BAC Information

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BAC

Clone NameB6Ng01-289D05
Chromosome3 (Build37)
Map Location 29,346,383 - 29,446,850
singlet/doubletdoublet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1, LOC100040727
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289D05.bB6Ng01-289D05.g
ACCGA086666GA086667
length1,0411,047
definitionB6Ng01-289D05.b B6Ng01-289D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,445,806 - 29,446,850)(29,346,383 - 29,347,428)
sequence
gaattctgtccctctgtttctgtctctctgcctccatgtccaccacgctt
cctgttttggttttcaaactctctggaaacacatctatttcataggcgct
cgataagaactgagccatcctcaattttcttgtctctttcttcaagatat
ccttagaaggaatcatctccattattattttcagaactaaaataaaataa
agcacacaagccaggtctcatttcaccatctcatgggcctgaagttagcc
caggcatcactagacactcaaattcccctagtccatttcaatcctgtttg
acctatattacacgtgctatatttcatattaattacacagttgataccac
actatgcaatatgtattctgatatttccgaattgtttatcataaacattt
ttatcattttataaatatatcttcaaaagtactaattaatatttgactga
ttttgtgcttacagtgaagctccttgccttaaactcctcaaatacatatg
aggagtagaggatcaatactctagtataagtctgctcaactgtaccacaa
agaaataacattaaggaagaggataaaaatattatacacagcaaacagta
ttctaaatagcagtgtcatgcttcattagtctataaaagtaacacatgca
agtgatgttcttagctagttaaatttattttgcttaaagggccaagagaa
gtgtttgtgtttatgttatacagacttggtatttcacatcacagggggaa
taaatgtcaaatttaataagacatgactagatggcgggattttgttttat
ttaagtgaaatgtaatctgttctgatttccatttaagaagaagttttatc
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacaatgaatgag
tagagactaaccctcagatgccatttcatttcaccttgttttttgggaac
aagatcagccatgaccagtattatcgagtacctactgctctgcttcctag
catggcctggtcacgtgtgtcactgtgaccatactgctagg

gaattcatgatcctgtgtaaagcaggagataagattttagtacctgaagg
cagagtgagctttatgtgaggcaactgtaagatgatctgggagcagatag
tgcaggcaagcaagtagtctatctctaggttgcaaggttttggggaacta
cagggacagcacagagtttcaggttaaacactagcccaggtatagtcttt
actgacaaggaaactgttccctactcttagagaacactctcttcttctct
tccatgcctgtactcaaacacaactaccttttggggggatataatatata
tgtagttttgagaaacttcactgaatttgaaattgtgtgtgtgtgtgtgt
gtgtatgtatatataaaacctcccactgtgcaactgtgttcttgtgtata
cttgaccaaaggttcctgattattatgctaccattccagtatgtaaaaaa
aaaaattcagtactattatgattttgtttcttgatatagtctatagtcat
caaatcataccgaagaaaaagagaaagaaaaggagagaaaggaaagggaa
agaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaac
caaacaacattcagtttgttgacatgacacatccataaatttcctatgtt
atctatgaaatgtcataatcctgtttgtcctaagaaaactcttttcattc
tgtcttaattaaatctttcatacaagcagtttcctgccagctataatcca
ttcattcaagtgtgaaagactggaaactatttacatattcacaaccctga
tagctatgtctgggataaaataaatttatttctcagttgtctgggctctc
cagatattacagttgctgttgcgtagtcaagctttctcctgcaagactca
tttagagcacttctgaaacatgccagaaattatatgacatagaatatgag
ctcttggggtaaaggctgcgttttgaatttgggttctgttattgctctga
aagtgctgcatgtgcctaaagcttcttttataattggtaaattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_29445806_29446850
seq2: B6Ng01-289D05.b_43_1083 (reverse)

seq1  CCTAGCAGTTATGTCACAGTGACACACGTTGACAAGGCCAATGCTAGGGA  50
      |||||||||   |||||||||||||||| |||| ||||| |||||| |||
seq2  CCTAGCAGTATGGTCACAGTGACACACG-TGACCAGGCC-ATGCTA-GGA  47

seq1  GGCAGAGCAGTAGGGTACTCGATAATAACTGGTCAATGGCTGATCTTGTT  100
       ||||||||||| ||||||||||||| ||||||| |||||||||||||||
seq2  AGCAGAGCAGTA-GGTACTCGATAAT-ACTGGTC-ATGGCTGATCTTGTT  94

seq1  -CCAAAAAACAAGGTGAAATG-AATAGCATCTGAGGGTTAGTCTCTAC-C  147
       |||||||||||||||||||| ||| |||||||||||||||||||||| |
seq2  CCCAAAAAACAAGGTGAAATGAAATGGCATCTGAGGGTTAGTCTCTACTC  144

seq1  ATTCATAGAAACACACACACACACACACACACACACACACACACACACGA  197
      |||||| |  ||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTG-TACACACACACACACACACACACACACACACACACACACGA  193

seq1  TAAAACTTCTTCTTAAATGGAAATCAGAACAGATTACATTTCACTTAAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTCTTCTTAAATGGAAATCAGAACAGATTACATTTCACTTAAAT  243

seq1  AAAACAAAATCCCGCCATCTAGTCATGTCTTATTAAATTTGACATTTATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATCCCGCCATCTAGTCATGTCTTATTAAATTTGACATTTATT  293

seq1  CCCCCTGTGATGTGAAATACCAAGTCTGTATAACATAAACACAAACACTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGTGATGTGAAATACCAAGTCTGTATAACATAAACACAAACACTT  343

seq1  CTCTTGGCCCTTTAAGCAAAATAAATTTAACTAGCTAAGAACATCACTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCCCTTTAAGCAAAATAAATTTAACTAGCTAAGAACATCACTTG  393

seq1  CATGTGTTACTTTTATAGACTAATGAAGCATGACACTGCTATTTAGAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTACTTTTATAGACTAATGAAGCATGACACTGCTATTTAGAATA  443

seq1  CTGTTTGCTGTGTATAATATTTTTATCCTCTTCCTTAATGTTATTTCTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCTGTGTATAATATTTTTATCCTCTTCCTTAATGTTATTTCTTT  493

seq1  GTGGTACAGTTGAGCAGACTTATACTAGAGTATTGATCCTCTACTCCTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACAGTTGAGCAGACTTATACTAGAGTATTGATCCTCTACTCCTCA  543

seq1  TATGTATTTGAGGAGTTTAAGGCAAGGAGCTTCACTGTAAGCACAAAATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTTGAGGAGTTTAAGGCAAGGAGCTTCACTGTAAGCACAAAATC  593

seq1  AGTCAAATATTAATTAGTACTTTTGAAGATATATTTATAAAATGATAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATATTAATTAGTACTTTTGAAGATATATTTATAAAATGATAAAA  643

seq1  ATGTTTATGATAAACAATTCGGAAATATCAGAATACATATTGCATAGTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATGATAAACAATTCGGAAATATCAGAATACATATTGCATAGTGT  693

seq1  GGTATCAACTGTGTAATTAATATGAAATATAGCACGTGTAATATAGGTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAACTGTGTAATTAATATGAAATATAGCACGTGTAATATAGGTCA  743

seq1  AACAGGATTGAAATGGACTAGGGGAATTTGAGTGTCTAGTGATGCCTGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGATTGAAATGGACTAGGGGAATTTGAGTGTCTAGTGATGCCTGGG  793

seq1  CTAACTTCAGGCCCATGAGATGGTGAAATGAGACCTGGCTTGTGTGCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTCAGGCCCATGAGATGGTGAAATGAGACCTGGCTTGTGTGCTTT  843

seq1  ATTTTATTTTAGTTCTGAAAATAATAATGGAGATGATTCCTTCTAAGGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTAGTTCTGAAAATAATAATGGAGATGATTCCTTCTAAGGAT  893

seq1  ATCTTGAAGAAAGAGACAAGAAAATTGAGGATGGCTCAGTTCTTATCGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAAGAAAGAGACAAGAAAATTGAGGATGGCTCAGTTCTTATCGAG  943

seq1  CGCCTATGAAATAGATGTGTTTCCAGAGAGTTTGAAAACCAAAACAGGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTATGAAATAGATGTGTTTCCAGAGAGTTTGAAAACCAAAACAGGAA  993

seq1  GCGTGGTGGACATGGAGGCAGAGAGACAGAAACAGAGGGACAGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTGGACATGGAGGCAGAGAGACAGAAACAGAGGGACAGAATTC  1041


seq1: chr3_29346383_29347428
seq2: B6Ng01-289D05.g_70_1116

seq1  GAATTCATGATCCTGTGTAAAGCAGGAGATAAGATTTTAGTACCTGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATCCTGTGTAAAGCAGGAGATAAGATTTTAGTACCTGAAGG  50

seq1  CAGAGTGAGCTTTATGTGAGGCAACTGTAAGATGATCTGGGAGCAGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGCTTTATGTGAGGCAACTGTAAGATGATCTGGGAGCAGATAG  100

seq1  TGCAGGCAAGCAAGTAGTCTATCTCTAGGTTGCAAGGTTTTGGGGAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAAGCAAGTAGTCTATCTCTAGGTTGCAAGGTTTTGGGGAACTA  150

seq1  CAGGGACAGCACAGAGTTTCAGGTTAAACACTAGCCCAGGTATAGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAGCACAGAGTTTCAGGTTAAACACTAGCCCAGGTATAGTCTTT  200

seq1  ACTGACAAGGAAACTGTTCCCTACTCTTAGAGAACACTCTCTTCTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAAGGAAACTGTTCCCTACTCTTAGAGAACACTCTCTTCTTCTCT  250

seq1  TCCATGCCTGTACTCAAACACAACTACCTTTTGGGGGGATATAATATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCTGTACTCAAACACAACTACCTTTTGGGGGGATATAATATATA  300

seq1  TGTAGTTTTGAGAAACTTCACTGAATTTGAAATTGTGTGTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTTGAGAAACTTCACTGAATTTGAAATTGTGTGTGTGTGTGTGT  350

seq1  GTGTATGTATATATAAAACCTCCCACTGTGCAACTGTGTTCTTGTGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTATATATAAAACCTCCCACTGTGCAACTGTGTTCTTGTGTATA  400

seq1  CTTGACCAAAGGTTCCTGATTATTATGCTACCATTCCAGTATGTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCAAAGGTTCCTGATTATTATGCTACCATTCCAGTATGTAAAAAA  450

seq1  AAAAATTCAGTACTATTATGATTTTGTTTCTTGATATAGTCTATAGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCAGTACTATTATGATTTTGTTTCTTGATATAGTCTATAGTCAT  500

seq1  CAAATCATACCGAAGAAAAAGAGAAAGAAAAGGAGAGAAAGGAAAGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATACCGAAGAAAAAGAGAAAGAAAAGGAGAGAAAGGAAAGGGAA  550

seq1  AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAC  600

seq1  CAAACAACATTCAGTTTGTTGACATGACACATCCATAAATTTCCTATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACATTCAGTTTGTTGACATGACACATCCATAAATTTCCTATGTT  650

seq1  ATCTATGAAATGTCATAATCCTGTTTGTCCTAAGAAAACTCTTTTCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGAAATGTCATAATCCTGTTTGTCCTAAGAAAACTCTTTTCATTC  700

seq1  TGTCTTAATTAAATCTTTCATACAAGCAGTTTCCTGCCAGCTATAATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAATTAAATCTTTCATACAAGCAGTTTCCTGCCAGCTATAATCCA  750

seq1  TTCATTCAGGTGTGAAAGACTGGAAACTATTTACATATTCACAACCCTGA  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCAAGTGTGAAAGACTGGAAACTATTTACATATTCACAACCCTGA  800

seq1  TAGCTATGTCTGGGATAAAATAAATTTATTTCTCAGTTGTCTGGGCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGTCTGGGATAAAATAAATTTATTTCTCAGTTGTCTGGGCTCTC  850

seq1  CAGATATTACAGTTGCTGTTGCGTAGTCAAGCTTTCTCCTGCAAGACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTACAGTTGCTGTTGCGTAGTCAAGCTTTCTCCTGCAAGACTCA  900

seq1  TTTAGAGCACTTCTGAAACATGCCAGAAA-TATATGACAATAGAATATGA  949
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  TTTAGAGCACTTCTGAAACATGCCAGAAATTATATGAC-ATAGAATATGA  949

seq1  GCTCTTGGGGTAAAGGCTGCGTTTTG-ATTTTGGTTCTGTTTATTGCTCT  998
      |||||||||||||||||||||||||| |||| ||||||| ||||||||||
seq2  GCTCTTGGGGTAAAGGCTGCGTTTTGAATTTGGGTTCTG-TTATTGCTCT  998

seq1  GAAAGTGCTGCATGTGCCTTAAGC-TCTTTATAAATATGTAAATAAAAA  1046
      ||||||||||||||||||| |||| |||||   |||  |||||| ||||
seq2  GAAAGTGCTGCATGTGCCTAAAGCTTCTTTTATAATTGGTAAATTAAAA  1047


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