BAC Information

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BAC

Clone NameB6Ng01-287H18
Chromosome3 (Build37)
Map Location 57,358,132 - 57,359,190
singlet/doubletsinglet
Overlap geneWwtr1
Upstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4
Downstream geneCommd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287H18.bB6Ng01-287H18.g
ACCGA085396GA085397
length1,1411,054
definitionB6Ng01-287H18.b B6Ng01-287H18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaagtatagcgaaaggctaaggagcacctgaaaaaatg
ttcaacatccttaaacatcagagaaagtgcaaatcaaaacagccttgaga
ttccatcagtcagaatggctatgatcaaaaattcaggtgacagcagatgc
tggtgaggatgtggagaaagaggaacaattctcctttgctggtggtacta
caagcttgtacaaccactctggaaatcagtttggtggttcctcagaaaat
tggacataatactaatggaagatccagcaataccactcctgggcatatat
ccagaagatgctccaacttgtaataaggacacatgctccactatgttcat
agcagccttatttataatatccagaaggtggaaacaacccagatgtccct
caacagaggaattgacaaagaaaatgtggttcatttacacaatggagtat
tacacagctattaaaaacaataaatttatgaaattcttagacaaatggat
ggatctggaggatatcatcctaagtgaggtaacccaatcacaaaagaaca
cacataatatgcactcactgataagtggatattagcccagaagctcagaa
tcctttttagaagggggaacaaaatacccataaaaggagttacaaagaca
aagttcagagcagagactgaaggatcaaccatccagagacttccccactt
ggggatccaccccataaacaaccaccaaactcaaacactatggcagatgc
taacaggtgcctgctatacctgtctcctgagagaatctgccagtgcctgg
caaatacagaagtggatgctcacattcatccattggatggagcagtgtcc
ctaatgaaaggagctagataaagtatccaaggagctgaaggggtctgcag
ccccataggagaaaaacactttaaatttaaagaacaatttaaactaacca
gtacccccagacctccttgggaataaaccaccaatcaaagaaaaacacat
gatgggacacatggctctagctacatatgtagcagagatggctagtttgg
tcatcatgggaggaagtcctagtctgttgagtctattgcccaagttatag
ggatgccaaggcaggaattgggagtggggtgggttttggga
gaattcaccgtaacagcctaaggagaagcactgtggctagagagggcact
ctcagaccacaagtgtcaaatgtgatgtcaagccaactggagacatccat
gttgcatagcccttgaggccacgtgagcttgtcatctatgagatttacaa
aggtttcacgcccaggtcaggttctccttgctttttcatatcccctgagc
catgtttgtggtaaaggcctacggttaagacagtttggagaagcttttta
tgagctgcaccctccgcagcaaagaaaaccaaatgagcaaattctaagac
actgccactggagtcaacgttggccactggtacgcttcagtacctcaggc
gacaagcccattcttgccagtgtcttccccagctggcagaatgtgtataa
ccctcacaagagcagagacaatgtgaattttcagaggctggggggaaaaa
tggttatttagaaggagtgtatctatttcaaacagtaccaagaaaaattc
caatgagatgacacagtcttgcagttatctctgccaaatagttcaaagaa
cagctcaaggaaaagaaaaggtgtttcccaactcctacaccattatcaag
tctgaaggcagcaaaggcctcggcctcccagtttctcttttctttttgtt
ttgttctgttttgagataagagtctttcttcactaggcagcccaaacctg
cctcaaactatgaattctcctgcctcagacttctgagggctaggatcaca
ggtatgtaccaccgtacttagccttatttaatgaatgttagtgtttattt
ttcaaaataaaaaaaaaaaaaaagggttcatatctttcccaaactaaata
agtgcctttgatctaaggggggcggggctcctccgggtcacaaacacaag
cccatgcacccatgtctcctggcttactttcctggaggctactaaagcct
tgcagaaaagatgctgaagaatcactgttgtctggctgctagaactgcca
cataacctccaaagaaattttcagcttcacaaggcaaggtactcacttag
cctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_57358132_57359190
seq2: B6Ng01-287H18.g_70_1123

seq1  GAATTCACCGTAACAGCCTAAGGAGAAGCACTGTGGCTAGAGAGGGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGTAACAGCCTAAGGAGAAGCACTGTGGCTAGAGAGGGCACT  50

seq1  CTCAGACCACAAGTGTCAAATGTGATGTCAAGCCAACTGGAGACATCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACCACAAGTGTCAAATGTGATGTCAAGCCAACTGGAGACATCCAT  100

seq1  GTTGCATAGCCCTTGAGGCCACGTGAGCTTGTCATCTATGAGATTTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATAGCCCTTGAGGCCACGTGAGCTTGTCATCTATGAGATTTACAA  150

seq1  AGGTTTCACGCCCAGGTCAGGTTCTCCTTGCTTTTTCATATCCCCTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCACGCCCAGGTCAGGTTCTCCTTGCTTTTTCATATCCCCTGAGC  200

seq1  CATGTTTGTGGTAAAGGCCTACGGTTAAGACAGTTTGGAGAAGCTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGTGGTAAAGGCCTACGGTTAAGACAGTTTGGAGAAGCTTTTTA  250

seq1  TGAGCTGCACCCTCCGCAGCAAAGAAAACCAAATGAGCAAATTCTAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCACCCTCCGCAGCAAAGAAAACCAAATGAGCAAATTCTAAGAC  300

seq1  ACTGCCACTGGAGTCAACGTTGGCCACTGGTACGCTTCAGTACCTCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCACTGGAGTCAACGTTGGCCACTGGTACGCTTCAGTACCTCAGGC  350

seq1  GACAAGCCCATTCTTGCCAGTGTCTTCCCCAGCTGGCAGAATGTGTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCCCATTCTTGCCAGTGTCTTCCCCAGCTGGCAGAATGTGTATAA  400

seq1  CCCTCACAAGAGCAGAGACAATGTGAATTTTCAGAGGCTGGGGGGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACAAGAGCAGAGACAATGTGAATTTTCAGAGGCTGGGGGGAAAAA  450

seq1  TGGTTATTTAGAAGGAGTGTATCTATTTCAAACAGTACCAAGAAAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATTTAGAAGGAGTGTATCTATTTCAAACAGTACCAAGAAAAATTC  500

seq1  CAATGAGATGACACAGTCTTGCAGTTATCTCTGCCAAATAGTTCAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGATGACACAGTCTTGCAGTTATCTCTGCCAAATAGTTCAAAGAA  550

seq1  CAGCTCAAGGAAAAGAAAAGGTGTTTCCCAACTCCTACACCATTATCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAAGGAAAAGAAAAGGTGTTTCCCAACTCCTACACCATTATCAAG  600

seq1  TCTGAAGGCAGCAAAGGCCTCGGCCTCCCAGTTTCTCTTTTCTTTTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGCAGCAAAGGCCTCGGCCTCCCAGTTTCTCTTTTCTTTTTGTT  650

seq1  TTGTTCTGTTTTGAGATAAGAGTCTTTC-TCACTAGGCAGCCCAAACCTG  699
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGTTCTGTTTTGAGATAAGAGTCTTTCTTCACTAGGCAGCCCAAACCTG  700

seq1  CCTCAAACTATGAATTCTCCTGCCTCAGACTTCTGAGGGCTAGGATCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTATGAATTCTCCTGCCTCAGACTTCTGAGGGCTAGGATCACA  750

seq1  GGTATGTACCACCGTACTTAGCCTTATTTAATGAATGTTAGTGTTTATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTACCACCGTACTTAGCCTTATTTAATGAATGTTAGTGTTTATTT  800

seq1  TTCAAAAAAAAAAAAAAAAAAAAAAAAAGGTTTCATATCTTTCCCAAACT  849
      |||     |||| ||||||||||||||||| |||||||||||||||||||
seq2  TTC-----AAAATAAAAAAAAAAAAAAAGGGTTCATATCTTTCCCAAACT  845

seq1  AAAATAAGTGCCTTTGATCTTAGGGGGGGCGGGGCTCCTCCGGGTCACAA  899
       |||||||||||||||||| || |||||||||||||||||||||||||||
seq2  -AAATAAGTGCCTTTGATC-TAAGGGGGGCGGGGCTCCTCCGGGTCACAA  893

seq1  ACACAAGCCCATGCACCCATGTCTCCT-GCCTAC--TCCCTGAGGCTACT  946
      ||||||||||||||||||||||||||| || |||  |||  |||||||||
seq2  ACACAAGCCCATGCACCCATGTCTCCTGGCTTACTTTCCTGGAGGCTACT  943

seq1  AAAGCCTTGCAAGAAAAGATGCTGAAG-ATCACTGTTTGCTGGGCTGC-A  994
      |||||||||| |||||||||||||||| |||||||||  || |||||| |
seq2  AAAGCCTTGC-AGAAAAGATGCTGAAGAATCACTGTTGTCT-GGCTGCTA  991

seq1  GAACCTGCCCACCTTAACCCCCAAAGAAATTTCCAGCTTCAC-AGGCAAA  1043
      ||| |||||   | ||||| |||||||||||| ||||||||| |||||| 
seq2  GAA-CTGCC--ACATAACCTCCAAAGAAATTTTCAGCTTCACAAGGCAAG  1038

seq1  GTACTCACCTAGCCTG  1059
      |||||||| |||||||
seq2  GTACTCACTTAGCCTG  1054