BAC Information

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BAC

Clone NameB6Ng01-287M02
Chromosome3 (Build37)
Map Location 44,166,074 - 44,254,359
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287M02.bB6Ng01-287M02.g
ACCGA085593GA085594
length1,0951,149
definitionB6Ng01-287M02.b B6Ng01-287M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,253,239 - 44,254,359)(44,166,074 - 44,167,240)
sequence
gaattcctccattatctatttaaatgggtggttgttagagtttatgttgc
tttccttgtgtttctaatgtgacattttcgatgttctattttgccataac
tctagaattagagacccatttgtctcattccaatctagtttcttacccat
aattctaatggaagtgttcttttaatggccatcaataacttacttaggag
ctgactcatgcttcccaaggtctcagcagtatgtcaaagtcactgatact
tccttacttcaaaacactttcaattataggtttcttaaatatatacactg
aagcaggctttacctttcgacctcactttttcttgccatttatcctcgct
cattttgacaatttttgacttcttttctattattttctgttgtctaccta
agcacaaatttaaatgacttaagcaagaaacaattattttaaaaagctgt
tcaaactacgatttgccaaacatgacaagctattgtacgcaggaacttac
agcagacatgactgaatgctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
cttttaaagatcacaatcactaaaccaagagcatggatgtggaaggaact
cataaaatcatactcctaactgagaagttattagcaatgaatgtagacca
agggaaggaaggagagtcagttttctttagagatgatgcccctaaaagtc
taaacaaaaaccgtgtcctacagccaagaaaaaataatataaaaccctta
tttttttggtagagattagattcaaatctttttagattcaaatctactct
gtatttttgtctcacaaattccttccctatccccatccttaacccaccac
attagctttcaaacttcaagctacctagtttacttaaggatgctgaaaaa
tgcttctattaattaattattattaatttattattattatattatcatta
ttatattattattaatactctccaccatgtatagtaggtaaagaagtaga
gtttttcattgtgttccatcattatcattcaaatatcacttactgtgatt
gtttcagttgtactgacctgtccatcactattccattacatcatt

gaattcaagttctatttttcatttatattggcatttacaagtaacaagta
acaagtaaacagctccaattaagtttgacctgtgtttgaaaatcagatgc
tgttgaagtgactcatcagacataactggttagctgtccttgtgcattct
ttacatatggccactgttccattaacttaacaaaatcttgttaaaaacat
atatttagaattttataaaaaacactggaattgtttctattttaaaaaaa
tatcacatgaattcactaaactagaatcactgaaaagtgggcataattac
aaaacaaatagatttatggaaaacattgaagcaattttaaagtgttgtga
aaatggcaaagagtctaaaggaaaaagtaaaataagaaaaaaaaaaaaac
ccaaacttatacaaacaaaaatagaaaaggccaaaaagaaaatgaaatct
aatattaaaaataaaaagtttgcaacaaaactgctattttatttatagag
tttagtattcagtaataagattggcttcatgaatttctatactcaactct
caatttaaaaacaaataattcattttaatacaaatagtattaattaaaac
cactaaagttaatataattaaatataagaaagatatgagaatgttagaag
atgaaaagactgttttaatgaactaggcctaagaggaccaatacacacac
acacaaacacacacatgcattgcatacataaatatacaaatatgaagtta
attaggctattccaaaattcaaaaaaaaaattcatttgaattaaaaacaa
tcatatgttttcattacttataattaatagtccattttataacataattg
taatggaacaagtttaataagtatccatctaatactttcatgtaatattt
agaatttgcttccaaaagtttgtatactctagtatattctgcaactctca
gtgaagacatgaaacttggatcagcatctcccagatctttgtaaggagaa
agactctgcttctctttgaagaagcaggtttcacttgaatacttttctaa
ctctagtcaataccttgtttgacttctaagaaattttcacatgtaattat
acagtgagcactattctgtattatgattaatatctttgccaaggtagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44253239_44254359
seq2: B6Ng01-287M02.b_49_1143 (reverse)

seq1  AATGATTGTAATGTGAATAGTGATGGACAGCTCAAGTACAACTGGAAACA  50
      ||||| ||||||| |||||||||||||||| || ||||||||| ||||||
seq2  AATGA-TGTAATG-GAATAGTGATGGACAGGTC-AGTACAACT-GAAACA  46

seq1  ATTCACAGTAAAGTTGATATTTGAATGATATGGATGAAACACAATGAAAA  100
      | |||||||||   ||||||||||||||||  |||| |||||||||||||
seq2  A-TCACAGTAA--GTGATATTTGAATGATAATGATGGAACACAATGAAAA  93

seq1  ACTCTAACTCTTTACCTAACTATACATGGTGGAGAGTAATAAATAAATAA  150
      ||||||  ||||||||| ||||||||||||||||||| || |||||   |
seq2  ACTCTACTTCTTTACCT-ACTATACATGGTGGAGAGT-ATTAATAA--TA  139

seq1  ATATAATAAATGAATAAATAAATAAATAAATAAATAAATAAATAAATAAA  200
      ||||||| ||||         ||||   |||||   ||||||| ||| ||
seq2  ATATAAT-AATG---------ATAATATAATAA--TAATAAATTAAT-AA  176

seq1  TAAATAAATAAGAAAGACATATATACAGACAATCCTAAGTAAACTAGGTA  250
      ||| ||| ||| | |  ||| | | ||| ||  | |||||||||||||||
seq2  TAATTAATTAATAGAAGCAT-TTTTCAG-CATCCTTAAGTAAACTAGGTA  224

seq1  GCTTGAAGTTTGAAAGCTAATGTGGTGGGTTAAGGATGGGGATAGGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAGTTTGAAAGCTAATGTGGTGGGTTAAGGATGGGGATAGGGAAG  274

seq1  GAATTTGTGAGACAAAAATACAGAGTAGATTTGAATCTAAAAAGATTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTGAGACAAAAATACAGAGTAGATTTGAATCTAAAAAGATTTGA  324

seq1  ATCTAATCTCTACCAAAAAAATAAGGGTTTTATATTATTTTTTCTTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATCTCTACCAAAAAAATAAGGGTTTTATATTATTTTTTCTTGGCT  374

seq1  GTAGGACACGGTTTTTGTTTAGACTTTTAGGGGCATCATCTCTAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACACGGTTTTTGTTTAGACTTTTAGGGGCATCATCTCTAAAGAAA  424

seq1  ACTGACTCTCCTTCCTTCCCTTGGTCTACATTCATTGCTAATAACTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTCTCCTTCCTTCCCTTGGTCTACATTCATTGCTAATAACTTCTC  474

seq1  AGTTAGGAGTATGATTTTATGAGTTCCTTCCACATCCATGCTCTTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGAGTATGATTTTATGAGTTCCTTCCACATCCATGCTCTTGGTTT  524

seq1  AGTGATTGTGATCTTTAAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTGTGATCTTTAAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  574

seq1  TAGCATTCAGTCATGTCTGCTGTAAGTTCCTGCGTACAATAGCTTGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCAGTCATGTCTGCTGTAAGTTCCTGCGTACAATAGCTTGTCAT  624

seq1  GTTTGGCAAATCGTAGTTTGAACAGCTTTTTAAAATAATTGTTTCTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCAAATCGTAGTTTGAACAGCTTTTTAAAATAATTGTTTCTTGCT  674

seq1  TAAGTCATTTAAATTTGTGCTTAGGTAGACAACAGAAAATAATAGAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATTTAAATTTGTGCTTAGGTAGACAACAGAAAATAATAGAAAAG  724

seq1  AAGTCAAAAATTGTCAAAATGAGCGAGGATAAATGGCAAGAAAAAGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAAAATTGTCAAAATGAGCGAGGATAAATGGCAAGAAAAAGTGAG  774

seq1  GTCGAAAGGTAAAGCCTGCTTCAGTGTATATATTTAAGAAACCTATAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAAAGGTAAAGCCTGCTTCAGTGTATATATTTAAGAAACCTATAATT  824

seq1  GAAAGTGTTTTGAAGTAAGGAAGTATCAGTGACTTTGACATACTGCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTTTTGAAGTAAGGAAGTATCAGTGACTTTGACATACTGCTGAG  874

seq1  ACCTTGGGAAGCATGAGTCAGCTCCTAAGTAAGTTATTGATGGCCATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGAAGCATGAGTCAGCTCCTAAGTAAGTTATTGATGGCCATTAA  924

seq1  AAGAACACTTCCATTAGAATTATGGGTAAGAAACTAGATTGGAATGAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACTTCCATTAGAATTATGGGTAAGAAACTAGATTGGAATGAGAC  974

seq1  AAATGGGTCTCTAATTCTAGAGTTATGGCAAAATAGAACATCGAAAATGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTCTCTAATTCTAGAGTTATGGCAAAATAGAACATCGAAAATGT  1024

seq1  CACATTAGAAACACAAGGAAAGCAACATAAACTCTAACAACCACCCATTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAGAAACACAAGGAAAGCAACATAAACTCTAACAACCACCCATTT  1074

seq1  AAATAGATAATGGAGGAATTC  1121
      |||||||||||||||||||||
seq2  AAATAGATAATGGAGGAATTC  1095


seq1: chr3_44166074_44167240
seq2: B6Ng01-287M02.g_66_1214

seq1  GAATTCAAGTTCTATTTTTCATTTATATTGGCATTTACAAGTAACAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTCTATTTTTCATTTATATTGGCATTTACAAGTAACAAGTA  50

seq1  ACAAGTAAACAGCTCCAATTAAGTTTGACCTGTGTTTGAAAATCAGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAAACAGCTCCAATTAAGTTTGACCTGTGTTTGAAAATCAGATGC  100

seq1  TGTTGAAGTGACTCATCAGACATAACTGGTTAGCTGTCCTTGTGCATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGTGACTCATCAGACATAACTGGTTAGCTGTCCTTGTGCATTCT  150

seq1  TTACATATGGCCACTGTTCCATTAACTTAACAAAATCTTGTTAAAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATGGCCACTGTTCCATTAACTTAACAAAATCTTGTTAAAAACAT  200

seq1  ATATTTAGAATTTTATAAAAAACACTGGAATTGTTTCTATTTTAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGAATTTTATAAAAAACACTGGAATTGTTTCTATTTTAAAAAAA  250

seq1  TATCACATGAATTCACTAAACTAGAATCACTGAAAAGTGGGCATAATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACATGAATTCACTAAACTAGAATCACTGAAAAGTGGGCATAATTAC  300

seq1  AAAACAAATAGATTTATGGAAAACATTGAAGCAATTTTAAAGTGTTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATAGATTTATGGAAAACATTGAAGCAATTTTAAAGTGTTGTGA  350

seq1  AAATGGCAAAGAGTCTAAAGGAAAAAGTAAAATAAGAAAAAAAAAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCAAAGAGTCTAAAGGAAAAAGTAAAATAAGAAAAAAAAAAAAAC  400

seq1  CCAAACTTATACAAACAAAAATAGAAAAGGCCAAAAAGAAAATGAAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTTATACAAACAAAAATAGAAAAGGCCAAAAAGAAAATGAAATCT  450

seq1  AATATTAAAAATAAAAAGTTTGCAACAAAACTGCTATTTTATTTATAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAAAATAAAAAGTTTGCAACAAAACTGCTATTTTATTTATAGAG  500

seq1  TTTAGTATTCAGTAATAAGATTGGCTTCATGAATTTCTATACTCAACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATTCAGTAATAAGATTGGCTTCATGAATTTCTATACTCAACTCT  550

seq1  CAATTTAAAAACAAATAATTCATTTTAATACAAATAGTATTAATTAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAAAACAAATAATTCATTTTAATACAAATAGTATTAATTAAAAC  600

seq1  CACTAAAGTTAATATAATTAAATATAAGAAAGATATGAGAATGTTAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAGTTAATATAATTAAATATAAGAAAGATATGAGAATGTTAGAAG  650

seq1  ATGAAAAGACTGTTTTAATGAACTAGGCCTAAGAGGACCAATACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGACTGTTTTAATGAACTAGGCCTAAGAGGACCAATACACACAC  700

seq1  ACACAAACACACACATGCATTGCATACATAAATATACAAATATGAAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACACACACATGCATTGCATACATAAATATACAAATATGAAGTTA  750

seq1  ATTAGGCTATTCCAAAATTC-AAAAAAAAATTCATTTGAATTAAAAACAA  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTAGGCTATTCCAAAATTCAAAAAAAAAATTCATTTGAATTAAAAACAA  800

seq1  TCATATGTTTTCATTACTTATAATTAATAGTCCATTTTATAACATAATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGTTTTCATTACTTATAATTAATAGTCCATTTTATAACATAATTG  850

seq1  TAATGGAACAAAGTTTAATAAGTATCCATCTAATACTTTCAATGTAATAT  899
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TAATGGAAC-AAGTTTAATAAGTATCCATCTAATACTTTC-ATGTAATAT  898

seq1  TTAGAA-TTGCTTCCAAAAGTTTGTATACTCTAGTATATTCTGCAACTCT  948
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTGCTTCCAAAAGTTTGTATACTCTAGTATATTCTGCAACTCT  948

seq1  CAGTGAAGACATGAAACTT-GATCAGCATCTCCCAGATCTTTGTAAAGGA  997
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  CAGTGAAGACATGAAACTTGGATCAGCATCTCCCAGATCTTTGT-AAGGA  997

seq1  GAAAAGACTTCTGCTTCCTCTTTGAAGAAGCCAGTTTTCCAACTTTAAAT  1047
      | |||||| ||||||| ||||||||||||| ||| ||||  |||| ||  
seq2  G-AAAGAC-TCTGCTT-CTCTTTGAAGAAG-CAGGTTTC--ACTTGAA--  1039

seq1  TACTTTTCTTACTCTAGTCAATTACTTTGTTTTGAACTCTAAAGAAATTT  1097
      ||||||||| ||||||||||| ||| ||| |||||  ||| |||||||||
seq2  TACTTTTCTAACTCTAGTCAA-TACCTTG-TTTGACTTCT-AAGAAATTT  1086

seq1  TCACAATGTAATTATACAGTTAAAGCACTTATTCCTGTATTAAATGATTA  1147
      |||| |||||||||||||||   ||||| |||| |||||||  |||||||
seq2  TCAC-ATGTAATTATACAGT--GAGCAC-TATT-CTGTATT--ATGATTA  1129

seq1  ATAATCTTGCCAAGGAAGAA  1167
      |||   ||||||||| ||||
seq2  ATATCTTTGCCAAGGTAGAA  1149


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