BAC Information

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BAC

Clone NameB6Ng01-285P08
Chromosome3 (Build37)
Map Location 18,574,679 - 18,728,866
singlet/doubletdoublet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285P08.bB6Ng01-285P08.g
ACCGA084275GA084276
length1,1501,148
definitionB6Ng01-285P08.b B6Ng01-285P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,727,706 - 18,728,866)(18,574,679 - 18,575,833)
sequence
gaattccaagctcatcggcttcaagcattttctaagacattggaacactg
gtggaggcttacctatgtcagaattcaatcttaaaaggcacttataataa
aataatactaaaagagagcacatggatccatacaccagactaactcgggg
atagggtatgagtatacaggttatgagaatgccaaggttccaggaagttg
agtttccttgaaactctttgcctcatgagtgcttccaggcctgccaagca
gacttcactggagtgtgtgtagcagggcatggtggtgcacacctttaatg
ccagcactcaagaagcagtggcaggcggatttctgagttcgaggccagcc
tggtctacaaagtgagttccaggacagccagggctatacagagaaacctc
atcttgaaaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaca
aaaccaacaaaaaaaccaacagcaacaacaagaagtacaagatcattgtt
cccaaatagcttctcatgaacagttcattttggttgagtcttccctggtc
ctttatttcctaccctaacactctactatagattgaaccttttgcccact
tgactttcattgttaccccttccactttcagtattcccctctctactttg
acttcctctacacctactatccttcctccttaaaggtataccctgccacc
aatgccctgtgtcgagttttctagctttcacatgtactccatattaaacg
cactaaatatttgaaagtgaaactattacataagagaaaacaaatagcat
ttctccttttaggcctggatggaccccactcagaagtataagattgtcta
gttacatcaatttacctacagattttactattctttattgctgagtagta
tcttattgtgtatatgtaccatattttaattatctctccatcagtttaat
ggatgccttcttagatgttgtaaatagagtgtcagtaaatagctactaag
ttctttggggtcatgctacaagtgatttgagctttttatttcagtgatac
atcagtatgaatcatcatcatagtgatttctcttgttatcgtcatgccta
tggtcatagatcctgaagccttggatcaggctggaaatcaggccttcatg


gaattcagaatgaataattggtaatgaataaggatttccatcctggagga
tacacaacagcatagctatggggctgggtgctgagaccacacaggaggtt
tccttaaggcttcctggaaagccccaaaactaagctctttagagaaaatg
gaagacagcattcaaggagactctgatggacgttttagagagtgggacat
agttcaagtagaaatgtcaaagtgagaaaacatgttttctatgttgaaca
tttttaccttccaaaaatataagtaggcaacagaagaggtgaaacattag
aacacaagagaatatcccccgtctcagttattggtgggtgaggaacacag
agatcatgggagcccatctctaatcctctggccttccagtcttccacacc
agaatatacaagaacagtcctagggtgtttggtgttaaacgtgataaaaa
gtttgtgtcttctgttaagatacaattcagcatgtttataacaaagttac
taaattcttcaaaatacaaaatatggactagcatcctagcatctgtgaaa
gtcaattcttaatacatctccttaaacattttatgacaggagcacattgt
attcatttcaaaaattaaatgaatagaacaaggggcgacaggttggatag
ttattgtgaggatcaagcaaagagcccatgagcccaatagtgctgagcct
cttggagctggaagagactgaacacatcatactcagaagatacacaggga
gtgacctttttgaaaaacattttgacctaagtgtggtaaatttgattgta
gacttctgacctctagaactataagagaaaaaaattttcatggtttcaaa
ccattgagtttatggtgatataacaatcgcagcaataggaaaccaataca
aagcagattaataacttcataaaagttccaaacaagaaaattgttccata
gtgtactatagagaaacactatactccaattcaacatttcttaaaggatg
ctctatgattcaaatttgttcttcaagagcaaagagctcatattcatgga
aacaaatttgaaagatataatcctcaattagtatagaaagatagtctgga
aaggacagctattacctggaatgttgcactttactttaattcagcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18727706_18728866
seq2: B6Ng01-285P08.b_46_1195 (reverse)

seq1  CATGAAAGGGCCTGATTT-CAG-CTGATCCAAAGCTTCAGGATCTTATGA  48
      ||||||  |||||||||| ||| ||||||||| ||||||||||| |||||
seq2  CATGAA--GGCCTGATTTCCAGCCTGATCCAAGGCTTCAGGATC-TATGA  47

seq1  -CATAGGGCAATGACCGGATAACAGGAAGAAATCACTATGATGATGATCC  97
       ||||||   |||||  ||||||| | ||||||||||||||||||||| |
seq2  CCATAGG--CATGAC--GATAACAAG-AGAAATCACTATGATGATGATTC  92

seq1  AATACTGATGGTATCACTGAAATAAAAAGCCTCAAATCACTTGTAGGCAT  147
       |||||||| ||||||||||||||||||| ||||||||||||||| ||||
seq2  -ATACTGAT-GTATCACTGAAATAAAAAG-CTCAAATCACTTGTA-GCAT  138

seq1  GAACCCAAAGAACTTAGTAGCCTATTTTACTGACACTCTATTTACAACAT  197
      || ||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  GACCCCAAAGAACTTAGTAG-CTA-TTTACTGACACTCTATTTACAACAT  186

seq1  CTAAGAAGGCATCCATTAAACTGATGGAGAGATAATTAAAATATGGTACA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGGCATCCATTAAACTGATGGAGAGATAATTAAAATATGGTACA  236

seq1  TATACACAATAAGATACTACTCAGCAATAAAGAATAGTAAAATCTGTAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAATAAGATACTACTCAGCAATAAAGAATAGTAAAATCTGTAGG  286

seq1  TAAATTGATGTAACTAGACAATCTTATACTTCTGAGTGGGGTCCATCCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGATGTAACTAGACAATCTTATACTTCTGAGTGGGGTCCATCCAG  336

seq1  GCCTAAAAGGAGAAATGCTATTTGTTTTCTCTTATGTAATAGTTTCACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAAGGAGAAATGCTATTTGTTTTCTCTTATGTAATAGTTTCACTT  386

seq1  TCAAATATTTAGTGCGTTTAATATGGAGTACATGTGAAAGCTAGAAAACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTTAGTGCGTTTAATATGGAGTACATGTGAAAGCTAGAAAACT  436

seq1  CGACACAGGGCATTGGTGGCAGGGTATACCTTTAAGGAGGAAGGATAGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACAGGGCATTGGTGGCAGGGTATACCTTTAAGGAGGAAGGATAGTA  486

seq1  GGTGTAGAGGAAGTCAAAGTAGAGAGGGGAATACTGAAAGTGGAAGGGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGAGGAAGTCAAAGTAGAGAGGGGAATACTGAAAGTGGAAGGGGT  536

seq1  AACAATGAAAGTCAAGTGGGCAAAAGGTTCAATCTATAGTAGAGTGTTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGAAAGTCAAGTGGGCAAAAGGTTCAATCTATAGTAGAGTGTTAG  586

seq1  GGTAGGAAATAAAGGACCAGGGAAGACTCAACCAAAATGAACTGTTCATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAAATAAAGGACCAGGGAAGACTCAACCAAAATGAACTGTTCATG  636

seq1  AGAAGCTATTTGGGAACAATGATCTTGTACTTCTTGTTGTTGCTGTTGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTATTTGGGAACAATGATCTTGTACTTCTTGTTGTTGCTGTTGGT  686

seq1  TTTTTTGTTGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  736

seq1  GTTTTTTTCAAGATGAGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTCAAGATGAGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACT  786

seq1  CACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCACTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCACTGC  836

seq1  TTCTTGAGTGCTGGCATTAAAGGTGTGCACCACCATGCCCTGCTACACAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGTGCTGGCATTAAAGGTGTGCACCACCATGCCCTGCTACACAC  886

seq1  ACTCCAGTGAAGTCTGCTTGGCAGGCCTGGAAGCACTCATGAGGCAAAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTGAAGTCTGCTTGGCAGGCCTGGAAGCACTCATGAGGCAAAGA  936

seq1  GTTTCAAGGAAACTCAACTTCCTGGAACCTTGGCATTCTCATAACCTGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGGAAACTCAACTTCCTGGAACCTTGGCATTCTCATAACCTGTA  986

seq1  TACTCATACCCTATCCCCGAGTTAGTCTGGTGTATGGATCCATGTGCTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATACCCTATCCCCGAGTTAGTCTGGTGTATGGATCCATGTGCTCT  1036

seq1  CTTTTAGTATTATTTTATTATAAGTGCCTTTTAAGATTGAATTCTGACAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTATTATTTTATTATAAGTGCCTTTTAAGATTGAATTCTGACAT  1086

seq1  AGGTAAGCCTCCACCAGTGTTCCAATGTCTTAGAAAATGCTTGAAGCCGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCCTCCACCAGTGTTCCAATGTCTTAGAAAATGCTTGAAGCCGA  1136

seq1  TGAGCTTGGAATTC  1161
      ||||||||||||||
seq2  TGAGCTTGGAATTC  1150


seq1: chr3_18574679_18575833
seq2: B6Ng01-285P08.g_70_1217

seq1  GAATTCAGAATGAATAATTGGTAATGAATAAGGATTTCCATCCTGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATGAATAATTGGTAATGAATAAGGATTTCCATCCTGGAGGA  50

seq1  TACACAACAGCATAGCTATGGGGCTGGGTGCTGAGACCACACAGGAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAACAGCATAGCTATGGGGCTGGGTGCTGAGACCACACAGGAGGTT  100

seq1  TCCTTAAGGCTTCCTGGAAAGCCCCAAAACTAAGCTCTTTAGAGAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAGGCTTCCTGGAAAGCCCCAAAACTAAGCTCTTTAGAGAAAATG  150

seq1  GAAGACAGCATTCAAGGAGACTCTGATGGACGTTTTAGAGAGTGGGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGCATTCAAGGAGACTCTGATGGACGTTTTAGAGAGTGGGACAT  200

seq1  AGTTCAAGTAGAAATGTCAAAGTGAGAAAACATGTTTTCTATGTTGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGTAGAAATGTCAAAGTGAGAAAACATGTTTTCTATGTTGAACA  250

seq1  TTTTTACCTTCCAAAAATATAAGTAGGCAACAGAAGAGGTGAAACATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCTTCCAAAAATATAAGTAGGCAACAGAAGAGGTGAAACATTAG  300

seq1  AACACAAGAGAATATCCCCCGTCTCAGTTATTGGTGGGTGAGGAACACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGAGAATATCCCCCGTCTCAGTTATTGGTGGGTGAGGAACACAG  350

seq1  AGATCATGGGAGCCCATCTCTAATCCTCTGGCCTTCCAGTCTTCCACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATGGGAGCCCATCTCTAATCCTCTGGCCTTCCAGTCTTCCACACC  400

seq1  AGAATATACAAGAACAGTCCTAGGGTGTTTGGTGTTAAACGTGATAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATACAAGAACAGTCCTAGGGTGTTTGGTGTTAAACGTGATAAAAA  450

seq1  GTTTGTGTCTTCTGTTAAGATACAATTCAGCATGTTTATAACAAAGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTCTTCTGTTAAGATACAATTCAGCATGTTTATAACAAAGTTAC  500

seq1  TAAATTCTTCAAAATACAAAATATGGACTAGCATCCTAGCATCTGTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTTCAAAATACAAAATATGGACTAGCATCCTAGCATCTGTGAAA  550

seq1  GTCAATTCTTAATACATCTCCTTAAACATTTTATGACAGGAGCACATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCTTAATACATCTCCTTAAACATTTTATGACAGGAGCACATTGT  600

seq1  ATTCATTTCAAAAATTAAATGAATAGAACAAGGGGCGACAGGTTGGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTCAAAAATTAAATGAATAGAACAAGGGGCGACAGGTTGGATAG  650

seq1  TTATTGTGAGGATCAAGCAAAGAGCCCATGAGCCCAATAGTGCTGAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTGAGGATCAAGCAAAGAGCCCATGAGCCCAATAGTGCTGAGCCT  700

seq1  CTTGGAGCTGGAAGAGACTGAACACATCATACTCAGAAGATACACAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCTGGAAGAGACTGAACACATCATACTCAGAAGATACACAGGGA  750

seq1  GTGACCTTTTTGAAAAACATTTTGACCTAAGTGTGGTAAATTTGATTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTTTTTGAAAAACATTTTGACCTAAGTGTGGTAAATTTGATTGTA  800

seq1  GACTTCTGACCTCTAGAACTATAAGAGAAAAAAA-TTTCATGGTTTCAAA  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACTTCTGACCTCTAGAACTATAAGAGAAAAAAATTTTCATGGTTTCAAA  850

seq1  CCATTGAGTTTATGGTGATATAACAATCGCAGCAATAGGAAACAAATACA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCATTGAGTTTATGGTGATATAACAATCGCAGCAATAGGAAACCAATACA  900

seq1  AAGCAGATTAATAACTTCATAAAAGTTCCAAACAAGAAAA-TGTTCCATA  948
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGCAGATTAATAACTTCATAAAAGTTCCAAACAAGAAAATTGTTCCATA  950

seq1  GTGTACTATAGAGAAACCACTATACTCCAA-TCAACATT--CTAAAGAAT  995
      |||||||||||||||| ||||||||||||| ||||||||   ||||| ||
seq2  GTGTACTATAGAGAAA-CACTATACTCCAATTCAACATTTCTTAAAGGAT  999

seq1  GCTCTATGATTCAAATTTGTTCTTCAAAGAGCAAAGAGCTCATA-TCATG  1044
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  GCTCTATGATTCAAATTTGTTCTTC-AAGAGCAAAGAGCTCATATTCATG  1048

seq1  GAAAACCAAATTTTAAAAGAATAATAAATCTCAAAATTAGTATAG-AAGA  1093
      ||||  ||||||| |||   |||||    |||  ||||||||||| ||||
seq2  GAAA--CAAATTTGAAAGATATAAT---CCTC--AATTAGTATAGAAAGA  1091

seq1  TAGTTCTGGGAAAGGACAGCTATATACCTGGAATGGTGGCACATACTTTT  1143
      ||| ||| ||||||||||||||| |||||||||| || |||| |   |||
seq2  TAG-TCT-GGAAAGGACAGCTAT-TACCTGGAAT-GTTGCACTTTACTTT  1137

seq1  AATTCCAGCACT  1155
      |||| |||||||
seq2  AATT-CAGCACT  1148


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