BAC Information

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BAC

Clone NameB6Ng01-289A05
Chromosome3 (Build37)
Map Location 139,504,965 - 139,645,314
singlet/doubletdoublet
Overlap genenone
Upstream geneTspan5, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
Downstream geneLOC229883, LOC621343, 4930590L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289A05.bB6Ng01-289A05.g
ACCGA086526GA086527
length6351,196
definitionB6Ng01-289A05.b B6Ng01-289A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,504,965 - 139,505,599)(139,644,115 - 139,645,314)
sequence
gaattccatgatattttaatagtcaatacactgaagtggccaagaacacc
cagaatgttgcaatcacattccggatttaagtcttatcacactacaatct
ctgctatattaattacatgaactaatatcttacacaatagattttgacca
cagtttctaactgcccacttcttcatgctctccgctccacataaccccca
cctctcctctcccccagattcacttttactttctgcacactgtctgactg
tgagtctctgtatctgctcccatctgctgtgggaggaagcttctctgatg
actgtaccaggcatagacctatgagcagaatatcatcagggacgcttgct
tgccttccttccttccttccttccttccttccatacttccttacttcctt
ccttccttcctccctccctccctcccttcttcccttcattccccccctct
ctttcctttttctttgtttttacttcctttcttcctttcatatatagcca
gtcatgtttgattctaccatatgtctttaagctatgcagtctcctgttca
tggccatctaggcagtgtacagaatgggctccctctcaaaccttgggcat
caagtcaaaccaggcattagttgaccactcccaca
gaattcttctccttatttcagcgtcacagctgctaattcatgaaaaactc
tacaaaacaaattaaagactcatgtgcacaaacactgcgtctttggttta
aaccaagattaactgaaatttgaaaaagaagacatgaaatcagttcagtt
ggacttgagcaaagctttttttttttttctttactttacccaaggccaac
taaacattggtattaagactggaaacaaaaactgtgtttttgttccccaa
attccactcacttctttactatttaatttcaacttttaaaaatcatattc
taaaatgtgattcagatttatattttccttctgtatatttaatcatatga
ctccttaggataaaattttctgaaaaagtttatattgtgctttatattta
aggtataatttgcaaagtaatttatacctgtttatcctggctttctcgcc
gtacctgtctgcttcttatcacaatgactatggacgaatcctctgaaatg
gcaagcaaacatttgattacatggtgttctttgatgagatttgccttcat
tatggtatctcttcactgtaagacaagagtaactaggacagtcttgtcct
gtccctctcacccctcctcctcttctccctcttcctccatcactattatc
tcccctttctctttcatttttgctcagtaaatcaaaaactggtaaattcc
ccatcttcctaattttcctgaaatacaatgaaatattgttgaaatcttat
agaatttaactgccatgtttcttctaacacacacacacacacacacacac
acacacacacgcgcgcgcgcgcgcctaataaaaccagcatttctctaagg
ttctaaacaggcttgaaaacttctttcacatagcttagaatctaacacac
aattaatgaggaataatgaacactatatttgatacactcttcagagtggt
tttaagctaggtgctatttaaaaccattttttctaaattctataactaag
tataatttgtaactttattctaatacatactcttatacctacagctggtg
aggatctacctttatcaaagatgcttctttggtgtagcagatggactata
cgatttcacactcaattcaaacacaggagaacaatggccttggggtttat
agccatttgagatgtctaacctaacctatatatcctaagggaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_139504965_139505599
seq2: B6Ng01-289A05.b_44_678

seq1  GAATTCCATGATATTTTAATAGTCAATACACTGAAGTGGCCAAGAACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATATTTTAATAGTCAATACACTGAAGTGGCCAAGAACACC  50

seq1  CAGAATGTTGCAATCACATTCCGGATTTAAGTCTTATCACACTACAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTTGCAATCACATTCCGGATTTAAGTCTTATCACACTACAATCT  100

seq1  CTGCTATATTAATTACATGAACTAATATCTTACACAATAGATTTTGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATATTAATTACATGAACTAATATCTTACACAATAGATTTTGACCA  150

seq1  CAGTTTCTAACTGCCCACTTCTTCATGCTCTCCGCTCCACATAACCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTAACTGCCCACTTCTTCATGCTCTCCGCTCCACATAACCCCCA  200

seq1  CCTCTCCTCTCCCCCAGATTCACTTTTACTTTCTGCACACTGTCTGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTCTCCCCCAGATTCACTTTTACTTTCTGCACACTGTCTGACTG  250

seq1  TGAGTCTCTGTATCTGCTCCCATCTGCTGTGGGAGGAAGCTTCTCTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTCTGTATCTGCTCCCATCTGCTGTGGGAGGAAGCTTCTCTGATG  300

seq1  ACTGTACCAGGCATAGACCTATGAGCAGAATATCATCAGGGACGCTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACCAGGCATAGACCTATGAGCAGAATATCATCAGGGACGCTTGCT  350

seq1  TGCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  400
      |||||||||||||||||||||||||||||||| | ||||||| |||||||
seq2  TGCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCATACTTCCTTACTTCCTT  400

seq1  CCTTCCTTCCTCCCTCCCTCCCTCCCTTCTTCCCTTCATTCCCCCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTCCCTCCCTCCCTCCCTTCTTCCCTTCATTCCCCCCCTCT  450

seq1  CTTTCCTTTTTCTTTGTTTTTACTTCCTTTCTTCCTTTCATATATAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTTTCTTTGTTTTTACTTCCTTTCTTCCTTTCATATATAGCCA  500

seq1  GTCATGTTTGATTCTACCATATGTCTTTAAGCTATGCAGTCTCCTGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTTTGATTCTACCATATGTCTTTAAGCTATGCAGTCTCCTGTTCA  550

seq1  TGGCCATCTAGGCAGTGTACAGAATGGGCTCCCTCTCAAACCATGGGCAT  600
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGCCATCTAGGCAGTGTACAGAATGGGCTCCCTCTCAAACCTTGGGCAT  600

seq1  CAAGTCAAACCAGGCATTAGTTGACCACTCCCACA  635
      |||||||||||||||||||||||||||||||||||
seq2  CAAGTCAAACCAGGCATTAGTTGACCACTCCCACA  635

seq1: chr3_139644115_139645314
seq2: B6Ng01-289A05.g_72_1267 (reverse)

seq1  ATATTCCCTAAGTAT---TATGTTATGTTATGACATCTCAAAT-GCTATA  46
      ||||||||| || ||   || |||| |||| |||||||||||| ||||||
seq2  ATATTCCCTTAGGATATATAGGTTAGGTTA-GACATCTCAAATGGCTATA  49

seq1  AACACCCCAGAGCCATTTGTTCT-CTGTGTTTGGA-TGAGTTGTGAAAAT  94
      |  ||||||  |||| ||||||| ||||||||| | |||| |||| ||||
seq2  A--ACCCCAAGGCCA-TTGTTCTCCTGTGTTTGAATTGAG-TGTG-AAAT  94

seq1  CTGTAATAGTCCTATCTGCTACA-CAAAGAAGCATCTTTGATAAAGGGTA  143
      | || ||||||| |||||||||| |||||||||||||||||||||||   
seq2  C-GT-ATAGTCC-ATCTGCTACACCAAAGAAGCATCTTTGATAAAGG--T  139

seq1  AGATCTTCACCAAGCTGTAGGTATAAGAGTATGTATTTAGAATAAAGTTA  193
      ||||| ||||| ||||||||||||||||||||||| ||||||||||||||
seq2  AGATCCTCACC-AGCTGTAGGTATAAGAGTATGTA-TTAGAATAAAGTTA  187

seq1  CAAATTATACTTAGTTATAGAATTTAG-AAAAATGGTTTTAAATAGCACC  242
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAATTATACTTAGTTATAGAATTTAGAAAAAATGGTTTTAAATAGCACC  237

seq1  TAGCTTAAAACCACTCTGAAGAGTGTATCAAATATAGTGTTCATTATTCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAAAACCACTCTGAAGAGTGTATCAAATATAGTGTTCATTATTCC  287

seq1  TCATTAATTGTGTGTTAGATTCTAAGCTATGTG-AAGAAGTTTTCAAGCC  341
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCATTAATTGTGTGTTAGATTCTAAGCTATGTGAAAGAAGTTTTCAAGCC  337

seq1  TGTTTAGAACCTTAGAGAAATGCTGGTTTTATTAGGCGCGCGCGCGCGCG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAACCTTAGAGAAATGCTGGTTTTATTAGGCGCGCGCGCGCGCG  387

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGAAGAAACATGGCAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGAAGAAACATGGCAG  437

seq1  TTAAATTCTATAAGATTTCAACAATATTTCATTGTATTTCAGGAAAATTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCTATAAGATTTCAACAATATTTCATTGTATTTCAGGAAAATTA  487

seq1  GGAAGATGGGGAATTTACCAGTTTTTGATTTACTGAGCAAAAATGAAAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGGGGAATTTACCAGTTTTTGATTTACTGAGCAAAAATGAAAGA  537

seq1  GAAAGGGGAGATAATAGTGATGGAGGAAGAGGGAGAAGAGGAGGAGGGGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGAGATAATAGTGATGGAGGAAGAGGGAGAAGAGGAGGAGGGGT  587

seq1  GAGAGGGACAGGACAAGACTGTCCTAGTTACTCTTGTCTTACAGTGAAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGACAGGACAAGACTGTCCTAGTTACTCTTGTCTTACAGTGAAGA  637

seq1  GATACCATAATGAAGGCAAATCTCATCAAAGAACACCATGTAATCAAATG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCATAATGAAGGCAAATCTCATCAAAGAACACCATGTAATCAAATG  687

seq1  TTTGCTTGCCATTTCAGAGGATTCGTCCATAGTCATTGTGATAAGAAGCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGCCATTTCAGAGGATTCGTCCATAGTCATTGTGATAAGAAGCA  737

seq1  GACAGGTACGGCGAGAAAGCCAGGATAAACAGGTATAAATTACTTTGCAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTACGGCGAGAAAGCCAGGATAAACAGGTATAAATTACTTTGCAA  787

seq1  ATTATACCTTAAATATAAAGCACAATATAAACTTTTTCAGAAAATTTTAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACCTTAAATATAAAGCACAATATAAACTTTTTCAGAAAATTTTAT  837

seq1  CCTAAGGAGTCATATGATTAAATATACAGAAGGAAAATATAAATCTGAAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGAGTCATATGATTAAATATACAGAAGGAAAATATAAATCTGAAT  887

seq1  CACATTTTAGAATATGATTTTTAAAAGTTGAAATTAAATAGTAAAGAAGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTAGAATATGATTTTTAAAAGTTGAAATTAAATAGTAAAGAAGT  937

seq1  GAGTGGAATTTGGGGAACAAAAACACAGTTTTTGTTTCCAGTCTTAATAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAATTTGGGGAACAAAAACACAGTTTTTGTTTCCAGTCTTAATAC  987

seq1  CAATGTTTAGTTGGCCTTGGGTAAAGTAAAGAAAAAAAAAAAAAGCTTTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTAGTTGGCCTTGGGTAAAGTAAAGAAAAAAAAAAAAAGCTTTG  1037

seq1  CTCAAGTCCAACTGAACTGATTTCATGTCTTCTTTTTCAAATTTCAGTTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCCAACTGAACTGATTTCATGTCTTCTTTTTCAAATTTCAGTTA  1087

seq1  ATCTTGGTTTAAACCAAAGACGCAGTGTTTGTGCACATGAGTCTTTAATT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTTTAAACCAAAGACGCAGTGTTTGTGCACATGAGTCTTTAATT  1137

seq1  TGTTTTGTAGAGTTTTTCATGAATTAGCAGCTGTGACGCTGAAATAAGGA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTAGAGTTTTTCATGAATTAGCAGCTGTGACGCTGAAATAAGGA  1187

seq1  GAAGAATTC  1200
      |||||||||
seq2  GAAGAATTC  1196