BAC Information

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BAC

Clone NameB6Ng01-286K23
Chromosome3 (Build37)
Map Location 53,224,810 - 53,330,149
singlet/doubletdoublet
Overlap geneLOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2
Upstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808
Downstream genePpia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286K23.bB6Ng01-286K23.g
ACCGA084815GA084816
length8371,122
definitionB6Ng01-286K23.b B6Ng01-286K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,329,312 - 53,330,149)(53,224,810 - 53,225,926)
sequence
gaattcttcacttaactgggtgaattatgtggtatgagacctgtatcttg
ataaaactgctcaaaagtaaaaaggacttactttgctgaaaatagtgtta
ttttaaggaactctggcgcacgtccctgttgcatgtgcgcactgggagaa
gtgaagggatgcttgccgtgctgagaaaggctgttgtttattctgtgcac
taatggcacaaaatctggcgtcggcataagtgggctgatttggttaacgc
tgctgcaaatggttcaattgttttaggtcctcaacctcgtgcagtcctac
gtgacccttcgagttcctctgtacgtttcctacgtgttccactcccccgt
gggcgtgggcggctggcagcatttcgacttgaagtcagagctccgactca
cattcgtgtacgacactgccatcttgtggaaccatgggatcggcagcccc
ccggaagctgagctgcaaggtgggtggctgtggctcccaaagcatctttc
ctacctgtggtaattactcagaatgataattttgtttttatttcaggtaa
aaattaggggggggcacctttcgatatcgttatttttatattctctaata
acgtgacgttttaaaacctttgtcaagcccggcgtggtggcgcacgcctt
taatcccaacactcgggaggcagaggcaggatgattctgagttcaaggcc
agcctggtctacaacgtgagttccaggacagccagggctacacagagaaa
ccctgtctcgaaaaaccgaagtggggggggggggacccctttgtcaagga
aagatcattcaatgcttcaactttgcatgatgtttga
gaattccacaggagagagcaagaggacatgtgtgaaactaataaaattat
aataggatgtgagtgagattatggggctgttgaggtggctcctgcagtaa
agggactgacttgctgctaagcccgatgacctgaattcaggtcatcactg
ggtcagattccctgggtctctgttggtggaagacatgaatttgcttccac
aaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaccttgttggtg
tgtccatgtgaacatgcacgcgtgtgtacctatggagactcaaggtcaac
ttaggttatctttcttcaattgctttccacctttttatttcaagacagga
tctctcattggctatgctggctatccaatgagcttcagggattggcctgt
ctctgtttcccacgccttcctcatgctgggcatcacagcacagtctgtgc
ccgtttttttgtgggttctagggatgcaagcttatatcctcatgcttgtg
agacttaacagctgagccatctctcttgtcactagttgatatttgtggtc
actgacatgattttttttttccatctcatggtataaactcactttctagg
ccctaaaagcttgtactcatggaatcggtgcacctttttagctattagaa
ccacagagaaagattgatgtcctcggaagatcaaaggaaacacagcttgc
ccaactgcagttgcttccggtaatcaaacacgggttcccccgtcttccat
ttcttttcctggtgctcgttcctaaacccagtccaaagttacctttcccc
agtccaggtctctgatctctaaagtagaaacagcatatttcaatctggga
gagacctaagagagtagtctttctttcccttctgtggctctgggggaggg
cttgcgcatcacactctaagtcaagggcaaagggactctgcgttctgtcc
atcacaacagaccccgctttttactggacgggtgcagaggggaatgcttc
gccagctgtcccatcgtaatgctgttgtcagcctcaactcaagaatcggc
tagtccaaatgccgcttttcttctggtggttggcttccctgaggtaatct
tggatttcctgtaacaccaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53329312_53330149
seq2: B6Ng01-286K23.b_46_882 (reverse)

seq1  TCAAACATCATGCAAAGTTTGAAGCATTGATATGATCTTTCCTTGACAAA  50
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TCAAACATCATGCAAAG-TTGAAGCATTGA-ATGATCTTTCCTTGACAAA  48

seq1  GGG--TCCCCCCCCCCCACTTCGGTTTTTCGAGACAGGGTTTCTCTGTGT  98
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCCCCCCCCCCCACTTCGGTTTTTCGAGACAGGGTTTCTCTGTGT  98

seq1  AGCCCTGGCTGTCCTGGAACTCACGTTGTAGACCAGGCTGGCCTTGAACT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACGTTGTAGACCAGGCTGGCCTTGAACT  148

seq1  CAGAAATCATCCTGCCTCTGCCTCCCGAGTGTTGGGATTAAAGGCGTGCG  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAG-AATCATCCTGCCTCTGCCTCCCGAGTGTTGGGATTAAAGGCGTGCG  197

seq1  CCACCACGCCGGGCTTGACAAAGGTTTTAAAACGTCACGTTATTAGAGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACGCCGGGCTTGACAAAGGTTTTAAAACGTCACGTTATTAGAGAA  247

seq1  TATAAAAATAACGATATCGAAAGGTGCCCCCCCCTAATTTTTACCTGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATAACGATATCGAAAGGTGCCCCCCCCTAATTTTTACCTGAAA  297

seq1  TAAAAACAAAATTATCATTCTGAGTAATTACCACAGGTAGGAAAGATGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAAATTATCATTCTGAGTAATTACCACAGGTAGGAAAGATGCT  347

seq1  TTGGGAGCCACAGCCACCCACCTTGCAGCTCAGCTTCCGGGGGGCTGCCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCCACAGCCACCCACCTTGCAGCTCAGCTTCCGGGGGGCTGCCG  397

seq1  ATCCCATGGTTCCACAAGATGGCAGTGTCGTACACGAATGTGAGTCGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGGTTCCACAAGATGGCAGTGTCGTACACGAATGTGAGTCGGAG  447

seq1  CTCTGACTTCAAGTCGAAATGCTGCCAGCCGCCCACGCCCACGGGGGAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTTCAAGTCGAAATGCTGCCAGCCGCCCACGCCCACGGGGGAGT  497

seq1  GGAACACGTAGGAAACGTACAGAGGAACTCGAAGGGTCACGTAGGACTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACGTAGGAAACGTACAGAGGAACTCGAAGGGTCACGTAGGACTGC  547

seq1  ACGAGGTTGAGGACCTAAAACAATTGAACCATTTGCAGCAGCGTTAACCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGTTGAGGACCTAAAACAATTGAACCATTTGCAGCAGCGTTAACCA  597

seq1  AATCAGCCCACTTATGCCGACGCCAGATTTTGTGCCATTAGTGCACAGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCCCACTTATGCCGACGCCAGATTTTGTGCCATTAGTGCACAGAA  647

seq1  TAAACAACAGCCTTTCTCAGCACGGCAAGCATCCCTTCACTTCTCCCAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACAGCCTTTCTCAGCACGGCAAGCATCCCTTCACTTCTCCCAGT  697

seq1  GCGCACATGCAACAGGGACGTGCGCCAGAGTTCCTTAAAATAACACTATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACATGCAACAGGGACGTGCGCCAGAGTTCCTTAAAATAACACTATT  747

seq1  TTCAGCAAAGTAAGTCCTTTTTACTTTTGAGCAGTTTTATCAAGATACAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAAAGTAAGTCCTTTTTACTTTTGAGCAGTTTTATCAAGATACAG  797

seq1  GTCTCATACCACATAATTCACCCAGTTAAGTGAAGAATTC  838
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATACCACATAATTCACCCAGTTAAGTGAAGAATTC  837

seq1: chr3_53224810_53225926
seq2: B6Ng01-286K23.g_66_1187

seq1  GAATTCCACAGGAGAGAGCAAGAGGACATGTGTGAAACTAATAAAATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGAGAGAGCAAGAGGACATGTGTGAAACTAATAAAATTAT  50

seq1  AATAGGATGTGAGTGAGATTATGGGGCTGTTGAGGTGGCTCCTGCAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATGTGAGTGAGATTATGGGGCTGTTGAGGTGGCTCCTGCAGTAA  100

seq1  AGGGACTGACTTGCTGCTAAGCCCGATGACCTGAATTCAGGTCATCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGACTTGCTGCTAAGCCCGATGACCTGAATTCAGGTCATCACTG  150

seq1  GGTCAGATTCCCTGGGTCTCTGTTGGTGGAAGACATGAATTTGCTTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGATTCCCTGGGTCTCTGTTGGTGGAAGACATGAATTTGCTTCCAC  200

seq1  AAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACCTTGTTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACCTTGTTGGTG  250

seq1  TGTCCATGTGAACATGCACGCGTGTGTACCTATGGAGACTCAAGGTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGTGAACATGCACGCGTGTGTACCTATGGAGACTCAAGGTCAAC  300

seq1  TTAGGTTATCTTTCTTCAATTGCTTTCCACCTTTTTATTTCAAGACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTATCTTTCTTCAATTGCTTTCCACCTTTTTATTTCAAGACAGGA  350

seq1  TCTCTCATTGGCTATGCTGGCTATCCAATGAGCTTCAGGGATTGGCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATTGGCTATGCTGGCTATCCAATGAGCTTCAGGGATTGGCCTGT  400

seq1  CTCTGTTTCCCACGCCTTCCTCATGCTGGGCATCACAGCACAGTCTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTCCCACGCCTTCCTCATGCTGGGCATCACAGCACAGTCTGTGC  450

seq1  CCGTTTTTTTGTGGGTTCTAGGGATGCAAGCTTATATCCTCATGCTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTTTTTGTGGGTTCTAGGGATGCAAGCTTATATCCTCATGCTTGTG  500

seq1  AGACTTAACAGCTGAGCCATCTCTCTTGTCACTAGTTGATATTTGTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAACAGCTGAGCCATCTCTCTTGTCACTAGTTGATATTTGTGGTC  550

seq1  ACTGACATGATTTTTTTTTTCCATCTCATGGTATAAACTCACTTTCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATGATTTTTTTTTTCCATCTCATGGTATAAACTCACTTTCTAGG  600

seq1  CCCTAAAAGCTTGTACTCATGGAATCGGTGCACCTTTTTAGCTATTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAGCTTGTACTCATGGAATCGGTGCACCTTTTTAGCTATTAGAA  650

seq1  CCACAGAGAAAGATTGATGTCCTCGGAAGATCAAAGGAAACACAGCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGAAAGATTGATGTCCTCGGAAGATCAAAGGAAACACAGCTTGC  700

seq1  CCAACTGCAG-TGCTTCCGGTAATCAAACACGGGTTCCCCCGTCTTCCAT  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGCAGTTGCTTCCGGTAATCAAACACGGGTTCCCCCGTCTTCCAT  750

seq1  TTCTTTTCCTGGTGCTCGTTCCTAAACCCAGTCCAAAGTTACC-TTCCCC  798
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCTTTTCCTGGTGCTCGTTCCTAAACCCAGTCCAAAGTTACCTTTCCCC  800

seq1  AGTCCAGGTCTCTGATCTCTAAAGTAGAAACAGCATATTTCAATCTGGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGTCTCTGATCTCTAAAGTAGAAACAGCATATTTCAATCTGGGA  850

seq1  GAGACCTAAGAGAGTAGTC-TTCTTTCCC-TCTGTGGCTCT-GGGGAGGG  895
      ||||||||||||||||||| ||||||||| ||||||||||| ||||||||
seq2  GAGACCTAAGAGAGTAGTCTTTCTTTCCCTTCTGTGGCTCTGGGGGAGGG  900

seq1  CTTGCGCATCACAACTCTAAAGTCAA-GGCAAA-GGACTCTGCGTTCTTG  943
      |||||||||||| ||||| ||||||| |||||| ||||||||||||| ||
seq2  CTTGCGCATCAC-ACTCT-AAGTCAAGGGCAAAGGGACTCTGCGTTC-TG  947

seq1  TCCATCACAACAGACCCCGCCTTTTACCGGAAGGGGTGCAGAGGGGAAAG  993
      |||||||||||||||||||| |||||| || | ||||||||||||||| |
seq2  TCCATCACAACAGACCCCGCTTTTTACTGG-ACGGGTGCAGAGGGGAATG  996

seq1  CTTCGCCCAGC-GTCGCAGCG-AATGCCGTTG-CAGCCTC-ACTCAAGAT  1039
      ||||| ||||| ||| || || ||||| |||| ||||||| |||||||| 
seq2  CTTCG-CCAGCTGTCCCATCGTAATGCTGTTGTCAGCCTCAACTCAAGAA  1045

seq1  CCGGCTAAGTCCAAATGCCGCCTTTTCTTCTTGT-GTTGCTTTCTCTGAG  1088
       ||||| ||||||||||||| |||||||||| || ||||  ||| |||||
seq2  TCGGCT-AGTCCAAATGCCG-CTTTTCTTCTGGTGGTTGGCTTCCCTGAG  1093

seq1  GTTAAATCTT-GATTTCCTGTAACA-CAACA  1117
      ||  |||||| |||||||||||||| |||||
seq2  GT--AATCTTGGATTTCCTGTAACACCAACA  1122