAATCCATTCCATCTATGG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCTGAGCCACTGAAAAATTTCATGCCAATCCATTCCATCTATGG  645

seq1  ATTTTTGCTTCTACAAGAATGATCAGAAAGTAAAGTGCTTATCATAGATA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCTTCTACAAGAATGATCAGAAAGTAAAGTGCTTATCATAGATA  695

seq1  ATCTCTCATCTACCTACACTGTAGGACTCAGATCTGACATTAAATCCTCT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCATCTACCTACACTGTAGGACTCAGATCTGACATTAAATCCTCT  745

seq1  GAAAGTCTTTCTTTCCCCTAAAATAGATCAAATATATACTATATAACTGC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTTTCTTTCCCCTAAAATAGATCAAATATATACTATATAACTGC  795

seq1  CCTCATTTTCATACTTTTTACCTGTACTGATTTTAATAAACCTTCATGTC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTTCATACTTTTTACCTGTACTGATTTTAATAAACCTTCATGTC  845

seq1  TGTCTTTGTATTAAATTTCTGTACACTCCTCATGGTTTTCATGTCCTTTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGTATTAAATTTCTGTACACTCCTCATGGTTTTCATGTCCTTTT  895

seq1  GTATTTATATTCATCATGCACAATATATTTTGGATCACAAGATATACTTA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATATTCATCATGCACAATATATTTTGGATCACAAGATATACTTA  945

seq1  TGTATGTTGAGATGTGAGTTGCAGAATGAACGAGTTGCAAGATCATATCC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTGAGATGTGAGTTGCAGAATGAACGAGTTGCAAGATCATATCC  995

seq1  TAAACAGTAGTGGAAAAGAAATTACATGGTGCCTATTTCTTCTGATTTGG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTAGTGGAAAAGAAATTACATGGTGCCTATTTCTTCTGATTTGG  1045

seq1  GGAATGTAGTGATAGAAACTTTCAGTGATACACGTAACAACTTTCTTTTA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTAGTGATAGAAACTTTCAGTGATACACGTAACAACTTTCTTTTA  1095

seq1  TGTAAACATGAAAAATAACTAAAACTGAATTC  1116
      ||||||||||||||||||||||||||||||||
seq2  TGTAAACATGAAAAATAACTAAAACTGAATTC  1127


seq1: chr3_113755566_113756702
seq2: B6Ng01-285F18.g_65_1207

seq1  GAATTCAGGCAGCTCAAGCAGTGGAATGTAGATGGAGGGGGAAAGTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCAGCTCAAGCAGTGGAATGTAGATGGAGGGGGAAAGTCATG  50

seq1  AAAGCTCTTAAAGGGCTTCTGCAGTAAGAACTAATCTCCTGTGTCCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTTAAAGGGCTTCTGCAGTAAGAACTAATCTCCTGTGTCCTGTT  100

seq1  TTCCTGTTTGATAAGCCCAAAGTATATAGTAGAAGACAGGAAAAACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTGATAAGCCCAAAGTATATAGTAGAAGACAGGAAAAACTACT  150

seq1  GAGTACAATTCTATACTGAGTTCGATATGCCTGAAAATGTTTCACAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAATTCTATACTGAGTTCGATATGCCTGAAAATGTTTCACAGTGG  200

seq1  TCATGGAAATAGAACTCAAATACCAAAGCATACCCGAGTAGATTTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAATAGAACTCAAATACCAAAGCATACCCGAGTAGATTTGAAAA  250

seq1  TTAGAAATTTAATTTTTCCTGATTTACTTTAATCAGACACATTAAATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATTTAATTTTTCCTGATTTACTTTAATCAGACACATTAAATCAT  300

seq1  TGCTTTTAATTTTTAAACAATTTGAACTAAGAAAGCCAGAAGATTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAATTTTTAAACAATTTGAACTAAGAAAGCCAGAAGATTTTTCT  350

seq1  TTTGCAATATTTGTACATATATGTGGAAAGTAACAGAAACCATATTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATATTTGTACATATATGTGGAAAGTAACAGAAACCATATTATGA  400

seq1  GCGCTTAATACGGTGGTTATGGGGATGGCAGCATGAAGCAACAGGCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTAATACGGTGGTTATGGGGATGGCAGCATGAAGCAACAGGCAGAA  450

seq1  TTTCAAAATGATTAATCATTTGGTTCTGTAGAAAGAAGACAGAGAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATGATTAATCATTTGGTTCTGTAGAAAGAAGACAGAGAAAACA  500

seq1  GAATTTGTTAGCTGAGTTTTACTTTTTTCTAAAACTGAAATTCCTTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTTAGCTGAGTTTTACTTTTTTCTAAAACTGAAATTCCTTTGTA  550

seq1  GAAAATTAATTTAAATTGAAACTTGAAACAACAACAACAACAAAAACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAATTTAAATTGAAACTTGAAACAACAACAACAACAAAAACCAA  600

seq1  CAGCTGTGAATTAGGGACTGAGTGCTGATATCACACACTGTCCCATCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGAATTAGGGACTGAGTGCTGATATCACACACTGTCCCATCAAA  650

seq1  GAAATTTGTCAGACTTTAAGGGTAGAGTCTCTACGTTGAATCTAGCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGTCAGACTTTAAGGGTAGAGTCTCTACGTTGAATCTAGCAAAA  700

seq1  GAAGGATGCTCTGATCATATTCATTTCAGATTTGAAAGGGATAACTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGCTCTGATCATATTCATTTCAGATTTGAAAGGGATAACTGTTT  750

seq1  GTGTCCTTGTAGAGGCCTTGCATGAGAAGTCACTGGTATGAAAGGGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTGTAGAGGCCTTGCATGAGAAGTCACTGGTATGAAAGGGAAGC  800

seq1  TCTGCTCCACCCTGTGCATTGGTGATGGATGCTAGTTTTGAACATAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCACCCTGTGCATTGGTGATGGATGCTAGTTTTGAACATAGCCT  850

seq1  GTTTTTTATCTTTTTATCATTGAATTGCAGCCTCTTAGGCCCCGATCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTATCTTTTTATCATTGAATTGCAGCCTCTTAGGCCCCGATCATG  900

seq1  TCTACGCTGGAGTCTTGTTCAGCTTAGAGCAAGAAGTTGAAATAAAATAA  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTACGCTGGAGTCTTG-TCAGCTTAGAGCAAGAAGTTGAAATAAAATAA  949

seq1  GTAGATAATATGTTGTGGTTTCTGTCACA-TTTTTCCTCAGAGTAATTTA  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTAGATAATATGTTGTGGTTTCTGTCACATTTTTTCCTCAGAGTAATTTA  999

seq1  TATCCTGAAATGTGAATT-GAGCTTAATTT-AAAATAAATATCAGCATC-  1046
      ||||||| ||||||| || ||||||||||| ||||  |||||||||||| 
seq2  TATCCTG-AATGTGATTTGGAGCTTAATTTCAAAAATAATATCAGCATCA  1048

seq1  AGGAATCAA-TTAACTGG-CTTAAGATAATTTCAG-ACTATTTTCAGT-A  1092
      ||||||||| | |||||| |||| ||| ||||||| |||||||||||| |
seq2  AGGAATCAACTAAACTGGCCTTAGGATTATTTCAGAACTATTTTCAGTAA  1098

seq1  CGTTTTAAGTTTCCTTTTGTGGTTTTCATCTGT-GGGTTATTGCAG  1137
      || |||||| || |||||| || |||||||||| |||| |||||||
seq2  CGGTTTAAGGTTTCTTTTG-GGGTTTCATCTGTGGGGTAATTGCAG  1143


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