BAC Information

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BAC

Clone NameB6Ng01-290J03
Chromosome3 (Build37)
Map Location 89,606,244 - 89,773,478
singlet/doubletdoublet
Overlap geneLOC668087, She, Il6ra, Atp8b2, LOC668102
Upstream gene5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1
Downstream geneHax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290J03.bB6Ng01-290J03.g
ACCGA087682GA087683
length647144
definitionB6Ng01-290J03.b B6Ng01-290J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,772,832 - 89,773,478)(89,606,244 - 89,606,387)
sequence
gaattcactatctatatcaacctggccttgaactcaaagagccacctgcc
cctcccttcaaggtgctgggatgacaagtgtgtgtcaccatgcctgagta
gaggatattttagcattggtgtgggcttctctaatagagagtgacagaaa
ataagtcatgcttaatcatgggtgtgggttcctcaggggagagttatgat
caattgtcctagcagtagccatttattccttccctcaccctgctatggtg
ctcatgttagatcttaaaaggttgctatagaaacttttaaaaaagtagct
cttatctttctcttgatattgaggttagggctccagaggtgccttggatg
aaaccaggagccaccaggattgcactagagtctctggttagtgtcctaga
aactgtcaggttttcagctgggagcacagaagggtcttaagcagtggcta
gttgtgctgggttcttcttagttcttgaaaagctccaactaaaaccctgg
gtgaggggctgcttttccttgtcacacctttctagcttaccccagggttg
tctttaggaccaagagaactgatgtgtgaggcagggtccctcccatcagc
ctaggggaagccagctctgtgaggaatgggtgtgtgtgggggggtga
ttctcttacttattatgttgaaagcgggcttccatgagatgcccaaactg
gtcttgaactcattctgtaatccaggtattcttttaaagaaaaccttgtt
tgtttggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89772832_89773478
seq2: B6Ng01-290J03.b_43_689 (reverse)

seq1  TCACCCCCCCACACACACCCATTCCTCACAGAGCTGGCTTCCCCTAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCCCCACACACACCCATTCCTCACAGAGCTGGCTTCCCCTAGGCT  50

seq1  GATGGGAGGGACCCTGCCTCACACATCAGTTCTCTTGGTCCTAAAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAGGGACCCTGCCTCACACATCAGTTCTCTTGGTCCTAAAGACAA  100

seq1  CCCTGGGGTAAGCTAGAAAGGTGTGACAAGGAAAAGCAGCCCCTCACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGTAAGCTAGAAAGGTGTGACAAGGAAAAGCAGCCCCTCACCCA  150

seq1  GGGTTTTAGTTGGAGCTTTTCAAGAACTAAGAAGAACCCAGCACAACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTAGTTGGAGCTTTTCAAGAACTAAGAAGAACCCAGCACAACTAG  200

seq1  CCACTGCTTAAGACCCTTCTGTGCTCCCAGCTGAAAACCTGACAGTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTTAAGACCCTTCTGTGCTCCCAGCTGAAAACCTGACAGTTTCT  250

seq1  AGGACACTAACCAGAGACTCTAGTGCAATCCTGGTGGCTCCTGGTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTAACCAGAGACTCTAGTGCAATCCTGGTGGCTCCTGGTTTCAT  300

seq1  CCAAGGCACCTCTGGAGCCCTAACCTCAATATCAAGAGAAAGATAAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCACCTCTGGAGCCCTAACCTCAATATCAAGAGAAAGATAAGAGC  350

seq1  TACTTTTTTAAAAGTTTCTATAGCAACCTTTTAAGATCTAACATGAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTAAAAGTTTCTATAGCAACCTTTTAAGATCTAACATGAGCAC  400

seq1  CATAGCAGGGTGAGGGAAGGAATAAATGGCTACTGCTAGGACAATTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAGGGTGAGGGAAGGAATAAATGGCTACTGCTAGGACAATTGATC  450

seq1  ATAACTCTCCCCTGAGGAACCCACACCCATGATTAAGCATGACTTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCTCCCCTGAGGAACCCACACCCATGATTAAGCATGACTTATTTT  500

seq1  CTGTCACTCTCTATTAGAGAAGCCCACACCAATGCTAAAATATCCTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTCTCTATTAGAGAAGCCCACACCAATGCTAAAATATCCTCTAC  550

seq1  TCAGGCATGGTGACACACACTTGTCATCCCAGCACCTTGAAGGGAGGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCATGGTGACACACACTTGTCATCCCAGCACCTTGAAGGGAGGGGC  600

seq1  AGGTGGCTCTTTGAGTTCAAGGCCAGGTTGATATAGATAGTGAATTC  647
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTCTTTGAGTTCAAGGCCAGGTTGATATAGATAGTGAATTC  647

seq1: chr3_89606244_89606387
seq2: B6Ng01-290J03.g_70_213

seq1  TTCTCTTACTTATTATGTTGAAAGCGGGCTTCCATGAGATGCCCAAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTACTTATTATGTTGAAAGCGGGCTTCCATGAGATGCCCAAACTG  50

seq1  GTCTTGAACTCATTCTGTAATCCAGGTATTCTTTTAAAGAAAACCTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAACTCATTCTGTAATCCAGGTATTCTTTTAAAGAAAACCTTGTT  100

seq1  TGTTTGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  144