BAC Information

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BAC

Clone NameB6Ng01-289C14
Chromosome3 (Build37)
Map Location 91,503,158 - 91,504,348
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289C14.bB6Ng01-289C14.g
ACCGA086636GA086637
length1,1971,086
definitionB6Ng01-289C14.b B6Ng01-289C14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttattgctgtatcaagacagacagaggatgtctacaggaatttt
ctgtgcagaggtgttcttgcttaacccctccatgaattctactccttaaa
ctgacacaggaattgttaacaaatcatgtgtcaggtacaaagtgtattag
gcaaggtgtcccagcataagaatgtaagatctgcagctggtggtgctctc
actctcactaagatcaatcaccagtacacttaagtcccatcacatctatt
accaaatgtttattacctagaaagttccaccaatttaggagtttatactg
gcattttcttctcaggatttcccagtcagtagcttcagtgggattcactc
attagttctctccaggggaagtaatgtggagaaattaaattagaatactg
gagggaacattcaattctctgcctgagacttgtgtttaaatctcttctag
ttcctgtgtttgcagcctctgcaacagtaaaagccattaaccttttgcca
ggccagttttcaaggaagatgccttttattcaggctaatttttatagaca
aatgttggatacttctagacaaactaactgtcttatttttctgcaaaaca
gaatcctagctctgaatttgaaaggctggcagaaccaaattgcaaagtat
taacctctatttagtatgtttctttatgagcacaaacctcttcactttta
tactcaaatgggaatcctgggccagttttactatgcatttgcattctgct
gactcagtgtgcaccctaatcctttcctgggacactatcaatgctaacag
tcatctttcttccaggaagtacaggaaagtccttttaagtagactataga
atgaaccaaagggatcacagtgttgaagaggcttttgacatgataagaag
aatgggaatgctgtaatatagggaagatgaacaacaatgctttttgaaca
ttagcatcatcacattgatgtgtctggccattgaagagggtgaacataga
tatgaccagcattcctaagcagagttctggaacactttcttaatatccca
cccagtgttctgatttttagacagacactgaattatgtttggggtctagg
gtaatgcaaaaaagtctttctccacaccagtgtttctcaatgttttctga
agtcttatcttaggatttgtgatcccaaaaacaaatgtggatataca
gaattcagtaatgagtttgattattttctgccttttactactccttgttg
tgcttgcttcttctagttctagaactttacttttaaactgctgatgtaga
aactttgaaattactttgtgaaggcatttattcctatgaatgttgctctt
ggcactgcttcccttgtggcccctatatttgggtatgatgttccttaatt
ttcagtgaatactagcaacctttcatttgttgctttatttcttccctgac
cacaagatcactgagtagagctttgttctgtttctattagtgtgtagtct
gtgtgtagtctttcagtttttcctttgttgttgaagtacagatgagtcca
tgttgggctgaaagaacatcctttgtcatttcaaatctcttgtatcactt
caggcttgattgtgacccatatgaggtcaattttttttgagaaggatcct
tgaggggatgagaagaagatatattcttttgggtttaggtgaaatataga
ttctatagatgtctattaggtccatttgattcaccatgccaattagtttc
attatttctcagtatagatttttttctggatgtcctgtcaattagtgaga
ctggagtgtttaagtttgccagtattagtgagtgagtattgatgtgtgat
ttaagctttaggaatcttccttttgcaaatacaggtgcccttgtgtatgg
gcataggtgttcagatttgaaatatcatactggtagatttttctattgat
gaccatgacatataattccctgacaccgttcatgaaatttgttgaaaggc
ttctgtcaggatttttttcttttgttttttagatttaaattgttcttgac
tgacattatcaatttcttacagatcatcttcggcccctgaaattgtctct
ttcatttcccggtattatgatggtgatctatttttcctgttctctttccc
taggtttccatttcctggactccttcaggcttgttttgttggtttgtttg
tttgctggtaggtttctgatcaacttcatgtcagagtgcacagtttaatt
ccatttccatcactaatttaaactacattggctcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91503158_91504348
seq2: B6Ng01-289C14.b_43_1239 (reverse)

seq1  TGTAT---CACATTTG-TCTGGGAAGCACAAATCCTAAGAT-AGACTTCA  45
      |||||   |||||||| | | || | ||||||||||||||| ||||||||
seq2  TGTATATCCACATTTGTTTTTGGGATCACAAATCCTAAGATAAGACTTCA  50

seq1  G-AAACATTGAG-AACACTGGTGTGGAGAAAGACTTTTTTCCATTACCCT  93
      | |||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  GAAAACATTGAGAAACACTGGTGTGGAGAAAGACTTTTTTGCATTACCCT  100

seq1  AGACCCCCAAACATAATTTCAGTGTCTGTTTCTATATATTTCAGAAACAC  143
      ||| |||||||||||| |||||||||||  |||| | |  |||| |||||
seq2  AGA-CCCCAAACATAA-TTCAGTGTCTG--TCTAAAAA--TCAG-AACAC  143

seq1  T-GGTGGGATA-TAAGAAAGGTGTCCAGAACTCTTGCTTAGGAATGCTGG  191
      | ||||||||| ||||||||   |||||||||| ||||||||||||||||
seq2  TGGGTGGGATATTAAGAAAGTGTTCCAGAACTC-TGCTTAGGAATGCTGG  192

seq1  TCATATCTATGTTCACCCTCTTC-ATGGCCAGACACATCAATGTGATGAT  240
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCATATCTATGTTCACCCTCTTCAATGGCCAGACACATCAATGTGATGAT  242

seq1  GCTAATGTTC-AAAAGCATTGTTGTTCATCTT-CCTATATTACAGCATTC  288
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  GCTAATGTTCAAAAAGCATTGTTGTTCATCTTCCCTATATTACAGCATTC  292

seq1  CCATTCTTCTTATCATGTCAAAAGCCTCTTCAACACTGTGAT-CCTTTGG  337
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCATTCTTCTTATCATGTCAAAAGCCTCTTCAACACTGTGATCCCTTTGG  342

seq1  TTCATTCTATAGTCTACTT-AAAGGACTTTCCTGTACTTCCTGGAAGAAA  386
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCATTCTATAGTCTACTTAAAAGGACTTTCCTGTACTTCCTGGAAGAAA  392

seq1  GATGACTGTTAGCATTGATAGTGTCCCAGGAAAGGATTAGGGTGCACACT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTGTTAGCATTGATAGTGTCCCAGGAAAGGATTAGGGTGCACACT  442

seq1  GAGTCAGCAGAATGCAAATGCATAGTAAAACTGGCCCAGGATTCCCATTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGCAGAATGCAAATGCATAGTAAAACTGGCCCAGGATTCCCATTT  492

seq1  GAGTATAAAAGTGAAGAGGTTTGTGCTCATAAAGAAACATACTAAATAGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAAAAGTGAAGAGGTTTGTGCTCATAAAGAAACATACTAAATAGA  542

seq1  GGTTAATACTTTGCAATTTGGTTCTGCCAGCCTTTCAAATTCAGAGCTAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATACTTTGCAATTTGGTTCTGCCAGCCTTTCAAATTCAGAGCTAG  592

seq1  GATTCTGTTTTGCAGAAAAATAAGACAGTTAGTTTGTCTAGAAGTATCCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTTTTGCAGAAAAATAAGACAGTTAGTTTGTCTAGAAGTATCCA  642

seq1  ACATTTGTCTATAAAAATTAGCCTGAATAAAAGGCATCTTCCTTGAAAAC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTCTATAAAAATTAGCCTGAATAAAAGGCATCTTCCTTGAAAAC  692

seq1  TGGCCTGGCAAAAGGTTAATGGCTTTTACTGTTGCAGAGGCTGCAAACAC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGCAAAAGGTTAATGGCTTTTACTGTTGCAGAGGCTGCAAACAC  742

seq1  AGGAACTAGAAGAGATTTAAACACAAGTCTCAGGCAGAGAATTGAATGTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTAGAAGAGATTTAAACACAAGTCTCAGGCAGAGAATTGAATGTT  792

seq1  CCCTCCAGTATTCTAATTTAATTTCTCCACATTACTTCCCCTGGAGAGAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGTATTCTAATTTAATTTCTCCACATTACTTCCCCTGGAGAGAA  842

seq1  CTAATGAGTGAATCCCACTGAAGCTACTGACTGGGAAATCCTGAGAAGAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGTGAATCCCACTGAAGCTACTGACTGGGAAATCCTGAGAAGAA  892

seq1  AATGCCAGTATAAACTCCTAAATTGGTGGAACTTTCTAGGTAATAAACAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGTATAAACTCCTAAATTGGTGGAACTTTCTAGGTAATAAACAT  942

seq1  TTGGTAATAGATGTGATGGGACTTAAGTGTACTGGTGATTGATCTTAGTG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATAGATGTGATGGGACTTAAGTGTACTGGTGATTGATCTTAGTG  992

seq1  AGAGTGAGAGCACCACCAGCTGCAGATCTTACATTCTTATGCTGGGACAC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGAGCACCACCAGCTGCAGATCTTACATTCTTATGCTGGGACAC  1042

seq1  CTTGCCTAATACACTTTGTACCTGACACATGATTTGTTAACAATTCCTGT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTAATACACTTTGTACCTGACACATGATTTGTTAACAATTCCTGT  1092

seq1  GTCAGTTTAAGGAGTAGAATTCATGGAGGGGTTAAGCAAGAACACCTCTG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTAAGGAGTAGAATTCATGGAGGGGTTAAGCAAGAACACCTCTG  1142

seq1  CACAGAAAATTCCTGTAGACATCCTCTGTCTGTCTTGATACAGCAATAAG  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAATTCCTGTAGACATCCTCTGTCTGTCTTGATACAGCAATAAG  1192

seq1  AATTC  1191
      |||||
seq2  AATTC  1197