BAC Information

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BAC

Clone NameB6Ng01-287O04
Chromosome3 (Build37)
Map Location 22,518,561 - 22,639,903
singlet/doubletdoublet
Overlap geneLOC100040378
Upstream gene7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506, LOC675593
Downstream geneLOC623751, LOC100039548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287O04.bB6Ng01-287O04.g
ACCGA085691GA085692
length1,1441,115
definitionB6Ng01-287O04.b B6Ng01-287O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,518,561 - 22,519,377)(22,638,794 - 22,639,903)
sequence
gaattcttacatatttccatgttcagcggttgtcttgagaatacagcctt
tgtaatatttggaccacctctcctttatgatagcctcaaactttgttccc
aggataatttgctttaataatcctggtttcttaataatcacagataaatt
ttcagctttagctaaccacattcattgtccccaaaatgtcaagattttca
taatttactaattcttaatcagaagcataacaactatagtcatgctggag
tctatacttcatcctgagaacttacaagccaggtttatttctactttcta
gttttcaaagttcccagaaaagccccactgtactctgaggattcaatgag
ctttcctaatctaaacccccaaattcctttataatcaaaacagcaatcaa
ttcttctggtactataatttgtccttctttgttttctgttgatctgataa
acactataactaaaaggaactttcgagaggaaatagtttggctttcactt
gcatgtaactgtccatcttagagagaagttacgacagagctataaacacg
ataggaattccagcagcgtaggaagttgaacaagaaactaggaaagagca
ctgcttactggcttgctctcaatgactcatgctcagttaggtttttttaa
tacatataaaaactacctgtttaggaatcgcttgccaattatgggttggg
ccctcctatatcaagaagcaatcaagaaaatgcactaaggatatgatgta
tcagatagattcagtttctcaattaatattcattttccaggtaactcccg
tcagtgacaaatggacaataaaacctaaccaatatagcagagtagtcctg
gcgtgcatgctttctccttgctttttagaaaggaagcaggaaaacattga
tcccttgagaatcactttcaggtcttgccaattctctgactgtaagtaga
tttctcagaccaaagcatgtataccatctcatctttgcagcatgctatct
ctgactttgtgtctcattccctgaaatgtaagtgtgtagggggtgttggt
ccctggatcatctctatcatatgattacctacaacagcttttgtttgcat
agtctagaaacatctgagtgaattaaatttcgttcaaaattctc

gaattcaaatgttccacagtcttacaaatacataagaaattggtaacatt
tgcaaaacattttgaaactttgattaacaaacacttcctatttgcatgta
cggaaaacactttctccatgaaactaataatatttaacatacagagaatg
atctatttcttagaaatgcaccttaatattattcaaatgcaatcatagac
tatcttaaaattgattagatatgaaataggctcagtgaaaacagaaagta
aataaatcaatatatgtataaaatagagggaaatgattagatccaaagtc
tgacctttgagctaagaaaacaatatgctcagtttgtttattttaaaaag
gaagtataaaagcttagatacaaatggtcattccataaatccaacaaaaa
gtctttgaatgacttttcattccaaaagaattgctaagatctgaaatgcc
aagatactagaaaaatttctgtcctttaaaaaataatgagaatatagggc
gtgcttacataattttagtatattctgccttctaataaacacatgattgc
agacccccagctgtgcctacaaatacagcaaagtgaaaaaagggaaaact
gaacagagatgatatttgactgtacaacatacacatcttcaagcctagct
taagctataatgagccaaatttcatctaaggttaatgaatgtggtagtgg
ggcctaaggagatagggagaatcttcattctgcatcctttagtccgcatc
ttgcaggctgtttcttctactcaaaagacctgtttggagacagatattag
cacattgcagagtgtttctcatgaggcagagtgtttattgtgagactggt
cagagtggtgcagagagagagagagaatttagaaagttgagccagaataa
ctatcagtgaagtctgggaaaatgacatacacaataggatacatctagaa
gccctctctctttcttattatcccctggaaattttcttttctaccatgtt
aaatacactggtgatccaaaaatattttggtggtccacagttcaatattt
ttcagaagaacagaacggagacattatactgtatagaataagagttgctt
gaaagatttaactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_22518561_22519377
seq2: B6Ng01-287O04.b_381_1184

seq1  ATTCAATGAGCTTTCCTAATCTAAACCCCCAAATTCCTTTATAATCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGAGCTTTCCTAATCTAAACCCCCAAATTCCTTTATAATCAAAA  50

seq1  CAGCAATCAATTCTTCTGGTACTATAATTTGTCCTTCTTTGTTTTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCAATTCTTCTGGTACTATAATTTGTCCTTCTTTGTTTTCTGTT  100

seq1  GATCTGATAAACACTATAACTAAAAGGAACTTTCGAGAGGAAATAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATAAACACTATAACTAAAAGGAACTTTCGAGAGGAAATAGTTTG  150

seq1  GCTTTCACTTGCATGTAACTGTCCATCTTAGAGAGAAGTTACGACAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCACTTGCATGTAACTGTCCATCTTAGAGAGAAGTTACGACAGAGC  200

seq1  TATAAACACGATAGGAATTCCAGCAGCGTAGGAAGTTGAACAAGAAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACACGATAGGAATTCCAGCAGCGTAGGAAGTTGAACAAGAAACTA  250

seq1  GGAAAGAGCACTGCTTACTGGCTTGCTCTCAATGACTCATGCTCAGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGCACTGCTTACTGGCTTGCTCTCAATGACTCATGCTCAGTTAG  300

seq1  GTTTTTTTAATACATATAAAAACTACCTGTTTAGGAATCGCTTGCCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTAATACATATAAAAACTACCTGTTTAGGAATCGCTTGCCAATT  350

seq1  ATGGGTTGGGCCCTCCTATATCAAGAAGCAATCAAGAAAATGCACTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTGGGCCCTCCTATATCAAGAAGCAATCAAGAAAATGCACTAAGG  400

seq1  ATATGATGTATCAGATAGATTCAGTTTCTCAATTAATATTCATTTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGTATCAGATAGATTCAGTTTCTCAATTAATATTCATTTTCCAG  450

seq1  GTAACTCCCGTCAGTGACAAATGGACAATAAAACCTAACCAATATAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCCCGTCAGTGACAAATGGACAATAAAACCTAACCAATATAGCAG  500

seq1  AGTAGTCCTGGCGTGCATGCTTTCTCCTTGCTTTTTAGAAAGGAAGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCCTGGCGTGCATGCTTTCTCCTTGCTTTTTAGAAAGGAAGCAGG  550

seq1  AAAACATTGATCCCTTGAGAATCACTTTCAGGTCTTGCCAATTCTCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTGATCCCTTGAGAATCACTTTCAGGTCTTGCCAATTCTCTGAC  600

seq1  TGTAAGTAGATTTCTCAGACCAAAGCATGGTATACCATCTCCATCTTTGC  650
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  TGTAAGTAGATTTCTCAGACCAAAGCAT-GTATACCATCT-CATCTTTGC  648

seq1  AGGCATGGCTATCTTCCTGACTTTGTGTCTCATTTCCCTTGAAATGTAAG  700
      | |||| |||||||  ||||||||||||||||||  || |||||||||||
seq2  A-GCAT-GCTATCT--CTGACTTTGTGTCTCATT--CCCTGAAATGTAAG  692

seq1  TGTGTA-GGGGTG-TGGTCCCTGGATCATCTCTAATCAATTATGAATTAC  748
      |||||| |||||| ||||||||||||||||||| ||||  |||| |||| 
seq2  TGTGTAGGGGGTGTTGGTCCCTGGATCATCTCT-ATCA--TATG-ATTA-  737

seq1  CCTACAACAGCTTTTGTTTGCATAGTCTAGAACAATCTGGAAGTTGAATT  798
      ||||||||||||||||||||||||||||||||  |||||  || ||||||
seq2  CCTACAACAGCTTTTGTTTGCATAGTCTAGAAACATCTG--AG-TGAATT  784

seq1  AAATTT-GGTCAAAAATCTC  817
      |||||| | |||||| ||||
seq2  AAATTTCGTTCAAAATTCTC  804


seq1: chr3_22638794_22639903
seq2: B6Ng01-287O04.g_66_1180 (reverse)

seq1  CCAGGTAAATCTTTC-AGCAACTCT--ATCTATACCTGTAT-ATGTCTCC  46
      |||| |||||||||| |||||||||   |||||| | |||| ||||||||
seq2  CCAGTTAAATCTTTCAAGCAACTCTTATTCTATA-CAGTATAATGTCTCC  49

seq1  TTTCTGT--CTCTG-AAAATATTGAACTTGTGACCACAAATAT-TTTTTG  92
       ||||||   |||| |||||||||||||   |||||| || || ||||||
seq2  GTTCTGTTCTTCTGAAAAATATTGAACTGTGGACCACCAAAATATTTTTG  99

seq1  GATCACCAGTGTATTTAACATGGTAAGAAAGAAAATTTCCAGGGGATAAT  142
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  GATCACCAGTGTATTTAACATGGTAGAAAAGAAAATTTCCAGGGGATAAT  149

seq1  AAGAAAGAGGAGAGGGCTTCTAGATGTATCCTATTGTGTATGTCATTTTC  192
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGA-GAGAGGGCTTCTAGATGTATCCTATTGTGTATGTCATTTTC  198

seq1  CCAGACTTCACTGATAGTTATTTCTGGCTCAACTTTCTAAATTCTCTCTC  242
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAGACTTCACTGATAGTTA-TTCTGGCTCAACTTTCTAAATTCTCTCTC  247

seq1  TCTCTCTGCACCACTCTGACCAGTCTCACAATAAACACTCTGCCTCATGA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGCACCACTCTGACCAGTCTCACAATAAACACTCTGCCTCATGA  297

seq1  GAAACACTCTGCAATGTGCTAATATCTGTCTCCAAACAGGTCTTTTGAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTCTGCAATGTGCTAATATCTGTCTCCAAACAGGTCTTTTGAGT  347

seq1  AGAAGAAACAGCCTGCAAGATGCGGACTAAAGGATGCAGAATGAAGATTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAACAGCCTGCAAGATGCGGACTAAAGGATGCAGAATGAAGATTC  397

seq1  TCCCTATCTCCTTAGGCCCCACTACCACATTCATTAACCTTAGATGAAAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATCTCCTTAGGCCCCACTACCACATTCATTAACCTTAGATGAAAT  447

seq1  TTGGCTCATTATAGCTTAAGCTAGGCTTGAAGATGTGTATGTTGTACAGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCATTATAGCTTAAGCTAGGCTTGAAGATGTGTATGTTGTACAGT  497

seq1  CAAATATCATCTCTGTTCAGTTTTCCCTTTTTTCACTTTGCTGTATTTGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCATCTCTGTTCAGTTTTCCCTTTTTTCACTTTGCTGTATTTGT  547

seq1  AGGCACAGCTGGGGGTCTGCAATCATGTGTTTATTAGAAGGCAGAATATA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGCTGGGGGTCTGCAATCATGTGTTTATTAGAAGGCAGAATATA  597

seq1  CTAAAATTATGTAAGCACGCCCTATATTCTCATTATTTTTTAAAGGACAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTATGTAAGCACGCCCTATATTCTCATTATTTTTTAAAGGACAG  647

seq1  AAATTTTTCTAGTATCTTGGCATTTCAGATCTTAGCAATTCTTTTGGAAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCTAGTATCTTGGCATTTCAGATCTTAGCAATTCTTTTGGAAT  697

seq1  GAAAAGTCATTCAAAGACTTTTTGTTGGATTTATGGAATGACCATTTGTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCATTCAAAGACTTTTTGTTGGATTTATGGAATGACCATTTGTA  747

seq1  TCTAAGCTTTTATACTTCCTTTTTAAAATAAACAAACTGAGCATATTGTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCTTTTATACTTCCTTTTTAAAATAAACAAACTGAGCATATTGTT  797

seq1  TTCTTAGCTCAAAGGTCAGACTTTGGATCTAATCATTTCCCTCTATTTTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCTCAAAGGTCAGACTTTGGATCTAATCATTTCCCTCTATTTTA  847

seq1  TACATATATTGATTTATTTACTTTCTGTTTTCACTGAGCCTATTTCATAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATTGATTTATTTACTTTCTGTTTTCACTGAGCCTATTTCATAT  897

seq1  CTAATCAATTTTAAGATAGTCTATGATTGCATTTGAATAATATTAAGGTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCAATTTTAAGATAGTCTATGATTGCATTTGAATAATATTAAGGTG  947

seq1  CATTTCTAAGAAATAGATCATTCTCTGTATGTTAAATATTATTAGTTTCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAAGAAATAGATCATTCTCTGTATGTTAAATATTATTAGTTTCA  997

seq1  TGGAGAAAGTGTTTTCCGTACATGCAAATAGGAAGTGTTTGTTAATCAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGTGTTTTCCGTACATGCAAATAGGAAGTGTTTGTTAATCAAA  1047

seq1  GTTTCAAAATGTTTTGCAAATGTTACCAATTTCTTATGTATTTGTAAGAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAATGTTTTGCAAATGTTACCAATTTCTTATGTATTTGTAAGAC  1097

seq1  TGTGGAACATTTGAATTC  1110
      ||||||||||||||||||
seq2  TGTGGAACATTTGAATTC  1115


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