BAC Information

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BAC

Clone NameB6Ng01-285F21
Chromosome3 (Build37)
Map Location 99,849,081 - 99,960,524
singlet/doubletdoublet
Overlap geneSpag17, Wdr3
Upstream geneLOC668557, Wars2, Tbx15, M6pr-ps, LOC623045
Downstream geneGdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285F21.bB6Ng01-285F21.g
ACCGA083834GA083835
length1,020561
definitionB6Ng01-285F21.b B6Ng01-285F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,959,871 - 99,960,524)(99,849,081 - 99,849,641)
sequence
gaattctttgcttattatgataaacagtaaggtagaatagcttccaacat
taccgttattctaaaacaacaaacgagttactctcatacctgttagttag
caattcttcctagtaaaaaatctctttctggtttttcttgtagtgggaaa
gacactatggtaaagtggtgggacctggataaccagcactgcttcaaaac
aatggttggccaccgaactgaggtatgtattgcatcatgggctccagaga
agaatgaaaaagcaaaggatggtttctacttcagccttcttgggctcttt
ttactgcttactgatctgtgctctgtcttgagagacactgaggttggctg
ggaggaagtagtggcagccattgaaacagttgttgcttttttggtctaat
acacactagccttggatggctttataacctctgctcaggttcatcttttt
agttagactcacctatgactgttatattactcaagagttctttagaggaa
aggactgtatagagtgaatgttgacatccatgtagacagggggattatta
caataatttacaggctgtagtccagctagtctaaaagtggctgtctgcca
atggaaagtccaagaatccattagttattcagtccacaagcctgaatgtc
tcagctgatcgtccatgagtaacagaatcctgaagaagtgggctctaatg
ccagtgaagaaatggatttgctagtgagagggagagtaagcgggcacaga
aagagctagcttccttctttcgtgtcctttatgtaggctgccagcagaag
gtatggccagattaaacattgcatcttttcaccccaaaagatctgtatta
aaggtgtcatcatcccacttcaagattcatggtagaagttggtctttcca
cttcaaatgatttaattaagagaaaatacttcacacatgtgtgcccatca
tttaagttttagttaatttccagatgtcaagttgactaccaggaatagcc
atcacaacttctagggatgt
gaattccacttcttcatttgaaatattcattgaaaggcactaaggataag
aactagaaaatatcaacagaggaatggatacagaaaatgtggtacatcta
cacaatggagtactactcagctattaaaaagaatgaatttatgaaattcc
taggcaaatggatggacctggagggcatcatcctgagtgaggtaacacat
tcacaaagaaactcacacaatatgtactcactgataagtggatattagcc
ccaaacctaggatacccaagatataagatataatttgctaaacacatgaa
actcaagaagaatgaagactgaagtgtggacactatgcccctccttagat
ttgggaacaaaacacccatggaaggagttacagagacaaagtttggagct
gagatgaaaggatggaccatgtagagactgccatatccagggatccaccc
cataatcagcatccaaacgctgacaccattgcatacattagcaagatttt
attgaaaggacccagatgtagctgtctcttgtgagactatgccggggcct
agcaaacacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99959871_99960524
seq2: B6Ng01-285F21.b_47_700 (reverse)

seq1  CTGAGACATTCAGGCTTGTGGACTGAATAACTAATGGATTCTTGGACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACATTCAGGCTTGTGGACTGAATAACTAATGGATTCTTGGACTTT  50

seq1  CCATTGGCAGACAGCCACTTTTAGACTAGCTGGACTACAGCCTGTAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGCAGACAGCCACTTTTAGACTAGCTGGACTACAGCCTGTAAATT  100

seq1  ATTGTAATAATCCCCCTGTCTACATGGATGTCAACATTCACTCTATACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATAATCCCCCTGTCTACATGGATGTCAACATTCACTCTATACAG  150

seq1  TCCTTTCCTCTAAAGAACTCTTGAGTAATATAACAGTCATAGGTGAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTCTAAAGAACTCTTGAGTAATATAACAGTCATAGGTGAGTCT  200

seq1  AACTAAAAAGATGAACCTGAGCAGAGGTTATAAAGCCATCCAAGGCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAAGATGAACCTGAGCAGAGGTTATAAAGCCATCCAAGGCTAGT  250

seq1  GTGTATTAGACCAAAAAAGCAACAACTGTTTCAATGGCTGCCACTACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTAGACCAAAAAAGCAACAACTGTTTCAATGGCTGCCACTACTTC  300

seq1  CTCCCAGCCAACCTCAGTGTCTCTCAAGACAGAGCACAGATCAGTAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCCAACCTCAGTGTCTCTCAAGACAGAGCACAGATCAGTAAGCA  350

seq1  GTAAAAAGAGCCCAAGAAGGCTGAAGTAGAAACCATCCTTTGCTTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGAGCCCAAGAAGGCTGAAGTAGAAACCATCCTTTGCTTTTTCA  400

seq1  TTCTTCTCTGGAGCCCATGATGCAATACATACCTCAGTTCGGTGGCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTGGAGCCCATGATGCAATACATACCTCAGTTCGGTGGCCAAC  450

seq1  CATTGTTTTGAAGCAGTGCTGGTTATCCAGGTCCCACCACTTTACCATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTTGAAGCAGTGCTGGTTATCCAGGTCCCACCACTTTACCATAG  500

seq1  TGTCTTTCCCACTACAAGAAAAACCAGAAAGAGATTTTTTACTAGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCCCACTACAAGAAAAACCAGAAAGAGATTTTTTACTAGGAAGA  550

seq1  ATTGCTAACTAACAGGTATGAGAGTAACTCGTTTGTTGTTTTAGAATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAACTAACAGGTATGAGAGTAACTCGTTTGTTGTTTTAGAATAAC  600

seq1  GGTAATGTTGGAAGCTATTCTACCTTACTGTTTATCATAATAAGCAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGTTGGAAGCTATTCTACCTTACTGTTTATCATAATAAGCAAAGA  650

seq1  ATTC  654
      ||||
seq2  ATTC  654

seq1: chr3_99849081_99849641
seq2: B6Ng01-285F21.g_66_626

seq1  GAATTCCACTTCTTCATTTGAAATATTCATTGAAAGGCACTAAGGATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCTTCATTTGAAATATTCATTGAAAGGCACTAAGGATAAG  50

seq1  AACTAGAAAATATCAACAGAGGAATGGATACAGAAAATGTGGTACATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAAATATCAACAGAGGAATGGATACAGAAAATGTGGTACATCTA  100

seq1  CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC  150

seq1  TAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAT  200

seq1  TCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCC  250

seq1  CCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAA  300

seq1  ACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAT  350

seq1  TTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCT  400

seq1  GAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCC  450

seq1  CATAATCAGCATCCAAACGCTGACACCATTGCATACATTAGCAAGATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCAGCATCCAAACGCTGACACCATTGCATACATTAGCAAGATTTT  500

seq1  ATTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCT  550

seq1  AGCAAACACAG  561
      |||||||||||
seq2  AGCAAACACAG  561