BAC Information

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BAC

Clone NameB6Ng01-288A21
Chromosome3 (Build37)
Map Location 150,930,656 - 151,061,999
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288A21.bB6Ng01-288A21.g
ACCGA085817GA085818
length1,2111,091
definitionB6Ng01-288A21.b B6Ng01-288A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,060,773 - 151,061,999)(150,930,656 - 150,931,727)
sequence
gaattctgaattttctgttaacccttcagccctcacccagtgattatgtg
gtgtcgtgtaggtgttgctttattgcgaaatggaaatggaaaatttgcta
agaggaaagcctccccgttatcctttatgttgtgcaaatatgtaacccaa
ttcttaaagaaaaaaataaagacacgtggaccatgatgaagataagctac
taagcgttaaaaaactgcacgatctttcccagaagaatcaaaaatggtgg
agttgggaagctggacagtttttggtttgtctgtttgttttgttttgttt
tgatttgttttgttttgttttgttttgttttgtattttgaggcagggttt
ctctgtgtagccctggctgtcctggaactcactctgtagaccaagctggc
ctcaaattcagaaatctgcctgcctctggctcccaagtgctgggattaaa
ggcgtgtgccaccattgcccagtctgaagctggaaagtttaagtcagaga
tttataaaacaaaaatcttctgcaaaaataataccaaaaggaaaggctgg
aaaacctgacatgtttgtgttcatttcggtaaacagcattagaatgtggc
aaattgggtcggagatggaggcttgtaaaggccaggaataattttaagac
cacattctattatttcttgaaattgagtttttagaagttcttttgaaata
gatattacttcagctttacctgggcggtcatcagtccatttattattgga
tgctattatatgtattagaggagacaggccaatcctttgaggtctagaag
ttttacttaagattaacttgtacacatttaaaagaatatacacttaaagg
acttggaggtaataagatgaaaataaacagctttggctgttatggttgca
gctgaatataaagcagaaatgagggaccactgctaacaccaaggaaggct
gtgcttaagggatgtagttggagcttcaacataccactgaaagctgcttt
tacaacccacatgtatcaatatgtattcattaaacagattttaattccat
agtaacacccttttagccaagataaatcaatatatgttggccaatataaa
gtccctatgtcctccgttccagcctcctctttgaaccttataagagtgga
aaccgggaatctgtaatgtctgaaccaggataaatcgtatgtacctcaca
tatattgagac
gaattcatcactgatctgaaaagcattcttccttattttaagacttcctt
ttaggaacctctgagtccctgtagtcattactttatatccgtggttcttg
ggtagagaatactttcatagatacaatggttctatttctatggggacatt
aaaactataataaacactcatttcctcctggtttaacacatcttacattt
atcaggagtggaatggttcccaaaggagcaggcaaagttaagacccactc
caatttcagtatattggaggaaagaagaggtcatttcagtgaaacagctg
agagtacattaactctgctcctaaccaaagaacctaacagtgaaagatat
gatctagtctctatattcacctcaacactagccagcgcatcatctccaaa
ggagtctctgaagaaacagaaatgaaggaaggtaggaaccagtttagggt
atggtcccttccgctctcacttcagggacacgcaacctttgtttatgatg
gtagaaatggcccaaggcctgtgaagttccatggcatcgacaggtgaggg
tatctgtgtacaccattctctccctctcactcttgctcagttgcttccaa
ttttgcctgtatctccactctctctattccaatcaagatggtgctagaat
gttttaataataacaatcaagctcaatgggtgatgcttatattggtttga
acttttctcttggttacaaaggaattaataaacactgtgtaaaattaaag
gacaaacagcacgtgacagagaatcaaagtagcattgcctcagatcttat
tacattgtgcattttcagttttagtcaatacatatgtaaaatacagatgt
ttaaattttttatttaattttgtccccctcctggtccaccctctgactaa
ttccacatcccctccttgcccccacaccccgtctctactagggatgttcc
ccaaccacccacctcacaggacctccccaattccctggggacctagagtc
tcttggaggggttaggtgcattcttctctgactgaacccagacctgggct
tcattaattttttaacatgaattttaaggcaggtaaattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_151060773_151061999
seq2: B6Ng01-288A21.b_44_1254 (reverse)

seq1  GTCTCAATATATATGTTGAGGTATATAAAGAATATTTTATCTGTGTGTTT  50
      ||||||||||||    ||||||| || | ||    ||||||    || ||
seq2  GTCTCAATATAT---GTGAGGTACAT-ACGA----TTTATC---CTGGTT  39

seq1  CAGACA-TACAGATTTCCCGTGTTCTACTCATATAGGTTAGAAAGAGGAG  99
      |||||| |||||| ||||||  ||| |||| |||| | |  |||||||| 
seq2  CAGACATTACAGA-TTCCCGGTTTCCACTCTTATAAGGTTCAAAGAGGA-  87

seq1  GGCTGAGAAGGGAGGACATAGGGAACTTATA-TGGCCAACATATA-TGAT  147
      ||||| ||| ||||||||||||||  ||||| ||||||||||||| ||||
seq2  GGCTG-GAACGGAGGACATAGGGACTTTATATTGGCCAACATATATTGAT  136

seq1  ATA-CTTGGCTAAAAAGGTGTTACTATGGAATTAAAAATCTGTTTAATGA  196
       || ||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  TTATCTTGGCTAAAAGGGTGTTACTATGGAATT-AAAATCTGTTTAATGA  185

seq1  ATACATATTGATACATTGTGGGTTTGTAAAAGGCAGCTTTCAGTGGTATT  246
      ||||||||||||||| |||||| |||||||| |||||||||||||||| |
seq2  ATACATATTGATACA-TGTGGG-TTGTAAAA-GCAGCTTTCAGTGGTA-T  231

seq1  GTTGAAGCTCCAACTACATCCCTTAAGCACAGCCCTTCCTTGGTGTTAGC  296
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTGAAGCTCCAACTACATCCCTTAAGCACAG-CCTTCCTTGGTGTTAGC  280

seq1  AGTGGTCCCTCATTTCTGCTTTATATTCAGCTGCAACCATAAACAGCCAA  346
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTGGTCCCTCATTTCTGCTTTATATTCAGCTGCAACCAT-AACAGCCAA  329

seq1  AGCTGTTTATTTTCATCTTATTACCTCCAAGTCC-TTAAGTGTATATTCT  395
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGCTGTTTATTTTCATCTTATTACCTCCAAGTCCTTTAAGTGTATATTCT  379

seq1  TTTAAATGTGTACAAGTTAATCTTAAGTAAAACTTCTAGACCTCAAAGGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTGTACAAGTTAATCTTAAGTAAAACTTCTAGACCTCAAAGGA  429

seq1  TTGGCCTGTCTCCTCTAATACATATAATAGCATCCAATAATAAATGGACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTGTCTCCTCTAATACATATAATAGCATCCAATAATAAATGGACT  479

seq1  GATGACCGCCCAGGTAAAGCTGAAGTAATATCTATTTCAAAAGAACTTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCGCCCAGGTAAAGCTGAAGTAATATCTATTTCAAAAGAACTTCT  529

seq1  AAAAACTCAATTTCAAGAAATAATAGAATGTGGTCTTAAAATTATTCCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCAATTTCAAGAAATAATAGAATGTGGTCTTAAAATTATTCCTG  579

seq1  GCCTTTACAAGCCTCCATCTCCGACCCAATTTGCCACATTCTAATGCTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTACAAGCCTCCATCTCCGACCCAATTTGCCACATTCTAATGCTGT  629

seq1  TTACCGAAATGAACACAAACATGTCAGGTTTTCCAGCCTTTCCTTTTGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGAAATGAACACAAACATGTCAGGTTTTCCAGCCTTTCCTTTTGGT  679

seq1  ATTATTTTTGCAGAAGATTTTTGTTTTATAAATCTCTGACTTAAACTTTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTGCAGAAGATTTTTGTTTTATAAATCTCTGACTTAAACTTTC  729

seq1  CAGCTTCAGACTGGGCAATGGTGGCACACGCCTTTAATCCCAGCACTTGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCAGACTGGGCAATGGTGGCACACGCCTTTAATCCCAGCACTTGG  779

seq1  GAGCCAGAGGCAGGCAGATTTCTGAATTTGAGGCCAGCTTGGTCTACAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAGGCAGGCAGATTTCTGAATTTGAGGCCAGCTTGGTCTACAGA  829

seq1  GTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGCCTCAAAATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGCCTCAAAATA  879

seq1  CAAAACAAAACAAAACAAAACAAAACAAATCAAAACAAAACAAAACAAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAAACAAAACAAATCAAAACAAAACAAAACAAAC  929

seq1  AGACAAACCAAAAACTGTCCAGCTTCCCAACTCCACCATTTTTGATTCTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACCAAAAACTGTCCAGCTTCCCAACTCCACCATTTTTGATTCTT  979

seq1  CTGGGAAAGATCGTGCAGTTTTTTAACGCTTAGTAGCTTATCTTCATCAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGATCGTGCAGTTTTTTAACGCTTAGTAGCTTATCTTCATCAT  1029

seq1  GGTCCACGTGTCTTTATTTTTTTCTTTAAGAATTGGGTTACATATTTGCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACGTGTCTTTATTTTTTTCTTTAAGAATTGGGTTACATATTTGCA  1079

seq1  CAACATAAAGGATAACGGGGAGGCTTTCCTCTTAGCAAATTTTCCATTTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATAAAGGATAACGGGGAGGCTTTCCTCTTAGCAAATTTTCCATTTC  1129

seq1  CATTTCGCAATAAAGCAACACCTACACGACACCACATAATCACTGGGTGA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCGCAATAAAGCAACACCTACACGACACCACATAATCACTGGGTGA  1179

seq1  GGGCTGAAGGGTTAACAGAAAATTCAGAATTC  1227
      ||||||||||||||||||||||||||||||||
seq2  GGGCTGAAGGGTTAACAGAAAATTCAGAATTC  1211

seq1: chr3_150930656_150931727
seq2: B6Ng01-288A21.g_70_1160

seq1  GAATTCATCACTGATCTGAAAAGCATTCTTCCTTATTTTAAGACTTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACTGATCTGAAAAGCATTCTTCCTTATTTTAAGACTTCCTT  50

seq1  TTAGGAACCTCTGAGTCCCTGTAGTCATTACTTTATATCCGTGGTTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAACCTCTGAGTCCCTGTAGTCATTACTTTATATCCGTGGTTCTTG  100

seq1  GGTAGAGAATACTTTCATAGATACAATGGTTCTATTTCTATGGGGACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGAATACTTTCATAGATACAATGGTTCTATTTCTATGGGGACATT  150

seq1  AAAACTATAATAAACACTCATTTCCTCCTGGTTTAACACATCTTACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATAATAAACACTCATTTCCTCCTGGTTTAACACATCTTACATTT  200

seq1  ATCAGGAGTGGAATGGTTCCCAAAGGAGCAGGCAAAGTTAAGACCCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAGTGGAATGGTTCCCAAAGGAGCAGGCAAAGTTAAGACCCACTC  250

seq1  CAATTTCAGTATATTGGAGGAAAGAAGAGGTCATTTCAGTGAAACAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCAGTATATTGGAGGAAAGAAGAGGTCATTTCAGTGAAACAGCTG  300

seq1  AGAGTACATTAACTCTGCTCCTAACCAAAGAACCTAACAGTGAAAGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACATTAACTCTGCTCCTAACCAAAGAACCTAACAGTGAAAGATAT  350

seq1  GATCTAGTCTCTATATTCACCTCAACACTAGCCAGCGCATCATCTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGTCTCTATATTCACCTCAACACTAGCCAGCGCATCATCTCCAAA  400

seq1  GGAGTCTCTGAAGAAACAGAAATGAAGGAAGGTAGGAACCAGTTTAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTCTGAAGAAACAGAAATGAAGGAAGGTAGGAACCAGTTTAGGGT  450

seq1  ATGGTCCCTTCCGCTCTCACTTCAGGGACACGCAACCTTTGTTTATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCCTTCCGCTCTCACTTCAGGGACACGCAACCTTTGTTTATGATG  500

seq1  GTAGAAATGGCCCAAGGCCTGTGAAGTTCCATGGCATCGACAGGTGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATGGCCCAAGGCCTGTGAAGTTCCATGGCATCGACAGGTGAGGG  550

seq1  TATCTGTGTACACCATTCTCTCCCTCTCACTCTTGCTCAGTTGCTTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGTACACCATTCTCTCCCTCTCACTCTTGCTCAGTTGCTTCCAA  600

seq1  TTTTGCCTGTATCTCCACTCTCTCTATTCCAATCAAGATGGTGCTAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTGTATCTCCACTCTCTCTATTCCAATCAAGATGGTGCTAGAAT  650

seq1  GTTTTAATAATAACAATCAAGCTCAATGGGTGATGCTTATATTGGTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATAATAACAATCAAGCTCAATGGGTGATGCTTATATTGGTTTGA  700

seq1  ACTTTTCTCTTGGTTACAAAGGAATTAATAAACACTGTGTAAAATTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTCTTGGTTACAAAGGAATTAATAAACACTGTGTAAAATTAAAG  750

seq1  GACAAACAGCACGTGACAGAGAATCAAAGTAGCATTGCCTCAGATCTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAGCACGTGACAGAGAATCAAAGTAGCATTGCCTCAGATCTTAT  800

seq1  TACATTGTGCATTTTCAGTTTTAGTC-ATACATATGTAAAATACAGATGT  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TACATTGTGCATTTTCAGTTTTAGTCAATACATATGTAAAATACAGATGT  850

seq1  TTAAA-TTTTTATTTAATTTTGTCCCCCTCCTGGTCCACCCTCTGACT-A  897
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  TTAAATTTTTTATTTAATTTTGTCCCCCTCCTGGTCCACCCTCTGACTAA  900

seq1  TTCCACATCCCCTCCCTG-CCCCACA-CCCGTCTCTACTA-GGATG-TCC  943
      ||||||||||||||| || ||||||| ||||||||||||| ||||| |||
seq2  TTCCACATCCCCTCCTTGCCCCCACACCCCGTCTCTACTAGGGATGTTCC  950

seq1  CCAA-CACCCACCCCACAAGACCTCCCC-ATTCCCT-GGGACCTAGAGTC  990
      |||| |||||||| |||| ||||||||| ||||||| |||||||||||||
seq2  CCAACCACCCACCTCACAGGACCTCCCCAATTCCCTGGGGACCTAGAGTC  1000

seq1  TCTTG--AGGGTTAGGTGCA-TCTTCTCTGACTGAACCCAGACCT-GGCT  1036
      |||||   |||||||||||| |||||||||||||||||||||||| ||||
seq2  TCTTGGAGGGGTTAGGTGCATTCTTCTCTGACTGAACCCAGACCTGGGCT  1050

seq1  TCATTA--TTTTTAATATGAA-TTTAAG--TAGTAAATTAG  1072
      ||||||  ||||||| ||||| ||||||    |||||||||
seq2  TCATTAATTTTTTAACATGAATTTTAAGGCAGGTAAATTAG  1091