BAC Information

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BAC

Clone NameB6Ng01-286O05
Chromosome3 (Build37)
Map Location 36,034,750 - 36,122,521
singlet/doubletdoublet
Overlap geneD3Ertd254e, Gpr103
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9
Downstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286O05.bB6Ng01-286O05.g
ACCGA084964GA084965
length1,115691
definitionB6Ng01-286O05.b B6Ng01-286O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,121,482 - 36,122,521)(36,034,750 - 36,035,436)
sequence
gaattcattgtcattgggcctttggaaagtccagcgaccccactgagatc
accacaggtccattagcaccgctagggttttaactagatgggctgtgtgg
gtaagacagcttcatttgcaatcaagagggtcagggttaaccaaagaatc
tacataagaagcaagccatgcctctgtccaacacccctcccctacactgt
gcttaaagacaaaccactccttgggatctcaagggctggatggactgcca
gcctgggaaacacagcagcctaggggccagtgagagagtctatctcaacc
cagtaagttgaaaagtgataggaaaatacgttacttttgctttggcctct
ttatacatgcacactcatgtgcaagcaccacacacgcgtgcaaacacaca
caaataataacaataaacactaacaaaatcaaatgctggcaaagctgaga
ggaaaattcaggctcatgcattgtcactagaaatataaaatgaaaccttg
gaaaataactcggggatctccttacaaattaaatatacaatcatctgtag
caacttcttaagtaatctaacaaaatatccagcaattggccagtggttac
ataaacaggtagggctcagcagagtgtgacttcaaatgggaagaaaatgg
tcgctagggctaacacacacacacacacacacacacacacacacacacac
acacaccacacgcacgcacgcacacgtacacgcacgcacacagacacaca
cacacacacacatgcacgtgcgcgcacatacacacacactgagacagaaa
gacagagagagacagagacagagagagacagagacagagagacagagaga
cagagagacagagagacagagagacagagagacagagagacagagagaga
gtcaagtccctggatctgtgttgctgcatatttaagaatacaatggagct
aagcggagtgaagggtacaagggaccactgagctataattgcaagttcct
ctgtgtggttttattttaaattccgttgggtagccgtggctcacattatt
ttctcaagaaggaagacttcgatgagaaatgggaaaaactcaatcaacag
ttcaacctaaacaag
gaattcattaatactgcatgttgcttaccatgctttgtggatacttttac
ttttcttctgttttctgtggcgctccacccaagacagcatttttcatcag
gtcccccatttccaggcccctcattctgcaacctcctgtagccatccggc
agccaaggacaaactgggtttacctgaaagggggactgggaatgaaaaag
aggcagggagggggtggtggtgagagaagaatgaagccaagataaggttc
tgatcaaggctccaagtttaatattcagcactgtgtttatataggcaaag
ctcacagacccatcctttgtttcagctggagtatgtggcaaagcaaggtc
agcctggcagtctagtcttctaagttcctgtgggaatttgtagatgcaac
catgcagatgactccaccaaggttgataaggtccattgtggtaatcactc
aaaaatgggtaaaatggaggaagaaatagaaatgatgaaattaatggggt
tttgtctctttttgactccacaaaagggaagcaggtagtcagctgcagtg
aagtagttggaaaagggggaacctagtgataatgtaatagaacaaggagg
ccattgttgcagcttctacaatcagcagaacccagcagctatggacatat
ggttctgggctttagagtcaagaggcaaggagactactggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_36121482_36122521
seq2: B6Ng01-286O05.b_115_1161 (reverse)

seq1  CTTG-TTAGGTTGAAACTG-TGATTGAGTTTT--CCATTTCTCATCG-AG  45
      |||| |||||||| ||||| ||||||||||||  ||||||||||||| ||
seq2  CTTGTTTAGGTTG-AACTGTTGATTGAGTTTTTCCCATTTCTCATCGAAG  49

seq1  TCT--CCTCTTGAG-AAATAATGTGAGCCACGGCTACCCAACGGAATTTA  92
      |||  | ||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCTTGAGAAAATAATGTGAGCCACGGCTACCCAACGGAATTTA  99

seq1  AAATAAAACCACACAAGAGGAACTTGCAATTATAGCTCAGTGGTCCCTTG  142
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAATAAAACCACAC-AGAGGAACTTGCAATTATAGCTCAGTGGTCCCTTG  148

seq1  TACCCCTCACTCCGCTTAGCTCCATTGTA-TCTTAAATATGCAGCAACAC  191
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  TACCCTTCACTCCGCTTAGCTCCATTGTATTCTTAAATATGCAGCAACAC  198

seq1  AGATCCAGGGACTTGACTCTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGGGACTTGACTCTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCT  248

seq1  GTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTGTCTCTCTCTGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTGTCTCTCTCTGT  298

seq1  CTCTGTCTCTCTCTGTCTTTCTGTCTCAGTGTGTGTGTATGTGCGCGCAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTCTCTGTCTTTCTGTCTCAGTGTGTGTGTATGTGCGCGCAC  348

seq1  GTGCATGTGTGTGTGTGTGTGTGTCTGTGTGCGTGCGTGTACGTGTGCGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTGTGTGTGTGTGTGTGTCTGTGTGCGTGCGTGTACGTGTGCGT  398

seq1  GCGTGCGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  448

seq1  TGTGTTAGCCCTAGCGACCATTTTCTTCCCATTTGAAGTCACACTCTGCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAGCCCTAGCGACCATTTTCTTCCCATTTGAAGTCACACTCTGCT  498

seq1  GAGCCCTACCTGTTTATGTAACCACTGGCCAATTGCTGGATATTTTGTTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTACCTGTTTATGTAACCACTGGCCAATTGCTGGATATTTTGTTA  548

seq1  GATTACTTAAGAAGTTGCTACAGATGATTGTATATTTAATTTGTAAGGAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTTAAGAAGTTGCTACAGATGATTGTATATTTAATTTGTAAGGAG  598

seq1  ATCCCCGAGTTATTTTCCAAGGTTTCATTTTATATTTCTAGTGACAATGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCGAGTTATTTTCCAAGGTTTCATTTTATATTTCTAGTGACAATGC  648

seq1  ATGAGCCTGAATTTTCCTCTCAGCTTTGCCAGCATTTGATTTTGTTAGTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCTGAATTTTCCTCTCAGCTTTGCCAGCATTTGATTTTGTTAGTG  698

seq1  TTTATTGTTATTATTTGTGTGTGTTTGCACGCGTGTGTGGTGCTTGCACA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTTATTATTTGTGTGTGTTTGCACGCGTGTGTGGTGCTTGCACA  748

seq1  TGAGTGTGCATGTATAAAGAGGCCAAAGCAAAAGTAACGTATTTTCCTAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGCATGTATAAAGAGGCCAAAGCAAAAGTAACGTATTTTCCTAT  798

seq1  CACTTTTCAACTTACTGGGTTGAGATAGACTCTCTCACTGGCCCCTAGGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCAACTTACTGGGTTGAGATAGACTCTCTCACTGGCCCCTAGGC  848

seq1  TGCTGTGTTTCCCAGGCTGGCAGTCCATCCAGCCCTTGAGATCCCAAGGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTTTCCCAGGCTGGCAGTCCATCCAGCCCTTGAGATCCCAAGGA  898

seq1  GTGGTTTGTCTTTAAGCACAGTGTAGGGGAGGGGTGTTGGACAGAGGCAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGTCTTTAAGCACAGTGTAGGGGAGGGGTGTTGGACAGAGGCAT  948

seq1  GGCTTGCTTCTTATGTAGATTCTTTGGTTAACCCTGACCCTCTTGATTGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTTCTTATGTAGATTCTTTGGTTAACCCTGACCCTCTTGATTGC  998

seq1  AAATGAAGCTGTCTTACCCACACAGCCCATCTAGTTAAAACCCTAGCGG  1040
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGCTGTCTTACCCACACAGCCCATCTAGTTAAAACCCTAGCGG  1047

seq1: chr3_36034750_36035436
seq2: B6Ng01-286O05.g_69_759

seq1  GAATTCATTAATACTGCATGTTGCTTACCATGCTTTGTGGATACTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATACTGCATGTTGCTTACCATGCTTTGTGGATACTTTTAC  50

seq1  TTTTCTTCTGTTTTCTGTGGCGCTCCACCCAAGACAGCATTTTTCATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTGTTTTCTGTGGCGCTCCACCCAAGACAGCATTTTTCATCAG  100

seq1  GTCCCCCATTTCCAGGCCCCTCATTCTGCAACCTCCTGTAGCCATCCGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCATTTCCAGGCCCCTCATTCTGCAACCTCCTGTAGCCATCCGGC  150

seq1  AGCCAAGGACAAACTGGGTTTACCTGAAAGGGGGACTGGGAATGAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGACAAACTGGGTTTACCTGAAAGGGGGACTGGGAATGAAAAAG  200

seq1  AGGCAGGGAGGGGGTGGTGGTGAGAGAAGAATGAAGCCAAGATAAGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGAGGGGGTGGTGGTGAGAGAAGAATGAAGCCAAGATAAGGTTC  250

seq1  TGATCAAGGCTCCAAGTTTAATATTCAGCACTGTGTTTATATAGGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGGCTCCAAGTTTAATATTCAGCACTGTGTTTATATAGGCAAAG  300

seq1  CTCACAGACCCATCCTTTGTTTCAGCTGGAGTATGTGGCAAAGCAAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGACCCATCCTTTGTTTCAGCTGGAGTATGTGGCAAAGCAAGGTC  350

seq1  AGCCTGGCAGTCTAGTCTTCTAAGTTCCTGTGGGAATTTGTAGATGCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCAGTCTAGTCTTCTAAGTTCCTGTGGGAATTTGTAGATGCAAC  400

seq1  CATGCAGATGACTCCACCAAGGTTGATAAGGTCCATTGTGGTAATCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGATGACTCCACCAAGGTTGATAAGGTCCATTGTGGTAATCACTC  450

seq1  AAAAATGGGTAAAATGGAGGAAGAAATAGAAATGATGAAATTAATGGGG-  499
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAAATGGGTAAAATGGAGGAAGAAATAGAAATGATGAAATTAATGGGGT  500

seq1  TTTGTCTC-TTTTGACTCCACAAAAGGGAAGCAGGTAGTCAGCTGCAGTG  548
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCTTTTTGACTCCACAAAAGGGAAGCAGGTAGTCAGCTGCAGTG  550

seq1  AAGTAGTTGGAAAA-GGGGAACCTAGTGATAATGTAATAGAACAAGGAGG  597
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGTAGTTGGAAAAGGGGGAACCTAGTGATAATGTAATAGAACAAGGAGG  600

seq1  CCA-TGTTGCAGCTTCTACAAGCAGCAGAACCCAGCAGCTATGGACATAT  646
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCATTGTTGCAGCTTCTACAATCAGCAGAACCCAGCAGCTATGGACATAT  650

seq1  GGTTCT-GGCTTTAGAGTCAAGAGGCAAAGGAGACTACTGGG  687
      |||||| ||||||||||||||||||| |||||||||||||||
seq2  GGTTCTGGGCTTTAGAGTCAAGAGGC-AAGGAGACTACTGGG  691