BAC Information

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BAC

Clone NameB6Ng01-286C06
Chromosome3 (Build37)
Map Location 126,992,672 - 126,993,637
singlet/doubletsinglet
Overlap genenone
Upstream geneArsj, Camk2d, Ank2, LOC100043749
Downstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286C06.bB6Ng01-286C06.g
ACCGA084412GA084413
length9661,188
definitionB6Ng01-286C06.b B6Ng01-286C06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgcagagttgtgagacacagtttctcagagagacatctgaggg
acatcttcctcatcttcagtctgggcatcatcactgaaggatgctttttt
tatttttttctccaagaagcatataaaaaatggtattaccatagaatcaa
atataagctggtgccagaagtgggagttgatattaatactaggcttggct
ttgatctacttatccattcctaaccagagagttgggtaattgtctagatc
tccagaaaccacatggcatagtattggctacagcactaaagttccctaaa
agccacatcagtgttggggattctgaagatgaaatcttcctgatttcatg
actgatgagaacttctggattatgaagagttggcatggtgcagatcaaaa
gccaagattatctcgatttatttttagtatggcttgtgtgtgtgtgtagt
ttttttttaatgtgtgtatgtgttcatatgtgtgtctgtatgtatataca
tgtatgcttatctgcatagatgcctattggattagttacttttctgttgc
tgtgataaaatatcccaacaaaaagtaagttaaggaagaaagaatttatt
ttggctcacagttccagaggggtacaggggaagacatagcaatgggaggg
tgagacttgcctggcagtcagaacgcagaacacagcaattccatcagaca
taggaagcagagagaaagaccagtggttggggacaggctaaaaaccccaa
agcacacccactggtgacatacttcttccaccaaggcttcacctcctaga
gattccagaaccttctgaaacagcatggccggctggggaccaagtgttca
agctcatgagctatgttgaaatttcacactgaaaccatatgggccatggg
aaccagccagcaagcagagagagaaagagagagagagagagagagaggga
gggagggagaagaagg
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcctcagcaaa
cacagaaagtggatgctcacagtcagctaatggatggatcatagggctcc
caatggaggagctagagaaagtagccaaggagctaaagggatctgcaacc
ctataggtggacacattatgagctaaccagtaccccggagctctgactct
agctgcatattatgtcaaagatgctagtcgccatcactgggtaaaaggaa
gagtccattgacttgccaactttttaatgccagttacaggaattccaggt
ctaaaaggggaatgggtgggccagagggaggaagaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126992672_126993637
seq2: B6Ng01-286C06.b_47_1012 (reverse)

seq1  CCTTC-TCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTC  49
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTC  50

seq1  TGCCTTGCTGGCTGGTTCCCATGG-CCATATGGTTTCAGTGTGAAATTTC  98
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TG-CTTGCTGGCTGGTTCCCATGGCCCATATGGTTTCAGTGTGAAATTTC  99

seq1  AACATAGCCTCATGAGCTTGAACACTTGGTCCCCAGCCGGCCATGCTGTT  148
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAG-CTCATGAGCTTGAACACTTGGTCCCCAGCCGGCCATGCTGTT  148

seq1  TCAGAAGGTTCTGGAATCTCTAGGAGGTGAAGCCTTGGTGGAAGAAGTAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGTTCTGGAATCTCTAGGAGGTGAAGCCTTGGTGGAAGAAGTAT  198

seq1  GTCACCAGTGGGTGTGCTTTGGGGTTTTTAGCCTGTCCCCAACCACTGGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAGTGGGTGTGCTTTGGGGTTTTTAGCCTGTCCCCAACCACTGGT  248

seq1  CTTTCTCTCTGCTTCCTATGTCTGATGGAATTGCTGTGTTCTGCGTTCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCTGCTTCCTATGTCTGATGGAATTGCTGTGTTCTGCGTTCTG  298

seq1  ACTGCCAGGCAAGTCTCACCCTCCCATTGCTATGTCTTCCCCTGTACCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGGCAAGTCTCACCCTCCCATTGCTATGTCTTCCCCTGTACCCC  348

seq1  TCTGGAACTGTGAGCCAAAATAAATTCTTTCTTCCTTAACTTACTTTTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACTGTGAGCCAAAATAAATTCTTTCTTCCTTAACTTACTTTTTG  398

seq1  TTGGGATATTTTATCACAGCAACAGAAAAGTAACTAATCCAATAGGCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATATTTTATCACAGCAACAGAAAAGTAACTAATCCAATAGGCATC  448

seq1  TATGCAGATAAGCATACATGTATATACATACAGACACACATATGAACACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGATAAGCATACATGTATATACATACAGACACACATATGAACACA  498

seq1  TACACACATTAAAAAAAAACTACACACACACACAAGCCATACTAAAAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACATTAAAAAAAAACTACACACACACACAAGCCATACTAAAAATA  548

seq1  AATCGAGATAATCTTGGCTTTTGATCTGCACCATGCCAACTCTTCATAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGAGATAATCTTGGCTTTTGATCTGCACCATGCCAACTCTTCATAAT  598

seq1  CCAGAAGTTCTCATCAGTCATGAAATCAGGAAGATTTCATCTTCAGAATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTTCTCATCAGTCATGAAATCAGGAAGATTTCATCTTCAGAATC  648

seq1  CCCAACACTGATGTGGCTTTTAGGGAACTTTAGTGCTGTAGCCAATACTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACTGATGTGGCTTTTAGGGAACTTTAGTGCTGTAGCCAATACTA  698

seq1  TGCCATGTGGTTTCTGGAGATCTAGACAATTACCCAACTCTCTGGTTAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTGGTTTCTGGAGATCTAGACAATTACCCAACTCTCTGGTTAGG  748

seq1  AATGGATAAGTAGATCAAAGCCAAGCCTAGTATTAATATCAACTCCCACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATAAGTAGATCAAAGCCAAGCCTAGTATTAATATCAACTCCCACT  798

seq1  TCTGGCACCAGCTTATATTTGATTCTATGGTAATACCATTTTTTATATGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCACCAGCTTATATTTGATTCTATGGTAATACCATTTTTTATATGC  848

seq1  TTCTTGGAGAAAAAAATAAAAAAAGCATCCTTCAGTGATGATGCCCAGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGAGAAAAAAATAAAAAAAGCATCCTTCAGTGATGATGCCCAGAC  898

seq1  TGAAGATGAGGAAGATGTCCCTCAGATGTCTCTCTGAGAAACTGTGTCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGAGGAAGATGTCCCTCAGATGTCTCTCTGAGAAACTGTGTCTC  948

seq1  ACAACTCTGCAGGAATTC  966
      ||||||||||||||||||
seq2  ACAACTCTGCAGGAATTC  966