BAC Information

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BAC

Clone NameB6Ng01-286K09
Chromosome3 (Build37)
Map Location 25,631,491 - 25,632,550
singlet/doubletsinglet
Overlap geneNlgn1, LOC621017
Upstream geneEG635702, LOC100039592
Downstream geneLOC229152, Spata16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286K09.bB6Ng01-286K09.g
ACCGA084789GA084790
length1721,056
definitionB6Ng01-286K09.b B6Ng01-286K09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgttcagctctgaggcccattttttaatggggttatttgattttctgg
agtccaccttcttgatttctttatatatattggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggtctttctgt
cttattgacagtgtcttttgcc

gaattcaactgggcaagttatcaaatacaactgagatacaaatccaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaccaaagaccacagactgagagctcca
aaacttattgacttgaatttgtgagaataggccacacaacacagttcagt
gtatctgaaagactgttgtctgtgagaagctatggtacctggcctcttat
cagccacatccattctctatttcctcacatcaccttacagctgaatcttt
ggtttgacatctaaactttgccctttttaggacggcaccaatgatacgat
attggattggggatccactcgaatcatacaaaatcacaggttaggccaat
tagttcccactaatgtggcctcatttccaaaaaagttgcatttgaagtaa
cagaaagtatggcttattagcatgtgaatctcaggaaataatgttctgct
tgccttagagcatcacagtttcttttttaaattcatggccttgcctaatg
cctgattttagggtctttattaattttttagcgtaattatttgagtactt
tttatgtcgttaaataaaggtagaaaagacagtttttaatcttttcattc
tgcctttctaatgcatattatttatagacaaaaacaaaaggctctttgtt
aaacttctgcctggtacaagaataagtccctgacatcagaagtttgctct
tgaacccctacatcacttcagagtgtctaaggctaaagatttatcaaggc
acagtaattgctttaacagcacggagtatgagcttagctaggagagttct
aagccttggtggtgctaatagggagagacatcagtaaggaaaatgttaag
gattaaacagtcactgacctctatttccttaaatattcctctggggattg
caagtttctagacgtatgctgtaactagaagatagctttagattcattta
gaccagtgtttctcatgtttaatatgtctttataagctgtttcaggtttg
cgtttttagctgtgtagctgatggagaaatgacttgaaaggctcagattc
aatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25631491_25632550
seq2: B6Ng01-286K09.g_72_1127

seq1  GAATTCAACTGGG-AAGTTATCAAATACAACTGAGATACAAATCCAAAAA  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGGGCAAGTTATCAAATACAACTGAGATACAAATCCAAAAA  50

seq1  AAAAAAAAAAAAAAAAAAAAAAAACCAAAGACCACAGACTGAGAGCTCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAACCAAAGACCACAGACTGAGAGCTCCA  100

seq1  AAACTTATTGACTTGAATTTGTGAGAATAGGCCACACAACACAGTTCAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATTGACTTGAATTTGTGAGAATAGGCCACACAACACAGTTCAGT  150

seq1  GTATCTGAAAGACTGTTGTCTGTGAGAAGCTATGGTACCTGGCCTCTTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGAAAGACTGTTGTCTGTGAGAAGCTATGGTACCTGGCCTCTTAT  200

seq1  CAGCCACATCCATTCTCTATTTCCTCACATCACCTTACAGCTGAATCTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACATCCATTCTCTATTTCCTCACATCACCTTACAGCTGAATCTTT  250

seq1  GGTTTGACATCTAAACTTTGCCCTTTTTAGGACGGCACCAATGATACGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGACATCTAAACTTTGCCCTTTTTAGGACGGCACCAATGATACGAT  300

seq1  ATTGGATTGGGGATCCACTCGAATCATACAAAATCACAGGTTAGGCCAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATTGGGGATCCACTCGAATCATACAAAATCACAGGTTAGGCCAAT  350

seq1  TAGTTCCCACTAATGTGGCCTCATTTCCAAAAAAGTTGCATTTGAAGTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCCACTAATGTGGCCTCATTTCCAAAAAAGTTGCATTTGAAGTAA  400

seq1  CAGAAAGTATGGCTTATTAGCATGTGAATCTCAGGAAATAATGTTCTGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTATGGCTTATTAGCATGTGAATCTCAGGAAATAATGTTCTGCT  450

seq1  TGCCTTAGAGCATCACAGTTTCTTTTTTAAATTCATGGCCTTGCCTAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGAGCATCACAGTTTCTTTTTTAAATTCATGGCCTTGCCTAATG  500

seq1  CCTGATTTTAGGGTCTTTATTAATTTTTTAGCGTAATTATTTGAGTACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTTAGGGTCTTTATTAATTTTTTAGCGTAATTATTTGAGTACTT  550

seq1  TTTATGTCGTTAAATAAAGGTAGAAAAGACAGTTTTTAATCTTTTCATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCGTTAAATAAAGGTAGAAAAGACAGTTTTTAATCTTTTCATTC  600

seq1  TGCCTTTCTAATGCATATTATTTATAGACAAAAACAAAAGGCTCTTTGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCTAATGCATATTATTTATAGACAAAAACAAAAGGCTCTTTGTT  650

seq1  AAACTTCTGCCTGGTACAAGAATAAGTCCCTGACATCAGAAGTTTGCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTGCCTGGTACAAGAATAAGTCCCTGACATCAGAAGTTTGCTCT  700

seq1  TGAACCCCTACATCACTTCAGAGTGTCTAAGGCTAAAGATTTATCAAGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCCTACATCACTTCAGAGTGTCTAAGGCTAAAGATTTATCAAGGC  750

seq1  ACAGTAATTGCTTTAACAGCACGGAGTATGAGCTTAGCTAGGAGAGTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATTGCTTTAACAGCACGGAGTATGAGCTTAGCTAGGAGAGTTCT  800

seq1  AAGCCTTGGTGGTGCTAATAGGGAGAGACATCAGTAAGGAAAATGTTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGGTGGTGCTAATAGGGAGAGACATCAGTAAGGAAAATGTTAAG  850

seq1  GATTAAACAGTCACTGACCTCTATTTCCTTAAATATTCCTCTGGGGATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAACAGTCACTGACCTCTATTTCCTTAAATATTCCTCTGGGGATTG  900

seq1  CAAGTTTCTAGAACGTATGCTGTAACTAGAAGATAGCTTTAGATTCATTT  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCTAG-ACGTATGCTGTAACTAGAAGATAGCTTTAGATTCATTT  949

seq1  AGACCAGTGTTTCTCATGTTTAATATTGTCTTTAT-AGCTGTTTTCAGTT  998
      ||||||||||||||||||||||||| ||||||||| ||||||||   |||
seq2  AGACCAGTGTTTCTCATGTTTAATA-TGTCTTTATAAGCTGTTTCAGGTT  998

seq1  TGCGTTTTTAGCTGTGGTAGCTTGAATGAGAAATGACCTTGAGAGGCTCA  1048
      ||||||||||||||| ||||| |||  ||||||||| ||||| |||||||
seq2  TGCGTTTTTAGCTGT-GTAGC-TGATGGAGAAATGA-CTTGAAAGGCTCA  1045

seq1  GATTCAAATACT  1060
      ||||| ||||||
seq2  GATTC-AATACT  1056


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