BAC Information

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BAC

Clone NameB6Ng01-289O06
Chromosome3 (Build37)
Map Location 48,977,646 - 48,978,401
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
Downstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289O06.bB6Ng01-289O06.g
ACCGA087169GA087170
length1,2241,045
definitionB6Ng01-289O06.b B6Ng01-289O06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctggggtccaccttcttgagttctttatatatattggatattagtaccc
tatctgatttaggataggtaaagatcctttcccaaactgttggtggtctt
tttgtcttattgatggtgtcttttgccttgcagaagctttgcaactttat
gaggtcccatttatcgattcttgatcttacagcacaagccattgctattc
tattcaggaatttttcccctgtacccatatcttcgaggcttttccctact
ttatcctctataagtttcagtgtctctggttttatgtggagtttcttaat
caacttagatttgaccttagcataaggagatctatgcaaaaatcctcaat
aaagttcttgctaaccgaatccaagaacacatcaaaacaatcatccatcc
tgaccaagtaggtttcatcccagggatgcaaggatggttcaatatacgga
aatccatcaagatattccagtatataaacaaactcaaagacaaaaaccac
atgatcatctcgttagatgctgagaaagcatttgacaaaatccaacaccc
attcatgataaaagtcttggaaagatcatgaattcaaggcccacacctaa
ccatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaat
ggtgtgaagctggaagaaatcccactaaaatcagggactagacaaggctg
tccactctctccctacctattcaacattgtacttgaagtcctagccagag
caattagacaacaaaaggagatcaaggggatacaaattggaaagaagaag
tcaaaatatcactctttgcatatgatatgatagtatataagtgaccctaa
aaattccaccagagaactcctaagcctgataaacagcttcaatgaagata
ctggatataaatttaactcaagcaaggtcaatgggcctttctggtacaca
aggataaaacaagggctgagaaaggaaaataggggaaacaacacctttct
tcaataggtcacaaacatattaaaaatacctttggcatgaactctactaa
ggaaggtgaaaggaattcctgttatgaacaggaacttcaagtcttctgtg
agcaggactcaaggaagaatctctcagaagatgattggaggaatcctccc
atatacctcatcaatgggtgagta

gaattcaagaaatttatctgaaaccagttaaatagtgaaattaccattgg
agtacagcaaatactttgaaaaaaaattactgtcaagttgagaagtgtat
tttggaactcttaagtttatgtatgtattcacaggtacataggtatacat
aagtgtataaacacatacaggcacatacaaagagaaagagagagacaggt
agataaaattaactgcacttaacaatgcctgtccttaatcctagttttaa
atctgtactaaaataatagaattttaatatttatttttaacattcctttt
atttttgagatcataatataataaaatgatttcttccttttcctccttcc
caactcctcctttctctctttcaatttgatgaccttattttaattcttgt
tacatgtatgtatatatgtagatatacatatgtatatattcctaaatata
gcctttcagtccagattatggtacttgtatgttttcaaaatcaaagatgt
aaacataaatacacatcacttgaaccattttatatttgtcaaaggtgcag
aaatataaggtagaaaaagggaaacaccttcaataaatggttcagaaaaa
tatatgtccaccatcagcagaatgaaattatacctgtatctgttaccttg
cacaaaaactaactctgaatagctcaaagacctaaatgtaaaataagaac
actaaaagtactagaagaaaacagaagaagaaactaggaacttccctgca
tgatataggtataggaaaggaattcctaaatagggacccatttgcccaag
aaagagggccaaggttgacaagtgggacttcaaaacagtcatcggctagg
aatgaacattttatgaatgacatatctgatgggtagttggtatccaaaat
atagtagaactggggaagtatataacaaacacaaaaacaacacaagaaga
aagttactaatttgaaaatgggccctagagccaaagagttcccaagaaat
aaatgctacataaaaaaaaagtttttattctcttgctgctatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48977646_48978401
seq2: B6Ng01-289O06.g_68_822 (reverse)

seq1  TATCATGCAGGGAAGTTCCTAGTTTCTTCTTCTGTTTTCTTCTAGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGCAGGGAAGTTCCTAGTTTCTTCTTCTGTTTTCTTCTAGTACTT  50

seq1  TTAGTGTTTCTTATTTTACATTTAGGTCTTTGAGCTATTCAGAGTTAGTT  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTG-TTCTTATTTTACATTTAGGTCTTTGAGCTATTCAGAGTTAGTT  99

seq1  TTTGTGCAAGGTAACAGATACAGGTATAATTTCATTCTGCTGATGGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCAAGGTAACAGATACAGGTATAATTTCATTCTGCTGATGGTGGA  149

seq1  CATATATTTTTCTGAACCATTTATTGAAGGTGTTTCCCTTTTTCTACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTTTTCTGAACCATTTATTGAAGGTGTTTCCCTTTTTCTACCTT  199

seq1  ATATTTCTGCACCTTTGACAAATATAAAATGGTTCAAGTGATGTGTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTGCACCTTTGACAAATATAAAATGGTTCAAGTGATGTGTATTT  249

seq1  ATGTTTACATCTTTGATTTTGAAAACATACAAGTACCATAATCTGGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACATCTTTGATTTTGAAAACATACAAGTACCATAATCTGGACTG  299

seq1  AAAGGCTATATTTAGGAATATATACATATGTATATCTACATATATACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTATATTTAGGAATATATACATATGTATATCTACATATATACATA  349

seq1  CATGTAACAAGAATTAAAATAAGGTCATCAAATTGAAAGAGAGAAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAACAAGAATTAAAATAAGGTCATCAAATTGAAAGAGAGAAAGGAG  399

seq1  GAGTTGGGAAGGAGGAAAAGGAAGAAATCATTTTATTATATTATGATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGGAAGGAGGAAAAGGAAGAAATCATTTTATTATATTATGATCTC  449

seq1  AAAAATAAAAGGAATGTTAAAAATAAATATTAAAATTCTATTATTTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAAGGAATGTTAAAAATAAATATTAAAATTCTATTATTTTAGT  499

seq1  ACAGATTTAAAACTAGGATTAAGGACAGGCATTGTTAAGTGCAGTTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTAAAACTAGGATTAAGGACAGGCATTGTTAAGTGCAGTTAATT  549

seq1  TTATCTACCTGTCTCTCTCTTTCTCTTTGTATGTGCCTGTATGTGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTACCTGTCTCTCTCTTTCTCTTTGTATGTGCCTGTATGTGTTTAT  599

seq1  ACACTTATGTATACCTATGTACCTGTGAATACATACATAAACTTAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATGTATACCTATGTACCTGTGAATACATACATAAACTTAAGAGT  649

seq1  TCCAAAATACACTTCTCAACTTGACAGTAATTTTTTTTCAAAGTATTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATACACTTCTCAACTTGACAGTAATTTTTTTTCAAAGTATTTGC  699

seq1  TGTACTCCAATGGTAATTTCACTATTTAACTGGTTTCAGATAAATTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCAATGGTAATTTCACTATTTAACTGGTTTCAGATAAATTTCTT  749

seq1  GAATTC  756
      ||||||
seq2  GAATTC  755


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