BAC Information

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BAC

Clone NameB6Ng01-288E04
Chromosome3 (Build37)
Map Location 18,708,250 - 18,838,721
singlet/doubletdoublet
Overlap genenone
Upstream geneCypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288E04.bB6Ng01-288E04.g
ACCGA085971GA085972
length1,1171,114
definitionB6Ng01-288E04.b B6Ng01-288E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,837,613 - 18,838,721)(18,708,250 - 18,709,368)
sequence
gaattcccatctttctgtaagagcagtaagtgctcttcactgctgagcta
cttagtccaccctgtccttaacagtttaagaatctttagggtttctagca
aagaatgaaacagtaagctaaaaggtcttcaggaaaattgaatgagttgt
ttgggagacaaaaagatcaattcctggtaggttcttataaagaaggcgat
gtgcactgtattgcttaagagggatgcacagcagccttcgagtcaatata
acctgtacttccttaatgcctagtgtagctgcggcactgttccaaagaac
aagcaatgacaccgtgggtctgcctccagtaatactggatcctcacagaa
tggaaactcagaggaagaggctagctaccaaaagagtgagtggtcaagaa
gccagcaaaaggaaggctgcgtgcttaagaatcatcctctaaacgccaca
gtttaggaggggatcttccacccttccccggaggctagctgtttctttct
acagcaaactgcattgttgattaatcctcagcttccataaacttcaaatg
gaccatacaaattgtctagtgctactcaaatccctctacggaggttactg
tttctgcactaactacctagtattctgtttttattagaaatgtgccttac
cttggctattgaggggaaagaaaaggaaaacggtaccccagagttcagca
aggccataaaccatcagagatccccagagaagctgccctagggcccgtgc
aatgacgagagtgtcaccactgcagatcataatagccagggcgagggttt
cgttcagctccctggtgatttggtacaggagtgctgtccgctgacatccc
aagaggcgaacagcatcagtgactgtgggccctgattggggcagtgaaat
attgctggcaaaaattaaaaggtccccgtgtcaaaataattcatgctatg
catatcttccaatctgatgagaccgcggatatctgggattagcaagatta
ataaaaccgatcaaggctacagttaaacaatttaagcaagagaagctggt
cattttgtaggtgttcactgtcaggtcaagggggtcagaagtgaaatgaa
aggctttctcctggtaa
gaattcaccctaaagaagtagagtagatatttggagagatagttggtaat
cagcttgactttcaagcatgagaaactgagttccatcctcaaaacacata
aaaagccaggatgggtggagtattacacaatcacaaaatgggaggtagaa
gctggtatgtctctggggcctgctgattagtcagtctatgggaagagatc
ctttctcaaaaataaataagtacgtacatacatacatacatatatacata
cataatcctgaagaatgatatctgaagttgttttctggattccataccat
gtgcatacatgtctcatgatctttcacctacatgcatgcataaaaataac
ttctcttatacacaaaagaaattgtgtgaccaaaatttcatggtataact
aggaaaatggagtttcaaactcaggacagtcttactccaaagcaaagcct
cttgattctgctgatgaacactacagttaagcataatcatatctagtgga
ataattatctccaaagagcccatttcaattaattcatgtcaacttggaaa
gaggtctctaatcgtgagccaattatacccagtgaaaattagagaacatt
agttaaatgtttaaattattggttatctgcccagactgagcaaggttaat
ggagttaagactcaggggtacaacaatgaagaactacacaaaggtaaggg
catggggacaaatcaaggagaaatgggagtaagacatgattcctacctct
caggggtttacaaacaatgacagtagaaaacttgtgagccagtgggtagg
ggaacaaagaatgcaaagagggaaagtggttaaaagcaccaagaaagcat
tactttcaaagatgacttcacaagtggaccatccagactgatgaggattg
cacagatgctcagaaggaatactgcatgccaacaaaagatacatatgaaa
gcaagagaagaagcttaggagcatcttgtggggaaagaaaaaaccaaaga
acacacatctgccccacacctgagtacagagaccagcagacccaggcacc
caggtaggtccacccaacatggaaatgggctcttcagtcttgagcagtgc
ctggagccagacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18837613_18838721
seq2: B6Ng01-288E04.b_48_1164 (reverse)

seq1  TTACC-GGAGAAAGCCTTTCATTCCAC-TCTGACCCCC-TGAACTGACAG  47
      ||||| ||||||||||||||||| ||| |||||||||| ||| |||||||
seq2  TTACCAGGAGAAAGCCTTTCATTTCACTTCTGACCCCCTTGACCTGACAG  50

seq1  TG-ACACCTACAAAATGAACAGC-TCTCCTGCTTAAATTGTTTAACTGTA  95
      || ||||||||||||||| |||| |||| |||||||||||||||||||||
seq2  TGAACACCTACAAAATGACCAGCTTCTCTTGCTTAAATTGTTTAACTGTA  100

seq1  GCC-TGATCGGTTTTATT-ATCTTGCTAAT-CCAGATATCCGCGGTCTCA  142
      ||| |||||||||||||| ||||||||||| |||||||||||||||||||
seq2  GCCTTGATCGGTTTTATTAATCTTGCTAATCCCAGATATCCGCGGTCTCA  150

seq1  TCAGAATGGAAGATATGCATAGCATGAATTATTTTGACACGGGGACCTTT  192
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGGAAGATATGCATAGCATGAATTATTTTGACACGGGGACCTTT  200

seq1  TAATTTTTGCCAGCAATATTTCACTGCCCCAATCAGGGCCCACAGTCACT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTGCCAGCAATATTTCACTGCCCCAATCAGGGCCCACAGTCACT  250

seq1  GATGCTGTTCGCCTCTTGGGATGTCAGCGGACAGCACTCCTGTACCAAAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTTCGCCTCTTGGGATGTCAGCGGACAGCACTCCTGTACCAAAT  300

seq1  CACCAGGGAGCTGAACGAAACCCTCGCCCTGGCTATTATGATCTGCAGTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGGAGCTGAACGAAACCCTCGCCCTGGCTATTATGATCTGCAGTG  350

seq1  GTGACACTCTCGTCATTGCACGGGCCCTAGGGCAGCTTCTCTGGGGATCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACTCTCGTCATTGCACGGGCCCTAGGGCAGCTTCTCTGGGGATCT  400

seq1  CTGATGGTTTATGGCCTTGCTGAACTCTGGGGTACCGTTTTCCTTTTCTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGTTTATGGCCTTGCTGAACTCTGGGGTACCGTTTTCCTTTTCTT  450

seq1  TCCCCTCAATAGCCAAGGTAAGGCACATTTCTAATAAAAACAGAATACTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCAATAGCCAAGGTAAGGCACATTTCTAATAAAAACAGAATACTA  500

seq1  GGTAGTTAGTGCAGAAACAGTAACCTCCGTAGAGGGATTTGAGTAGCACT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTAGTGCAGAAACAGTAACCTCCGTAGAGGGATTTGAGTAGCACT  550

seq1  AGACAATTTGTATGGTCCATTTGAAGTTTATGGAAGCTGAGGATTAATCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTTGTATGGTCCATTTGAAGTTTATGGAAGCTGAGGATTAATCA  600

seq1  ACAATGCAGTTTGCTGTAGAAAGAAACAGCTAGCCTCCGGGGAAGGGTGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAGTTTGCTGTAGAAAGAAACAGCTAGCCTCCGGGGAAGGGTGG  650

seq1  AAGATCCCCTCCTAAACTGTGGCGTTTAGAGGATGATTCTTAAGCACGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCCCTCCTAAACTGTGGCGTTTAGAGGATGATTCTTAAGCACGCA  700

seq1  GCCTTCCTTTTGCTGGCTTCTTGACCACTCACTCTTTTGGTAGCTAGCCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTTTTGCTGGCTTCTTGACCACTCACTCTTTTGGTAGCTAGCCT  750

seq1  CTTCCTCTGAGTTTCCATTCTGTGAGGATCCAGTATTACTGGAGGCAGAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGAGTTTCCATTCTGTGAGGATCCAGTATTACTGGAGGCAGAC  800

seq1  CCACGGTGTCATTGCTTGTTCTTTGGAACAGTGCCGCAGCTACACTAGGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTGTCATTGCTTGTTCTTTGGAACAGTGCCGCAGCTACACTAGGC  850

seq1  ATTAAGGAAGTACAGGTTATATTGACTCGAAGGCTGCTGTGCATCCCTCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGAAGTACAGGTTATATTGACTCGAAGGCTGCTGTGCATCCCTCT  900

seq1  TAAGCAATACAGTGCACATCGCCTTCTTTATAAGAACCTACCAGGAATTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATACAGTGCACATCGCCTTCTTTATAAGAACCTACCAGGAATTG  950

seq1  ATCTTTTTGTCTCCCAAACAACTCATTCAATTTTCCTGAAGACCTTTTAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTGTCTCCCAAACAACTCATTCAATTTTCCTGAAGACCTTTTAG  1000

seq1  CTTACTGTTTCATTCTTTGCTAGAAACCCTAAAGATTCTTAAACTGTTAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTTTCATTCTTTGCTAGAAACCCTAAAGATTCTTAAACTGTTAA  1050

seq1  GGACAGGGTGGACTAAGTAGCTCAGCAGTGAAGAGCACTTACTGCTCTTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGTGGACTAAGTAGCTCAGCAGTGAAGAGCACTTACTGCTCTTA  1100

seq1  CAGAAAGATGGGAATTC  1109
      |||||||||||||||||
seq2  CAGAAAGATGGGAATTC  1117

seq1: chr3_18708250_18709368
seq2: B6Ng01-288E04.g_66_1179

seq1  GAATTCACCCTAAAGAAGTAGAGTAGATATTTGGAGAGATAGTTGGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTAAAGAAGTAGAGTAGATATTTGGAGAGATAGTTGGTAAT  50

seq1  CAGCTTGACTTTCAAGCATGAGAAACTGAGTTCCATCCTCAAAACACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGACTTTCAAGCATGAGAAACTGAGTTCCATCCTCAAAACACATA  100

seq1  AAAAGCCAGGATGGGTGGAGTATTACACAATCACAAAATGGGAGGTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAGGATGGGTGGAGTATTACACAATCACAAAATGGGAGGTAGAA  150

seq1  GCTGGTATGTCTCTGGGGCCTGCTGATTAGTCAGTCTATGGGAAGAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTATGTCTCTGGGGCCTGCTGATTAGTCAGTCTATGGGAAGAGATC  200

seq1  CTTTCTCAAAAATAAATAAGTACGTACATACATACATACATATATACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAAAAATAAATAAGTACGTACATACATACATACATATATACATA  250

seq1  CATAATCCTGAAGAATGATATCTGAAGTTGTTTTCTGGATTCCATACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCCTGAAGAATGATATCTGAAGTTGTTTTCTGGATTCCATACCAT  300

seq1  GTGCATACATGTCTCATGATCTTTCACCTACATGCATGCATAAAAATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATACATGTCTCATGATCTTTCACCTACATGCATGCATAAAAATAAC  350

seq1  TTCTCTTATACACAAAAGAAATTGTGTGACCAAAATTTCATGGTATAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTATACACAAAAGAAATTGTGTGACCAAAATTTCATGGTATAACT  400

seq1  AGGAAAATGGAGTTTCAAACTCAGGACAGTCTTACTCCAAAGCAAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATGGAGTTTCAAACTCAGGACAGTCTTACTCCAAAGCAAAGCCT  450

seq1  CTTGATTCTGCTGATGAACACTACAGTTAAGCATAATCATATCTAGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTCTGCTGATGAACACTACAGTTAAGCATAATCATATCTAGTGGA  500

seq1  ATAATTATCTCCAAAGAGCCCATTTCAATTAATTCATGTCAACTTGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATCTCCAAAGAGCCCATTTCAATTAATTCATGTCAACTTGGAAA  550

seq1  GAGGTCTCTAATCGTGAGCCAATTATACCCAGTGAAAATTAGAGAACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTCTAATCGTGAGCCAATTATACCCAGTGAAAATTAGAGAACATT  600

seq1  AGTTAAATGTTTAAATTATTGGTTATCTGCCCAGACTGAGCAAGGTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATGTTTAAATTATTGGTTATCTGCCCAGACTGAGCAAGGTTAAT  650

seq1  GGAGTTAAGACTCAGGGGTACAACAATGAAGAACTACACAAAGGTAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAAGACTCAGGGGTACAACAATGAAGAACTACACAAAGGTAAGGG  700

seq1  CATGGGGACAAATCAAGGAGAAATGGGAGTAAGACATGATTCCTACCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGACAAATCAAGGAGAAATGGGAGTAAGACATGATTCCTACCTCT  750

seq1  CAGGGGTTTACAAACAATGACAGTAGAAAACTTGTGAGCCAGTGGGTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTTTACAAACAATGACAGTAGAAAACTTGTGAGCCAGTGGGTAGG  800

seq1  GGAACAAAGAATGCAAAGAGGGAAAGTGGTTAAAAGCACCAAGAAAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAGAATGCAAAGAGGGAAAGTGGTTAAAAGCACCAAGAAAGCAT  850

seq1  TACTTTCAAAGATGACTTCACAAGTGGACCATCCAGACTGATGAGGATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCAAAGATGACTTCACAAGTGGACCATCCAGACTGATGAGGATTG  900

seq1  CACAGATGCTCAGAAGAAATACTGCATGCCAACAAAAGATACATATGAAA  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CACAGATGCTCAGAAGGAATACTGCATGCCAACAAAAGATACATATGAAA  950

seq1  GCAAGAGAAGAAGCTTAGGAAGCATCTTTGTGGGGAAAG-AAAAACCAAA  999
      ||||||||||||||||||| |||||| |||||||||||| ||||||||||
seq2  GCAAGAGAAGAAGCTTAGG-AGCATC-TTGTGGGGAAAGAAAAAACCAAA  998

seq1  G-ACACACATCTGCCCCAACACCTGAAGTAACAGAGACCAGCAGAACCCA  1048
      | ||||||||||||||| ||||||| ||| |||||||||||||| |||||
seq2  GAACACACATCTGCCCC-ACACCTG-AGT-ACAGAGACCAGCAG-ACCCA  1044

seq1  GGCACCCAGG-AAGTCCACCCAAACAGGGAAATGGGCTCCTTCCAGTC-T  1096
      |||||||||| | |||||||| |||| ||||||||||||  | ||||| |
seq2  GGCACCCAGGTAGGTCCACCC-AACATGGAAATGGGCTC--TTCAGTCTT  1091

seq1  GAGCCAGTGCCCTGAG-CAGACAT  1119
      ||| |||||||  ||| |||||||
seq2  GAG-CAGTGCCTGGAGCCAGACAT  1114