BAC Information

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BAC

Clone NameB6Ng01-290J08
Chromosome3 (Build37)
Map Location 30,179,040 - 30,249,407
singlet/doubletdoublet
Overlap geneMds1
Upstream gene6130401L20Rik, LOC100040676, Evi1
Downstream geneLOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290J08.bB6Ng01-290J08.g
ACCGA087690GA087691
length311127
definitionB6Ng01-290J08.b B6Ng01-290J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,249,097 - 30,249,407)(30,179,040 - 30,179,166)
sequence
aggagaagactaagtagattggcatacaatcttaagaagaaacagctgtc
cacctgccatgacttagaagagacagaagaagagaggcacactgtccagt
tagagatgccagcaaattaaggccacctaactccactgagcccaggaaac
cttgtctcaccaaatgtggtactgtctttccagaaagcatttctccaccc
ctgtaggatagctgctgtttgttaacttctgggtgagaaaaacagaaaac
atcttatagaatttagctttgatgcctaaacactgtgtgtgtgtgtgtgt
gtgtgtgtgtg
caaatgtttactcagatcataatgcataaacttttatgttttgtttagag
agatggtctccatgtgtagctcaggctgtcctggaactcactatgtagat
ggggaaggggagagggaagggaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_30249097_30249407
seq2: B6Ng01-290J08.b_52_362 (reverse)

seq1  CACACACACACACACACACACACACACAGTGTTTAGGCATCAAAGCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAGTGTTTAGGCATCAAAGCTAAA  50

seq1  TTCTATAAGATGTTTTCTGTTTTTCTCACCCAGAAGTTAACAAACAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAGATGTTTTCTGTTTTTCTCACCCAGAAGTTAACAAACAGCAG  100

seq1  CTATCCTACAGGGGTGGAGAAATGCTTTCTGGAAAGACAGTACCACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTACAGGGGTGGAGAAATGCTTTCTGGAAAGACAGTACCACATTT  150

seq1  GGTGAGACAAGGTTTCCTGGGCTCAGTGGAGTTAGGTGGCCTTAATTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGACAAGGTTTCCTGGGCTCAGTGGAGTTAGGTGGCCTTAATTTGC  200

seq1  TGGCATCTCTAACTGGACAGTGTGCCTCTCTTCTTCTGTCTCTTCTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTCTAACTGGACAGTGTGCCTCTCTTCTTCTGTCTCTTCTAAGT  250

seq1  CATGGCAGGTGGACAGCTGTTTCTTCTTAAGATTGTATGCCAATCTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGGTGGACAGCTGTTTCTTCTTAAGATTGTATGCCAATCTACTT  300

seq1  AGTCTTCTCCT  311
      |||||||||||
seq2  AGTCTTCTCCT  311

seq1: chr3_30179040_30179166
seq2: B6Ng01-290J08.g_68_194

seq1  CAAATGTTTACTCAGATCATAATGCATAAACTTTTATGTTTTGTTTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTTACTCAGATCATAATGCATAAACTTTTATGTTTTGTTTAGAG  50

seq1  AGATGGTCTCCATGTGTAGCTCAGGCTGTCCTGGAACTCACTATGTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTCTCCATGTGTAGCTCAGGCTGTCCTGGAACTCACTATGTAGAT  100

seq1  GGGGAAGGGGAGAGGGAAGGGAAGGGA  127
      |||||||||||||||||||||||||||
seq2  GGGGAAGGGGAGAGGGAAGGGAAGGGA  127