BAC Information

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BAC

Clone NameB6Ng01-288F13
Chromosome3 (Build37)
Map Location 125,543,832 - 125,544,934
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668820, Ndst4
Downstream geneUgt8a, Arsj, Camk2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288F13.bB6Ng01-288F13.g
ACCGA086033GA086034
length3661,101
definitionB6Ng01-288F13.b B6Ng01-288F13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgtttagctctgtgccccattttttaatagtattatttaattttctga
gactatgccagtgcctagcaaatacagaagtggatgctcatagtcagcta
ttggatggaacacagggtccccaatggaggagctagagaaagtactcaag
gagctgaaggggtctgcaacctgatagttggaacaacaatatgaactaac
cagtacccccagagctcgtgtctctagctgcatatgtagcagaagatggc
ctagtcagacatcattgggaagagaggccccttggtgttgcaaaatttat
atgccccaatacatgggaatgccaggaccaagaagtgggagtgggtgggt
aggggagcagggtgtg

gaattcatctttttaataaactccaatattggcatatattattttagtaa
tagagtagtcactgctaaataggtagatgctgattgtgggccaaacactc
tgctatgtgtctcatctgtattagatcacttaactatatgataaaatgat
ttgctaggttaaaactgttaaaggatttcaggaaaaagaaacaatgcatt
tagtttttacctgtggtaggccactacttaatatgagggttcaaaagtcc
caaagaaggaaaatggatatatgaatgaaaattaaaataatggagatcaa
taaagaaaatttagctactgagaactaacatagatccattgtgatccctg
gttaacactcaaaaatatctaaaaataaacaaactttaaagtagtcctat
tagttgcttcacaaagaaacaaaagacaccagttacagaagtcacagctg
tttcaatattttctaagttctacagtaaacctcttgtaaaaccacggaat
agtttccattagctctatatgacacaaagaaaaagaaaaagatcttgaat
cataaatattcaatgtttttcttataatgtatatatagtttgggcacact
tttatgtaaggccctgtttcttcctgaaggactctcctacaataaaactc
ccgtgtcacagtagaaatctgtcacagtgaagccatactgacatactgtc
atgtgaggtttttgtgttcgtataagattcatttagagttatagattcag
tgagtttccgaaatgtatcacaaattgtagttgtttcattgacctgaaac
tccatcatcttcagcttgctcatcttctaaccaacttccaagcattgatt
gctttactctcccagaagttttgtcttttccaaaatgtgaaatgacttgg
atcatacagtatgtagcccttttcatgttgacttcacttaaatatgggtt
ttaatattctgtcatgataaatgcccagttttaatagatcactaggcatc
ttaacagaaaaacatattgatgatgctctgtttaggaagagtgcataata
atctgcactaaaatagcaaatttatatacatacatattatgaatatatat
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125543832_125544934
seq2: B6Ng01-288F13.g_69_1169

seq1  GAATTCATCTTTTTAATAAACTCCAATATTGGCATATATTATTTTAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTTTAATAAACTCCAATATTGGCATATATTATTTTAGTAA  50

seq1  TAGAGTAGTCACTGCTAAATAGGTAGATGCTGATTGTGGGCCAAACACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAGTCACTGCTAAATAGGTAGATGCTGATTGTGGGCCAAACACTC  100

seq1  TGCTATGTGTCTCATCTGTATTAGATCACTTAACTATATGATAAAATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGTGTCTCATCTGTATTAGATCACTTAACTATATGATAAAATGAT  150

seq1  TTGCTAGGTTAAAACTGTTAAAGGATTTCAGGAAAAAGAAACAATGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGGTTAAAACTGTTAAAGGATTTCAGGAAAAAGAAACAATGCATT  200

seq1  TAGTTTTTACCTGTGGTAGGCCACTACTTAATATGAGGGTTCAAAAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTACCTGTGGTAGGCCACTACTTAATATGAGGGTTCAAAAGTCC  250

seq1  CAAAGAAGGAAAATGGATATATGAATGAAAATTAAAATAATGGAGATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGGAAAATGGATATATGAATGAAAATTAAAATAATGGAGATCAA  300

seq1  TAAAGAAAATTTAGCTACTGAGAACTAACATAGATCCATTGTGATCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAATTTAGCTACTGAGAACTAACATAGATCCATTGTGATCCCTG  350

seq1  GTTAACACTCAAAAATATCTAAAAATAAACAAACTTTAAAGTAGTCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACACTCAAAAATATCTAAAAATAAACAAACTTTAAAGTAGTCCTAT  400

seq1  TAGTTGCTTCACAAAGAAACAAAAGACACCAGTTACAGAAGTCACAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCTTCACAAAGAAACAAAAGACACCAGTTACAGAAGTCACAGCTG  450

seq1  TTTCAATATTTTCTAAGTTCTACAGTAAACCTCTTGTAAAACCACGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATTTTCTAAGTTCTACAGTAAACCTCTTGTAAAACCACGGAAT  500

seq1  AGTTTCCATTAGCTCTATATGACACAAAGAAAAAGAAAAAGATCTTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATTAGCTCTATATGACACAAAGAAAAAGAAAAAGATCTTGAAT  550

seq1  CATAAATATTCAATGTTTTTCTTATAATGTATATATAGTTTGGGCACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATATTCAATGTTTTTCTTATAATGTATATATAGTTTGGGCACACT  600

seq1  TTTATGTAAGGCCCTGTTTCTTCCTGAAGGACTCTCCTACAATAAAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAAGGCCCTGTTTCTTCCTGAAGGACTCTCCTACAATAAAACTC  650

seq1  CCGTGTCACAGTAGAAATCTGTCACAGTGAAGCCATACTGACATACTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCACAGTAGAAATCTGTCACAGTGAAGCCATACTGACATACTGTC  700

seq1  ATGTGAGGTTTTTGTGTTCGTATAAGATTCATTTAGAGTTATAGATTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGTTTTTGTGTTCGTATAAGATTCATTTAGAGTTATAGATTCAG  750

seq1  TGAGTTTCCGAAATGTATCACAAATTGTAGTTGTTTCATTGACCTGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCCGAAATGTATCACAAATTGTAGTTGTTTCATTGACCTGAAAC  800

seq1  TCCATCATCTTCAGCTTGCTCATCTTCTAACCAACTTCCAAGCATTGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATCTTCAGCTTGCTCATCTTCTAACCAACTTCCAAGCATTGATT  850

seq1  GCTTTACTCTCCCAGAAGTTTTGTCTTTTCCAAAATGTGAAATGACTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTCTCCCAGAAGTTTTGTCTTTTCCAAAATGTGAAATGACTTGG  900

seq1  ATCATACAGTATGTAG-CCTTTTCATGTTGACTTCACTTAAATAT-GGTT  948
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  ATCATACAGTATGTAGCCCTTTTCATGTTGACTTCACTTAAATATGGGTT  950

seq1  TTAATATTCTGTCATGATAAATGCCCAGTTTTAATAGAATCACTAGGCAT  998
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAATATTCTGTCATGATAAATGCCCAGTTTTAATAG-ATCACTAGGCAT  999

seq1  CTTAACAG-AAAACATA-TGATGGATGCTTCTGTTTAGAAAGAAGTGCAT  1046
      |||||||| |||||||| |||| ||||| ||||||||| ||| |||||||
seq2  CTTAACAGAAAAACATATTGAT-GATGC-TCTGTTTAGGAAG-AGTGCAT  1046

seq1  TATAATCTGCCAACTAAAATTAAGCAAA-TTATATACATTACATA-TATG  1094
       |||||||||  ||||||||  |||||| ||||||||| |||||| ||||
seq2  AATAATCTGC--ACTAAAAT--AGCAAATTTATATACA-TACATATTATG  1091

seq1  -ATATATATG  1103
       |||||||||
seq2  AATATATATG  1101


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